Rh2CG513600

Belongs to the protein disulfide isomerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014581
Physical Location & Seq
Reverse (-)
68754330 .. 68758477
4148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG513600.1

Sequence Viewer

Length: 1323 bp
ATGAGAATGAGAGAGAATCAATTTCGAGCTGTACCAATCTTCTTCTTCTTCTTCTTCTTGTTCTTCTTCGGCTTCAATGGCTGTGATGCGCTTTACGGACCATCATCACCAGTGCTTCAGCTGACTCCCACCAACTTCAAGTCCAAGGTTCTGGACTCGAACCGAGTTGTTCTGGTTGAATTCTTTGCGCCGTGGTGTGGACATTGTCAAGCTCTGACTCCTATATGGGAGAAAGCGGCTACTGTGTTGAAGGGTGTGGCCACCGTAGCTGCCCTTGATGCTGATGCGCACAAGTCCCTTGCTCAGGAATATGGGATTAGAGGATTCCCGACAATAAAGGTGTTCGTACCTGGACAGCCTCCAGTTGATTATCAAGGAGCGAGAGAAGTGAAACCCATTGCAGAATTTGCAGTCAAACAGATTAAGGCACTATTGAAGGACCGCTTAAGTGGAAAAGCAACTGGAGGATCAAGTGAAAAACCTGAACCTAATGCTTCAGTAGAACTAAATTCCCAGAATTTTGATGAATTAGTTGTTAAAAGCAAAGATCTCTGGGTTGTGGAGTTTTTTGCGCCTTGGTGTGGGCACTGTAAAAAATTGGCACCTGAGTGGAAGAAGGCTGCCAAAAACTTGAAGGGAAAGGTGAAGTTGGGACACGTTGACTGTGATGCAGAGAAGTCTCTTATGAGCAGGTTCAATGTTCAAGGATTCCCAACAATATTGGTATTTGGAGCTGACAAAGATAGCCCAGTACCTTATGAGGGTGCGAGGACTGCTTCAGCAATTGAATCATTTTCTCTCGAACAACTAGAAACAAATGTTGCACCTCCTGAAGTGACTGAGCTAACTGGCCCTGATGTATTGGAAGAGAAATGTGGTTCGGCCGCCATCTGTTTTGTGGCTTTTCTACCTGATATCTTGGATTCCAAGGCAGAAGGGAGGAACAAGTACCTTCAGCAGTTATTATCTGTTGCAGAGAAGTTCAAGAAGAGTCCGTATAGCTATGTCTGGGCAGCAGCTGGTAAGCAGCAAGACCTCGAGAATCGCGTAGGTGTTGGTGGTTATGGATATCCAGCATTGGTTGCCTTAAATGTGAAAAAAGGTGCTTATGCCCCACTTAAGAGTGCCTTCGAGCTTGATCAGATCATCGAATTTGTGAGAGAAGCTGGGCGTGGTGGAAAGGGAAACTTGCCTCTGAACGGCACCCCTAACATTGTGAAGAGCGAACCATGGGATGGTAAAGACGGAGAGATCATTGAAGAGGATGAGTTCTCCCTTGACGAACTGATGGGGGAAGATACTAAGAGCAAGGATGAATTGTGA

Protein Analysis

440

Amino Acids

48.38

Weight (kDa)

5.57

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 38 - 136 1.1e-29 Thioredoxin
Thioredoxin PF00085 167 - 265 1.2e-30 Thioredoxin
Thioredoxin_2 PF13098 183 - 256 2.7e-06 Thioredoxin-like domain
Thioredoxin_6 PF13848 200 - 387 2.6e-10 Thioredoxin-like domain
Thioredox_PDIA6_C PF24541 273 - 387 8.9e-09 PDIA6-like, C-terminal thioredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014581)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04980 AT2G32920
fragaria_vesca FvH4_6g41940
malus_domestica MD09G1116100.v1.1 MD17G1107800.v1.1
prunus_persica Prupe.3G208600_v2.0.a1
pyrus_communis pycom09g04050
rosa_chinensis RchiOBHm_Chr2g0157821
rosa_laevigata RLG00000021023
rosa_multiflora Rmu_sc0002441.1_g000014
rosa_roxburghii Rroxscaffold_2G00091920
rosa_rugosa Rorug02G0464000
rosa_samantha Rh2AG529300 Rh2BG543400 Rh2CG513600 Rh2DG552200
rosa_wichuraiana Rw2G043760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
Acc36I ACCTGC 1 cut(s) 681
AccB1I GGYRCC 2 cut(s) 601, 1202
AccB7I CCANNNNNTGG 1 cut(s) 1235
AccII CGCG 1 cut(s) 1047
AciI CCGC 3 cut(s) 236, 442, 885
AclWI GGATC 1 cut(s) 475
AcoI YGGCCR 2 cut(s) 258, 882
AcsI RAATTY 5 cut(s) 179, 404, 508, 517, 1151
AcuI CTGAAG 5 cut(s) 101, 480, 762, 852, 938
AfaI GTAC 4 cut(s) 33, 348, 753, 950
AfiI CCNNNNNNNGG 6 cut(s) 197, 304, 581, 761, 1199, 1235
AflII CTTAAG 2 cut(s) 445, 1118
AflIII ACRYGT 1 cut(s) 655
AjnI CCWGG 1 cut(s) 349
AleI CACNNNNGTG 1 cut(s) 607
Alw26I GTCTC 1 cut(s) 684
AlwI GGATC 1 cut(s) 475
AlwNI CAGNNNCTG 1 cut(s) 1019
Ama87I CYCGRG 1 cut(s) 1037
AoxI GGCC 3 cut(s) 258, 850, 882
ApeKI GCWGC 5 cut(s) 269, 620, 1013, 1016, 1027
ApoI RAATTY 5 cut(s) 179, 404, 508, 517, 1151
AspLEI GCGC 4 cut(s) 91, 190, 289, 574
AspS9I GGNCC 3 cut(s) 98, 439, 851
AsuHPI GGTGA 2 cut(s) 99, 655
AvaI CYCGRG 1 cut(s) 1037
AvaII GGWCC 2 cut(s) 98, 439
BaeGI GKGCMC 1 cut(s) 588
BalI TGGCCA 1 cut(s) 260
BanI GGYRCC 2 cut(s) 601, 1202
BbvI GCAGC 5 cut(s) 256, 607, 1025, 1028, 1039
BccI CCATC 4 cut(s) 109, 896, 1229, 1282
BceAI ACGGC 2 cut(s) 175, 1216
BciT130I CCWGG 1 cut(s) 351
BclI TGATCA 1 cut(s) 1138
BcoDI GTCTC 1 cut(s) 684
BfaI CTAG 1 cut(s) 809
BfrI CTTAAG 2 cut(s) 445, 1118
BfuAI ACCTGC 1 cut(s) 681
BglII AGATCT 1 cut(s) 547
BisI GCNGC 7 cut(s) 237, 270, 621, 885, 1014, 1017, 1028
BlsI GCNGC 7 cut(s) 238, 271, 622, 886, 1015, 1018, 1029
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 2 cut(s) 98, 439
BmeT110I CYCGRG 1 cut(s) 1037
BmgT120I GGNCC 3 cut(s) 98, 439, 851
BmiI GGNNCC 2 cut(s) 603, 1204
BmrFI CCNGG 1 cut(s) 351
BmrI ACTGGG 1 cut(s) 743
BmsI GCATC 4 cut(s) 76, 268, 274, 658
BmuI ACTGGG 1 cut(s) 743
BpmI CTGGAG 2 cut(s) 345, 483
Bpu10I CCTNAGC 1 cut(s) 303
BsaJI CCNNGG 5 cut(s) 144, 191, 575, 927, 1229
Bsc4I CCNNNNNNNGG 6 cut(s) 197, 304, 581, 761, 1199, 1235
Bse1I ACTGG 5 cut(s) 110, 362, 466, 749, 853
Bse3DI GCAATG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 5 cut(s) 144, 191, 575, 927, 1229
BseGI GGATG 3 cut(s) 1240, 1270, 1318
BseLI CCNNNNNNNGG 6 cut(s) 197, 304, 581, 761, 1199, 1235
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 3 cut(s) 317, 597, 831
BseNI ACTGG 5 cut(s) 110, 362, 466, 749, 853
BseSI GKGCMC 1 cut(s) 588
BseX3I CGGCCG 1 cut(s) 882
BseXI GCAGC 5 cut(s) 256, 607, 1025, 1028, 1039
BseYI CCCAGC 1 cut(s) 1166
Bsh1236I CGCG 1 cut(s) 1047
Bsh1285I CGRYCG 1 cut(s) 885
BshFI GGCC 3 cut(s) 260, 852, 884
BshNI GGYRCC 2 cut(s) 601, 1202
BsiEI CGRYCG 1 cut(s) 885
BsiHKCI CYCGRG 1 cut(s) 1037
BslFI GGGAC 2 cut(s) 280, 666
BslI CCNNNNNNNGG 6 cut(s) 197, 304, 581, 761, 1199, 1235
BsmAI GTCTC 1 cut(s) 684
BsmFI GGGAC 2 cut(s) 280, 666
BsnI GGCC 3 cut(s) 260, 852, 884
BsoBI CYCGRG 1 cut(s) 1037
Bsp1286I GDGCHC 1 cut(s) 588
Bsp143I GATC 5 cut(s) 467, 547, 1138, 1143, 1251
Bsp19I CCATGG 1 cut(s) 1229
BspACI CCGC 3 cut(s) 236, 442, 885
BspANI GGCC 3 cut(s) 260, 852, 884
BspCNI CTCAG 3 cut(s) 316, 598, 832
BspFNI CGCG 1 cut(s) 1047
BspLI GGNNCC 2 cut(s) 603, 1204
BspMI ACCTGC 1 cut(s) 681
BspPI GGATC 1 cut(s) 475
BspQI GCTCTTC 1 cut(s) 1214
BspT107I GGYRCC 2 cut(s) 601, 1202
BspTI CTTAAG 2 cut(s) 445, 1118
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 5 cut(s) 110, 362, 466, 749, 853
BssECI CCNNGG 5 cut(s) 144, 191, 575, 927, 1229
BssMI GATC 5 cut(s) 467, 547, 1138, 1143, 1251
BssT1I CCWWGG 4 cut(s) 144, 575, 927, 1229
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 4 cut(s) 244, 265, 590, 665
Bst6I CTCTTC 4 cut(s) 861, 983, 1214, 1254
BstAFI CTTAAG 2 cut(s) 445, 1118
BstAPI GCANNNNNTGC 2 cut(s) 407, 1082
BstDEI CTNAG 4 cut(s) 303, 606, 840, 1302
BstDSI CCRYGG 2 cut(s) 191, 1229
BstENI CCTNNNNNAGG 1 cut(s) 302
BstF5I GGATG 3 cut(s) 1240, 1270, 1318
BstFNI CGCG 1 cut(s) 1047
BstHHI GCGC 4 cut(s) 91, 190, 289, 574
BstKTI GATC 5 cut(s) 470, 550, 1141, 1146, 1254
BstMAI GTCTC 1 cut(s) 684
BstMBI GATC 5 cut(s) 467, 547, 1138, 1143, 1251
BstMCI CGRYCG 1 cut(s) 885
BstMWI GCNNNNNNNGC 6 cut(s) 78, 266, 278, 407, 773, 1082
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BstSLI GKGCMC 1 cut(s) 588
BstUI CGCG 1 cut(s) 1047
BstV1I GCAGC 5 cut(s) 256, 607, 1025, 1028, 1039
BstX2I RGATCY 1 cut(s) 547
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 1 cut(s) 547
BstZI CGGCCG 1 cut(s) 882
BsuRI GGCC 3 cut(s) 260, 852, 884
BtgI CCRYGG 2 cut(s) 191, 1229
BtsCI GGATG 3 cut(s) 1240, 1270, 1318
BtsIMutI CAGTG 2 cut(s) 117, 586
BveI ACCTGC 1 cut(s) 681
CaiI CAGNNNCTG 1 cut(s) 1019
CfoI GCGC 4 cut(s) 91, 190, 289, 574
Cfr13I GGNCC 3 cut(s) 98, 439, 851
Csp6I GTAC 4 cut(s) 32, 347, 752, 949
CviAII CATG 1 cut(s) 1230
CviQI GTAC 4 cut(s) 32, 347, 752, 949
DdeI CTNAG 4 cut(s) 303, 606, 840, 1302
DpnI GATC 5 cut(s) 469, 549, 1140, 1145, 1253
DpnII GATC 5 cut(s) 467, 547, 1138, 1143, 1251
EaeI YGGCCR 2 cut(s) 258, 882
EagI CGGCCG 1 cut(s) 882
Eam1104I CTCTTC 4 cut(s) 861, 983, 1214, 1254
EarI CTCTTC 4 cut(s) 861, 983, 1214, 1254
EclXI CGGCCG 1 cut(s) 882
Eco130I CCWWGG 4 cut(s) 144, 575, 927, 1229
Eco32I GATATC 2 cut(s) 916, 1070
Eco47I GGWCC 2 cut(s) 98, 439
Eco52I CGGCCG 1 cut(s) 882
Eco57I CTGAAG 5 cut(s) 101, 480, 762, 852, 938
Eco88I CYCGRG 1 cut(s) 1037
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 349
EcoRV GATATC 2 cut(s) 916, 1070
EcoT14I CCWWGG 4 cut(s) 144, 575, 927, 1229
ErhI CCWWGG 4 cut(s) 144, 575, 927, 1229
FaeI CATG 1 cut(s) 1233
FalI AAGNNNNNCTT 6 cut(s) 428, 460, 1112, 1144, 1172, 1204
FaqI GGGAC 2 cut(s) 280, 666
FatI CATG 1 cut(s) 1229
FbaI TGATCA 1 cut(s) 1138
Fnu4HI GCNGC 7 cut(s) 237, 270, 621, 885, 1014, 1017, 1028
FokI GGATG 2 cut(s) 1247, 1277
Fsp4HI GCNGC 7 cut(s) 237, 270, 621, 885, 1014, 1017, 1028
FspAI RTGCGCAY 1 cut(s) 288
FspBI CTAG 1 cut(s) 809
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 4 cut(s) 90, 189, 288, 573
GluI GCNGC 7 cut(s) 237, 270, 621, 885, 1014, 1017, 1028
GsaI CCCAGC 1 cut(s) 1170
GsuI CTGGAG 2 cut(s) 345, 483
HaeIII GGCC 3 cut(s) 260, 852, 884
HhaI GCGC 4 cut(s) 91, 190, 289, 574
Hin1II CATG 1 cut(s) 1233
Hin6I GCGC 4 cut(s) 89, 188, 287, 572
HinP1I GCGC 4 cut(s) 89, 188, 287, 572
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HphI GGTGA 2 cut(s) 99, 655
Hpy166II GTNNAC 2 cut(s) 200, 661
Hpy188I TCNGA 3 cut(s) 216, 1143, 1197
Hpy188III TCNNGA 7 cut(s) 152, 305, 328, 800, 830, 985, 1039
Hpy8I GTNNAC 2 cut(s) 200, 661
HpyAV CCTTC 7 cut(s) 244, 430, 610, 628, 929, 962, 1138
HpyCH4III ACNGT 4 cut(s) 244, 265, 590, 665
HpyCH4IV ACGT 1 cut(s) 657
HpyCH4V TGCA 5 cut(s) 401, 410, 671, 824, 974
HpyF10VI GCNNNNNNNGC 6 cut(s) 78, 266, 278, 407, 773, 1082
HpyF3I CTNAG 4 cut(s) 303, 606, 840, 1302
HpySE526I ACGT 1 cut(s) 657
Hsp92II CATG 1 cut(s) 1233
HspAI GCGC 4 cut(s) 89, 188, 287, 572
Ksp22I TGATCA 1 cut(s) 1138
Kzo9I GATC 5 cut(s) 467, 547, 1138, 1143, 1251
LguI GCTCTTC 1 cut(s) 1214
LmnI GCTCC 2 cut(s) 377, 731
Lsp1109I GCAGC 5 cut(s) 256, 607, 1025, 1028, 1039
LweI GCATC 4 cut(s) 76, 268, 274, 658
MaeI CTAG 1 cut(s) 809
MaeII ACGT 1 cut(s) 657
MaeIII GTNAC 1 cut(s) 835
MalI GATC 5 cut(s) 469, 549, 1140, 1145, 1253
MboI GATC 5 cut(s) 467, 547, 1138, 1143, 1251
MfeI CAATTG 1 cut(s) 783
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 1 cut(s) 588
MlsI TGGCCA 1 cut(s) 260
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 4 cut(s) 118, 149, 211, 1000
Mox20I TGGCCA 1 cut(s) 260
MscI TGGCCA 1 cut(s) 260
MseI TTAA 5 cut(s) 423, 446, 537, 1088, 1119
MslI CAYNNNNRTG 1 cut(s) 607
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 2 cut(s) 121, 1019
MspCI CTTAAG 2 cut(s) 445, 1118
MspR9I CCNGG 1 cut(s) 351
MunI CAATTG 1 cut(s) 783
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 1 cut(s) 1047
MwoI GCNNNNNNNGC 6 cut(s) 78, 266, 278, 407, 773, 1082
NcoI CCATGG 1 cut(s) 1229
NdeII GATC 5 cut(s) 467, 547, 1138, 1143, 1251
NlaIII CATG 1 cut(s) 1233
NlaIV GGNNCC 2 cut(s) 603, 1204
NmuCI GTSAC 1 cut(s) 835
NsbI TGCGCA 1 cut(s) 288
OliI CACNNNNGTG 1 cut(s) 607
PaeR7I CTCGAG 1 cut(s) 1037
PciSI GCTCTTC 1 cut(s) 1214
PcsI WCGNNNNNNNCGW 1 cut(s) 1044
PfeI GAWTC 6 cut(s) 16, 324, 708, 788, 923, 1042
PflFI GACNNNGTC 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 1235
PkrI GCNGC 7 cut(s) 238, 271, 622, 886, 1015, 1018, 1029
PleI GAGTC 4 cut(s) 118, 149, 211, 999
PpsI GAGTC 4 cut(s) 118, 149, 211, 999
Psp6I CCWGG 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 1166
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 2 cut(s) 603, 1204
PspPI GGNCC 3 cut(s) 98, 439, 851
PstNI CAGNNNCTG 1 cut(s) 1019
PsuI RGATCY 1 cut(s) 547
PsyI GACNNNGTC 1 cut(s) 204
PvuII CAGCTG 2 cut(s) 121, 1019
RsaI GTAC 4 cut(s) 33, 348, 753, 950
RsaNI GTAC 4 cut(s) 32, 347, 752, 949
RseI CAYNNNNRTG 1 cut(s) 607
SapI GCTCTTC 1 cut(s) 1214
SaqAI TTAA 5 cut(s) 423, 446, 537, 1088, 1119
SatI GCNGC 7 cut(s) 237, 270, 621, 885, 1014, 1017, 1028
Sau3AI GATC 5 cut(s) 467, 547, 1138, 1143, 1251
Sau96I GGNCC 3 cut(s) 98, 439, 851
SchI GAGTC 4 cut(s) 118, 149, 211, 1000
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 1 cut(s) 588
SfaNI GCATC 4 cut(s) 76, 268, 274, 658
Sfr274I CTCGAG 1 cut(s) 1037
SinI GGWCC 2 cut(s) 98, 439
SlaI CTCGAG 1 cut(s) 1037
SmiMI CAYNNNNRTG 1 cut(s) 607
SmlI CTYRAG 3 cut(s) 445, 1037, 1118
SmoI CTYRAG 3 cut(s) 445, 1037, 1118
SsiI CCGC 3 cut(s) 236, 442, 885
SspI AATATT 1 cut(s) 720
SspMI CTAG 1 cut(s) 809
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 4 cut(s) 144, 575, 927, 1229
TaaI ACNGT 4 cut(s) 244, 265, 590, 665
TaiI ACGT 1 cut(s) 660
TaqI TCGA 6 cut(s) 25, 158, 801, 1038, 1131, 1149
TauI GCSGC 2 cut(s) 239, 887
TfiI GAWTC 6 cut(s) 16, 324, 708, 788, 923, 1042
Tru1I TTAA 5 cut(s) 423, 446, 537, 1088, 1119
Tru9I TTAA 5 cut(s) 423, 446, 537, 1088, 1119
TscAI CASTG 2 cut(s) 117, 593
TseFI GTSAC 1 cut(s) 835
TseI GCWGC 5 cut(s) 269, 620, 1013, 1016, 1027
Tsp45I GTSAC 1 cut(s) 835
TspDTI ATGAA 1 cut(s) 540
TspGWI ACGGA 3 cut(s) 111, 984, 1260
TspRI CASTG 2 cut(s) 117, 593
Tth111I GACNNNGTC 1 cut(s) 204
Van91I CCANNNNNTGG 1 cut(s) 1235
Vha464I CTTAAG 2 cut(s) 445, 1118
VpaK11BI GGWCC 2 cut(s) 98, 439
XagI CCTNNNNNAGG 1 cut(s) 302
XapI RAATTY 5 cut(s) 179, 404, 508, 517, 1151
XcmI CCANNNNNNNNNTGG 1 cut(s) 895
XhoI CTCGAG 1 cut(s) 1037
XspI CTAG 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.