AT1G05670

Pentatricopeptide repeat-containing protein At1g05670

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005286
Physical Location & Seq
Reverse (-)
1697541 .. 1701065
3525 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05670.3

Sequence Viewer

Length: 2226 bp
ATGAAGAAGCCATTCACTGGCTTGTTGATGAAGAGAGGTACTCTTTCTAGCTTCAGAAATTTCATTCAACTCTTTTCACTTCAGTCTCGTGGACTCAGTTTCTCAACTTTAACCGATACGAGACCTTTTCCTGATTATTCACCAAAGAAAGCTTCAGTGAGAGACACTGAATTTGTACATCAAATCACTAATGTGATTAAGCTTCGTAGGGCTGAGCCTTTGAGGAGGAGTTTAAAGCCTTATGAATGCAAATTCAAAACTGATCATTTGATTTGGGTTCTGATGAAGATTAAGTGTGATTACAGGTTGGTTCTTGACTTCTTTGATTGGGCTCGCTCCCGCAGAGACTCCAACCTTGAATCTCTTTGCATTGTTATTCATTTGGCTGTGGCGTCTAAGGATCTAAAAGTGGCTCAGTCTCTTATAAGTAGTTTCTGGGAGAGACCAAAGTTGAATGTTACTGATTCCTTTGTACAGTTTTTTGATCTTTTAGTATACACTTACAAGGACTGGGGTTCGGATCCTCGTGTATTCGATGTTTTCTTCCAAGTACTTGTTGATTTCGGATTGCTCCGTGAGGCGAGAAGAGTATTTGAGAAGATGTTGAACTACGGATTGGTTTTGTCTGTTGATTCTTGCAACGTGTACCTTACCCGTCTTTCTAAAGATTGCTATAAAACTGCAACAGCAATCATAGTATTCAGGGAGTTTCCGGAAGTGGGTGTTTGCTGGAATGTTGCTTCTTATAACATCGTCATTCATTTTGTTTGTCAACTTGGGAGAATAAAAGAAGCCCACCATCTACTCCTGCTTATGGAGTTGAAGGGCTACACACCTGATGTAATCAGTTACAGTACAGTGGTAAATGGATACTGTAGGTTTGGGGAACTTGACAAGGTTTGGAAGCTCATTGAAGTAATGAAACGGAAAGGGCTGAAGCCGAATTCTTATATTTATGGTAGTATAATTGGTTTGCTCTGCAGAATTTGTAAGCTAGCCGAAGCAGAGGAGGCTTTTTCAGAGATGATAAGGCAGGGAATACTTCCTGACACTGTAGTATACACAACTCTTATTGATGGTTTTTGCAAGCGAGGGGATATTCGGGCTGCATCGAAGTTTTTTTATGAGATGCACTCTCGGGATATTACACCAGATGTTTTGACATATACTGCTATTATATCAGGGTTTTGTCAGATTGGCGACATGGTAGAGGCTGGTAAACTATTTCATGAAATGTTTTGCAAGGGTTTAGAGCCGGATAGCGTTACTTTTACTGAACTTATAAATGGATATTGCAAAGCAGGGCATATGAAAGATGCTTTTAGGGTCCACAATCACATGATTCAGGCTGGGTGCTCCCCAAATGTTGTTACATACACCACATTAATTGATGGGCTTTGTAAGGAAGGGGACTTAGATTCAGCGAATGAACTTCTCCATGAAATGTGGAAAATAGGTCTTCAGCCAAATATTTTTACTTATAATTCCATTGTCAATGGTCTATGTAAGTCGGGTAATATTGAGGAGGCAGTTAAACTTGTTGGAGAATTTGAAGCTGCGGGGCTTAATGCAGACACTGTAACTTATACAACCTTAATGGATGCCTACTGTAAATCAGGGGAGATGGATAAGGCTCAAGAGATTTTGAAGGAGATGCTCGGCAAAGGGCTTCAACCCACTATTGTCACATTCAACGTCCTAATGAATGGCTTTTGTTTGCATGGGATGTTGGAAGATGGTGAGAAGCTATTAAATTGGATGTTGGCAAAGGGTATAGCGCCTAATGCAACCACATTTAATTCTCTCGTGAAGCAATATTGTATTAGAAATAACCTGAAGGCAGCAACTGCAATTTATAAGGACATGTGTTCGCGAGGAGTAGGACCTGATGGTAAGACGTATGAGAATTTAGTTAAAGGCCATTGCAAGGCTAGGAACATGAAGGAAGCATGGTTTTTATTCCAAGAAATGAAAGGGAAAGGATTTAGTGTCTCTGTCAGCACATATAGCGTTCTCATTAAAGGTTTTTTGAAAAGGAAGAAATTCTTGGAGGCAAGAGAAGTGTTTGACCAAATGAGAAGAGAAGGATTAGCTGCGGATAAAGAAATTTTTGACTTTTTCAGTGATACAAAATACAAGGGCAAGAGGCCAGATACAATTGTAGATCCTATTGATGAAATAATAGAGAATTACCTTGTAGATGAGCAACTAAGGGGAGCCAATTAG

Protein Analysis

741

Amino Acids

84.55

Weight (kDa)

8.51

Isoelectric Point (pI)

26.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 245 - 293 2.1e-11 PPR repeat family
PPR_3 PF13812 272 - 325 4.4e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 275 - 308 1.4e-08 PPR repeat
PPR_2 PF13041 279 - 328 1.1e-12 PPR repeat family
PPR PF01535 282 - 312 1.7e-06 PPR repeat
PPR_long PF17177 305 - 436 1.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 315 - 363 2.3e-11 PPR repeat family
PPR_3 PF13812 339 - 395 9.7e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 346 - 377 7e-11 PPR repeat
PPR_2 PF13041 349 - 398 2.3e-17 PPR repeat family
PPR PF01535 352 - 382 6.3e-07 PPR repeat
PPR_1 PF12854 381 - 412 1.2e-09 PPR repeat
PPR_2 PF13041 384 - 433 4.2e-17 PPR repeat family
PPR PF01535 388 - 417 1.3e-06 PPR repeat
PPR_3 PF13812 407 - 463 6.6e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 415 - 447 5.3e-12 PPR repeat
PPR_2 PF13041 420 - 468 7.6e-20 PPR repeat family
PPR PF01535 422 - 452 1.6e-06 PPR repeat
TPR_24 PF23276 422 - 513 1.7e-08 Fungal tetratrico peptide repeats
PPR_long PF17177 437 - 572 2.6e-14 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 451 - 482 4.6e-16 PPR repeat
PPR_2 PF13041 454 - 503 7.1e-19 PPR repeat family
PPR_3 PF13812 454 - 499 3.3e-10 Pentatricopeptide repeat domain
PPR PF01535 457 - 486 2e-08 PPR repeat
PPR_1 PF12854 486 - 516 8e-12 PPR repeat
PPR_2 PF13041 489 - 535 4.4e-12 PPR repeat family
PPR PF01535 492 - 521 2.8e-06 PPR repeat
PPR_3 PF13812 513 - 569 8e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 521 - 552 2.7e-11 PPR repeat
PPR_2 PF13041 525 - 572 1.5e-17 PPR repeat family
PPR PF01535 527 - 557 5.2e-10 PPR repeat
PPR_1 PF12854 555 - 587 2.4e-08 PPR repeat
PPR_2 PF13041 559 - 607 8.5e-14 PPR repeat family
PPR_long PF17177 578 - 678 1.6e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 598 - 643 1.1e-09 PPR repeat family
PPR_3 PF13812 618 - 676 4.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 633 - 678 3e-12 PPR repeat family
PPR PF01535 667 - 697 2.8e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 425, 747, 1283, 1482, 1857
AccB7I CCANNNNNTGG 1 cut(s) 17
AccI GTMKAC 2 cut(s) 495, 1059
AccII CGCG 1 cut(s) 1873
AccIII TCCGGA 1 cut(s) 712
AciI CCGC 3 cut(s) 340, 1559, 2096
AclWI GGATC 4 cut(s) 408, 515, 528, 2159
AcsI RAATTY 9 cut(s) 58, 170, 251, 943, 984, 1547, 1906, 2042, 2106
AcuI CTGAAG 6 cut(s) 37, 65, 138, 956, 1445, 1856
AcyI GRCGYC 1 cut(s) 392
AfaI GTAC 6 cut(s) 40, 177, 474, 552, 647, 856
AfiI CCNNNNNNNGG 4 cut(s) 17, 719, 814, 1927
AflIII ACRYGT 2 cut(s) 642, 1863
AjuI GAANNNNNNNTTGG 6 cut(s) 136, 168, 599, 631, 2030, 2062
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 8 cut(s) 51, 152, 202, 907, 994, 1556, 1747, 2093
AluI AGCT 8 cut(s) 51, 152, 202, 907, 994, 1556, 1747, 2093
Alw21I GWGCWC 1 cut(s) 1358
Alw26I GTCTC 7 cut(s) 90, 115, 156, 339, 423, 436, 1996
AlwI GGATC 4 cut(s) 408, 515, 528, 2159
AlwNI CAGNNNCTG 2 cut(s) 1577, 1847
Ama87I CYCGRG 1 cut(s) 1137
Aor13HI TCCGGA 1 cut(s) 712
AoxI GGCC 2 cut(s) 1918, 2147
ApeKI GCWGC 4 cut(s) 1106, 1556, 1841, 2093
ApoI RAATTY 9 cut(s) 58, 170, 251, 943, 984, 1547, 1906, 2042, 2106
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AseI ATTAAT 1 cut(s) 1385
Asp700I GAANNNNTTC 2 cut(s) 11, 2042
AspLEI GCGC 1 cut(s) 1780
AspS9I GGNCC 2 cut(s) 1327, 1883
AsuHPI GGTGA 2 cut(s) 132, 1751
AsuNHI GCTAGC 1 cut(s) 994
AvaI CYCGRG 1 cut(s) 1137
AvaII GGWCC 2 cut(s) 1327, 1883
BaeI ACNNNNGTAYC 2 cut(s) 2145, 2178
BamHI GGATCC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 334
BauI CACGAG 3 cut(s) 87, 525, 1805
BbsI GAAGAC 1 cut(s) 1451
Bbv12I GWGCWC 1 cut(s) 1358
BbvI GCAGC 4 cut(s) 1093, 1543, 1853, 2080
BccI CCATC 6 cut(s) 807, 1070, 1385, 1618, 1730, 1883
BciVI GTATCC 1 cut(s) 863
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 7 cut(s) 90, 115, 156, 339, 423, 436, 1996
BfaI CTAG 3 cut(s) 48, 995, 1932
BfmI CTRYAG 3 cut(s) 874, 979, 1053
BfoI RGCGCY 1 cut(s) 1781
BfuI GTATCC 1 cut(s) 863
BisI GCNGC 4 cut(s) 1107, 1557, 1842, 2094
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 4 cut(s) 1108, 1558, 1843, 2095
BmcAI AGTACT 1 cut(s) 552
Bme18I GGWCC 2 cut(s) 1327, 1883
BmeT110I CYCGRG 1 cut(s) 1137
BmgT120I GGNCC 2 cut(s) 1327, 1883
BmiI GGNNCC 3 cut(s) 522, 1328, 2218
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 5 cut(s) 1118, 1119, 1306, 1591, 1644
BmtI GCTAGC 1 cut(s) 998
BmuI ACTGGG 1 cut(s) 520
BpiI GAAGAC 1 cut(s) 1451
BplI GAGNNNNNCTC 4 cut(s) 25, 57, 1118, 1150
Bpu1102I GCTNAGC 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 1620
BsaHI GRCGYC 1 cut(s) 392
BsaI GGTCTC 2 cut(s) 115, 436
BsaWI WCCGGW 1 cut(s) 712
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 719, 814, 1927
Bse1I ACTGG 2 cut(s) 22, 515
Bse3DI GCAATG 1 cut(s) 1921
BseAI TCCGGA 1 cut(s) 712
BseGI GGATG 3 cut(s) 1606, 1731, 1764
BseLI CCNNNNNNNGG 4 cut(s) 17, 719, 814, 1927
BseMI GCAATG 1 cut(s) 1921
BseMII CTCAG 3 cut(s) 109, 204, 428
BseNI ACTGG 2 cut(s) 22, 515
BseRI GAGGAG 5 cut(s) 238, 241, 1022, 1538, 1890
BseXI GCAGC 4 cut(s) 1093, 1543, 1853, 2080
BseYI CCCAGC 1 cut(s) 1349
Bsh1236I CGCG 1 cut(s) 1873
BshFI GGCC 2 cut(s) 1920, 2149
BsiHKAI GWGCWC 1 cut(s) 1358
BsiHKCI CYCGRG 1 cut(s) 1137
BsiSI CCGG 2 cut(s) 713, 1256
BslFI GGGAC 1 cut(s) 1424
BslI CCNNNNNNNGG 4 cut(s) 17, 719, 814, 1927
BsmAI GTCTC 7 cut(s) 90, 115, 156, 339, 423, 436, 1996
BsmFI GGGAC 1 cut(s) 1424
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 2 cut(s) 1920, 2149
Bso31I GGTCTC 2 cut(s) 115, 436
BsoBI CYCGRG 1 cut(s) 1137
Bsp1286I GDGCHC 2 cut(s) 334, 1358
Bsp13I TCCGGA 1 cut(s) 712
Bsp1407I TGTACA 2 cut(s) 175, 472
Bsp143I GATC 5 cut(s) 262, 400, 484, 520, 2164
Bsp1720I GCTNAGC 1 cut(s) 213
Bsp68I TCGCGA 1 cut(s) 1873
BspACI CCGC 3 cut(s) 340, 1559, 2096
BspANI GGCC 2 cut(s) 1920, 2149
BspCNI CTCAG 3 cut(s) 108, 205, 427
BspEI TCCGGA 1 cut(s) 712
BspFNI CGCG 1 cut(s) 1873
BspHI TCATGA 1 cut(s) 1228
BspLI GGNNCC 3 cut(s) 522, 1328, 2218
BspMAI CTGCAG 1 cut(s) 983
BspOI GCTAGC 1 cut(s) 998
BspPI GGATC 4 cut(s) 408, 515, 528, 2159
BspTNI GGTCTC 2 cut(s) 115, 436
BsrDI GCAATG 1 cut(s) 1921
BsrGI TGTACA 2 cut(s) 175, 472
BsrI ACTGG 2 cut(s) 22, 515
BssMI GATC 5 cut(s) 262, 400, 484, 520, 2164
BssNAI GTATAC 2 cut(s) 496, 1060
BssNI GRCGYC 1 cut(s) 392
BssSI CACGAG 3 cut(s) 87, 525, 1805
Bst1107I GTATAC 2 cut(s) 496, 1060
Bst2BI CACGAG 3 cut(s) 87, 525, 1805
Bst4CI ACNGT 7 cut(s) 477, 854, 859, 875, 1054, 1579, 1610
Bst6I CTCTTC 3 cut(s) 26, 580, 2074
BstACI GRCGYC 1 cut(s) 392
BstAPI GCANNNNNTGC 1 cut(s) 1847
BstAUI TGTACA 2 cut(s) 175, 472
BstC8I GCNNGC 3 cut(s) 334, 996, 1088
BstDEI CTNAG 6 cut(s) 95, 213, 396, 414, 1414, 2210
BstF5I GGATG 3 cut(s) 1606, 1731, 1764
BstFNI CGCG 1 cut(s) 1873
BstH2I RGCGCY 1 cut(s) 1781
BstHHI GCGC 1 cut(s) 1780
BstKTI GATC 5 cut(s) 265, 403, 487, 523, 2167
BstMAI GTCTC 7 cut(s) 90, 115, 156, 339, 423, 436, 1996
BstMBI GATC 5 cut(s) 262, 400, 484, 520, 2164
BstMWI GCNNNNNNNGC 4 cut(s) 1010, 1784, 1847, 2007
BstNSI RCATGY 1 cut(s) 1867
BstSFI CTRYAG 3 cut(s) 874, 979, 1053
BstUI CGCG 1 cut(s) 1873
BstV1I GCAGC 4 cut(s) 1093, 1543, 1853, 2080
BstV2I GAAGAC 1 cut(s) 1451
BstX2I RGATCY 3 cut(s) 400, 520, 2164
BstYI RGATCY 3 cut(s) 400, 520, 2164
BstZ17I GTATAC 2 cut(s) 496, 1060
BsuI GTATCC 1 cut(s) 863
BsuRI GGCC 2 cut(s) 1920, 2149
BtsCI GGATG 3 cut(s) 1606, 1731, 1764
BtsIMutI CAGTG 7 cut(s) 15, 162, 165, 864, 1050, 1575, 2128
BtuMI TCGCGA 1 cut(s) 1873
Cac8I GCNNGC 3 cut(s) 334, 996, 1088
CaiI CAGNNNCTG 2 cut(s) 1577, 1847
CciI TCATGA 1 cut(s) 1228
CfoI GCGC 1 cut(s) 1780
Cfr13I GGNCC 2 cut(s) 1327, 1883
CseI GACGC 1 cut(s) 381
Csp6I GTAC 6 cut(s) 39, 176, 473, 551, 646, 855
CspCI CAANNNNNGTGG 2 cut(s) 1369, 1404
CviAII CATG 8 cut(s) 1204, 1229, 1339, 1439, 1721, 1864, 1939, 1950
CviQI GTAC 6 cut(s) 39, 176, 473, 551, 646, 855
DdeI CTNAG 6 cut(s) 95, 213, 396, 414, 1414, 2210
DpnI GATC 5 cut(s) 264, 402, 486, 522, 2166
DpnII GATC 5 cut(s) 262, 400, 484, 520, 2164
DraI TTTAAA 1 cut(s) 234
Eam1104I CTCTTC 3 cut(s) 26, 580, 2074
EarI CTCTTC 3 cut(s) 26, 580, 2074
Eco24I GRGCYC 1 cut(s) 334
Eco31I GGTCTC 2 cut(s) 115, 436
Eco47I GGWCC 2 cut(s) 1327, 1883
Eco57I CTGAAG 6 cut(s) 37, 65, 138, 956, 1445, 1856
Eco88I CYCGRG 1 cut(s) 1137
EcoO109I RGGNCCY 1 cut(s) 1883
EcoRI GAATTC 1 cut(s) 943
EcoT38I GRGCYC 1 cut(s) 334
FaeI CATG 8 cut(s) 1207, 1232, 1342, 1442, 1724, 1867, 1942, 1953
FalI AAGNNNNNCTT 2 cut(s) 2030, 2062
FaqI GGGAC 1 cut(s) 1424
FatI CATG 8 cut(s) 1203, 1228, 1338, 1438, 1720, 1863, 1938, 1949
FauI CCCGC 2 cut(s) 347, 1552
FauNDI CATATG 1 cut(s) 1308
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 2 cut(s) 495, 1059
Fnu4HI GCNGC 4 cut(s) 1107, 1557, 1842, 2094
FokI GGATG 3 cut(s) 1613, 1738, 1771
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 4 cut(s) 1107, 1557, 1842, 2094
FspBI CTAG 3 cut(s) 48, 995, 1932
GlaI GCGC 1 cut(s) 1779
GluI GCNGC 4 cut(s) 1107, 1557, 1842, 2094
GsaI CCCAGC 1 cut(s) 1353
HaeII RGCGCY 1 cut(s) 1781
HaeIII GGCC 2 cut(s) 1920, 2149
HapII CCGG 2 cut(s) 713, 1256
HgaI GACGC 1 cut(s) 381
HhaI GCGC 1 cut(s) 1780
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 8 cut(s) 1207, 1232, 1342, 1442, 1724, 1867, 1942, 1953
Hin6I GCGC 1 cut(s) 1778
HinP1I GCGC 1 cut(s) 1778
HincII GTYRAC 1 cut(s) 773
HindII GTYRAC 1 cut(s) 773
HindIII AAGCTT 2 cut(s) 150, 200
HinfI GANTC 7 cut(s) 93, 347, 359, 464, 632, 1342, 1418
HpaII CCGG 2 cut(s) 713, 1256
HphI GGTGA 2 cut(s) 132, 1751
Hpy166II GTNNAC 7 cut(s) 92, 496, 646, 773, 1060, 1220, 1330
Hpy188I TCNGA 6 cut(s) 56, 282, 520, 566, 1021, 1194
Hpy188III TCNNGA 9 cut(s) 131, 314, 713, 1046, 1139, 1229, 1637, 1807, 1872
Hpy8I GTNNAC 7 cut(s) 92, 496, 646, 773, 1060, 1220, 1330
HpyAV CCTTC 6 cut(s) 817, 1400, 1642, 1831, 1936, 2078
HpyCH4III ACNGT 7 cut(s) 477, 854, 859, 875, 1054, 1579, 1610
HpyCH4IV ACGT 3 cut(s) 642, 1695, 1898
HpyF10VI GCNNNNNNNGC 4 cut(s) 1010, 1784, 1847, 2007
HpyF3I CTNAG 6 cut(s) 95, 213, 396, 414, 1414, 2210
HpySE526I ACGT 3 cut(s) 642, 1695, 1898
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 8 cut(s) 1207, 1232, 1342, 1442, 1724, 1867, 1942, 1953
HspAI GCGC 1 cut(s) 1778
Kpn2I TCCGGA 1 cut(s) 712
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 5 cut(s) 262, 400, 484, 520, 2164
LmnI GCTCC 4 cut(s) 341, 576, 1361, 2216
Lsp1109I GCAGC 4 cut(s) 1093, 1543, 1853, 2080
LweI GCATC 5 cut(s) 1118, 1119, 1306, 1591, 1644
MaeI CTAG 3 cut(s) 48, 995, 1932
MaeII ACGT 3 cut(s) 642, 1695, 1898
MaeIII GTNAC 6 cut(s) 457, 848, 1264, 1369, 1579, 1684
MalI GATC 5 cut(s) 264, 402, 486, 522, 2166
MboI GATC 5 cut(s) 262, 400, 484, 520, 2164
MfeI CAATTG 1 cut(s) 2157
MflI RGATCY 3 cut(s) 400, 520, 2164
MhlI GDGCHC 2 cut(s) 334, 1358
MlyI GAGTC 2 cut(s) 87, 341
MmeI TCCRAC 3 cut(s) 375, 1522, 1710
MroI TCCGGA 1 cut(s) 712
MroXI GAANNNNTTC 2 cut(s) 11, 2042
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 2 cut(s) 713, 1256
MunI CAATTG 1 cut(s) 2157
Mva1269I GAATGC 1 cut(s) 251
MvnI CGCG 1 cut(s) 1873
MwoI GCNNNNNNNGC 4 cut(s) 1010, 1784, 1847, 2007
NdeI CATATG 1 cut(s) 1308
NdeII GATC 5 cut(s) 262, 400, 484, 520, 2164
NheI GCTAGC 1 cut(s) 994
NlaIII CATG 8 cut(s) 1207, 1232, 1342, 1442, 1724, 1867, 1942, 1953
NlaIV GGNNCC 3 cut(s) 522, 1328, 2218
NmeAIII GCCGAG 1 cut(s) 1638
NmuCI GTSAC 1 cut(s) 1684
NruI TCGCGA 1 cut(s) 1873
NspI RCATGY 1 cut(s) 1867
OliI CACNNNNGTG 1 cut(s) 191
PagI TCATGA 1 cut(s) 1228
PciI ACATGT 1 cut(s) 1863
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 2 cut(s) 11, 2042
PfeI GAWTC 5 cut(s) 359, 464, 632, 1342, 1418
PflMI CCANNNNNTGG 1 cut(s) 17
PkrI GCNGC 4 cut(s) 1108, 1558, 1843, 2095
PleI GAGTC 2 cut(s) 87, 341
PpsI GAGTC 2 cut(s) 87, 341
PpuMI RGGWCCY 1 cut(s) 1883
PscI ACATGT 1 cut(s) 1863
PshBI ATTAAT 1 cut(s) 1385
PsiI TTATAA 5 cut(s) 425, 747, 1283, 1482, 1857
Psp5II RGGWCCY 1 cut(s) 1883
PspFI CCCAGC 1 cut(s) 1349
PspN4I GGNNCC 3 cut(s) 522, 1328, 2218
PspPI GGNCC 2 cut(s) 1327, 1883
PspPPI RGGWCCY 1 cut(s) 1883
PstI CTGCAG 1 cut(s) 983
PstNI CAGNNNCTG 2 cut(s) 1577, 1847
PsuI RGATCY 3 cut(s) 400, 520, 2164
RruI TCGCGA 1 cut(s) 1873
RsaI GTAC 6 cut(s) 40, 177, 474, 552, 647, 856
RsaNI GTAC 6 cut(s) 39, 176, 473, 551, 646, 855
RseI CAYNNNNRTG 1 cut(s) 191
SatI GCNGC 4 cut(s) 1107, 1557, 1842, 2094
Sau3AI GATC 5 cut(s) 262, 400, 484, 520, 2164
Sau96I GGNCC 2 cut(s) 1327, 1883
ScaI AGTACT 1 cut(s) 552
SchI GAGTC 2 cut(s) 87, 341
SduI GDGCHC 2 cut(s) 334, 1358
SfaNI GCATC 5 cut(s) 1118, 1119, 1306, 1591, 1644
SfcI CTRYAG 3 cut(s) 874, 979, 1053
SinI GGWCC 2 cut(s) 1327, 1883
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 1635
SmoI CTYRAG 1 cut(s) 1635
SsiI CCGC 3 cut(s) 340, 1559, 2096
SspI AATATT 3 cut(s) 1471, 1519, 1817
SspMI CTAG 3 cut(s) 48, 995, 1932
TaaI ACNGT 7 cut(s) 477, 854, 859, 875, 1054, 1579, 1610
TaiI ACGT 3 cut(s) 645, 1698, 1901
TaqI TCGA 2 cut(s) 534, 1112
TatI WGTACW 4 cut(s) 175, 472, 550, 854
TfiI GAWTC 5 cut(s) 359, 464, 632, 1342, 1418
TscAI CASTG 7 cut(s) 22, 162, 172, 864, 1057, 1582, 2128
TseFI GTSAC 1 cut(s) 1684
TseI GCWGC 4 cut(s) 1106, 1556, 1841, 2093
Tsp45I GTSAC 1 cut(s) 1684
TspGWI ACGGA 3 cut(s) 563, 627, 940
TspRI CASTG 7 cut(s) 22, 162, 172, 864, 1057, 1582, 2128
Van91I CCANNNNNTGG 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 1327, 1883
VspI ATTAAT 1 cut(s) 1385
XapI RAATTY 9 cut(s) 58, 170, 251, 943, 984, 1547, 1906, 2042, 2106
XceI RCATGY 1 cut(s) 1867
XmiI GTMKAC 2 cut(s) 495, 1059
XmnI GAANNNNTTC 2 cut(s) 11, 2042
XspI CTAG 3 cut(s) 48, 995, 1932
ZrmI AGTACT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.