Rorug02G0464000

Belongs to the protein disulfide isomerase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
59492802 .. 59493419
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0464000.1

Sequence Viewer

Length: 270 bp
ATGCAAATTCGCTCAGCACGAATGGTTAAAGAGACGAGCCCATCACATGCAGTGGTAGTAGTAGTCATCGTAATCGACAGTGGTGGAGGAATCAGAGTCATCAGGATGCAGAGCAAGGTCCAGAGGCAAAAAGCGAGGCGACCCAATTCCAGGTTTATAGAGCTTTCAGGCTTAGATGGATGCTATTACGGGCGTCTCATGATCAGACAATCATGTATATGTAGTATAGATATGTTCATGATTTTCTTAAATTTGGGTTCAATCAAGTGA

Protein Analysis

89

Amino Acids

10.05

Weight (kDa)

10.57

Isoelectric Point (pI)

55.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014581)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04980 AT2G32920
fragaria_vesca FvH4_6g41940
malus_domestica MD09G1116100.v1.1 MD17G1107800.v1.1
prunus_persica Prupe.3G208600_v2.0.a1
pyrus_communis pycom09g04050
rosa_chinensis RchiOBHm_Chr2g0157821
rosa_laevigata RLG00000021023
rosa_multiflora Rmu_sc0002441.1_g000014
rosa_roxburghii Rroxscaffold_2G00091920
rosa_rugosa Rorug02G0464000
rosa_samantha Rh2AG529300 Rh2BG543400 Rh2CG513600 Rh2DG552200
rosa_wichuraiana Rw2G043760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 6, 250
AcyI GRCGYC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 1 cut(s) 261
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 2 cut(s) 26, 200
ApoI RAATTY 2 cut(s) 6, 250
AspS9I GGNCC 1 cut(s) 118
AvaII GGWCC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 41
BccI CCATC 2 cut(s) 49, 170
BciT130I CCWGG 1 cut(s) 151
BclI TGATCA 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 26, 200
BlpI GCTNAGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 2 cut(s) 96, 170
Bpu1102I GCTNAGC 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 151
BseGI GGATG 2 cut(s) 111, 185
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 2 cut(s) 26, 200
BsmBI CGTCTC 2 cut(s) 26, 200
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 201
Bsp1720I GCTNAGC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 26
BspHI TCATGA 2 cut(s) 198, 237
BssMI GATC 1 cut(s) 201
BssNI GRCGYC 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 193
BstDEI CTNAG 2 cut(s) 13, 172
BstF5I GGATG 2 cut(s) 111, 185
BstKTI GATC 1 cut(s) 204
BstMAI GTCTC 2 cut(s) 26, 200
BstMBI GATC 1 cut(s) 201
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 149
BtsCI GGATG 2 cut(s) 111, 185
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 57, 85
CciI TCATGA 2 cut(s) 198, 237
Cfr13I GGNCC 1 cut(s) 118
CseI GACGC 1 cut(s) 182
CviAII CATG 4 cut(s) 47, 199, 213, 238
CviJI RGCY 3 cut(s) 39, 163, 171
CviKI_1 RGCY 3 cut(s) 39, 163, 171
DdeI CTNAG 2 cut(s) 13, 172
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 149
EcoT38I GRGCYC 1 cut(s) 41
Esp3I CGTCTC 2 cut(s) 26, 200
FaeI CATG 4 cut(s) 50, 202, 216, 241
FaiI YATR 9 cut(s) 48, 158, 200, 214, 218, 220, 227, 233, 239
FatI CATG 4 cut(s) 46, 198, 212, 237
FbaI TGATCA 1 cut(s) 201
FokI GGATG 2 cut(s) 118, 192
FriOI GRGCYC 1 cut(s) 41
HgaI GACGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 193
Hin1II CATG 4 cut(s) 50, 202, 216, 241
HinfI GANTC 2 cut(s) 90, 96
Hpy188I TCNGA 2 cut(s) 95, 206
Hpy188III TCNNGA 4 cut(s) 103, 121, 199, 238
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 4, 50, 109
HpyF3I CTNAG 2 cut(s) 13, 172
Hsp92I GRCGYC 1 cut(s) 193
Hsp92II CATG 4 cut(s) 50, 202, 216, 241
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 1 cut(s) 201
LpnPI CCDG 5 cut(s) 88, 134, 136, 153, 163
LweI GCATC 2 cut(s) 96, 170
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 3 cut(s) 6, 145, 250
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 3 cut(s) 80, 117, 129
MseI TTAA 2 cut(s) 27, 248
MslI CAYNNNNRTG 2 cut(s) 104, 217
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
NdeII GATC 1 cut(s) 201
NlaIII CATG 4 cut(s) 50, 202, 216, 241
NspI RCATGY 1 cut(s) 50
PagI TCATGA 2 cut(s) 198, 237
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PfeI GAWTC 1 cut(s) 90
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspPI GGNCC 1 cut(s) 118
RseI CAYNNNNRTG 2 cut(s) 104, 217
SaqAI TTAA 2 cut(s) 27, 248
Sau3AI GATC 1 cut(s) 201
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 41
SetI ASST 3 cut(s) 120, 155, 165
SfaNI GCATC 2 cut(s) 96, 170
SinI GGWCC 1 cut(s) 118
SmiMI CAYNNNNRTG 2 cut(s) 104, 217
Sse9I AATT 3 cut(s) 6, 145, 250
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 75
TasI AATT 3 cut(s) 6, 145, 250
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 2 cut(s) 27, 248
Tru9I TTAA 2 cut(s) 27, 248
TscAI CASTG 2 cut(s) 57, 85
TspDTI ATGAA 1 cut(s) 226
TspRI CASTG 2 cut(s) 57, 85
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 2 cut(s) 6, 250
XceI RCATGY 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.