Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005286

Physical Location & Seq

Genomic Coordinates Reverse (-)

1506597 .. 1508840

Gene Structure 2244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005758

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2244 bp

ATGAAGAGGTGCACCATCTTCTCAGACTATTGTTGTCAGATCTTCACTCAGCGTCCCCGGTTAAATCATGGTCTAAACGGTTCGGTGTTGTTCTTTAGAAGTTTAAGCCATATGCTCTCATCTGGCTCGACAGATAAGAGGCCTTTTCCTGATTATTCCCCCAAGAGACCGACCATCAAGGATGCCGAACTTGTCCATGGCATCTCCACCACAATAAAGTTGCGTAGCTCTGAGCCCTTGCGCCGGATTCTGAAGCCTTATGAATCAAAGTTCAGGTCTGACCATCTAATTTGGGTTCTCATGAAGATTAAGAGCGAGTATAAGCTGGTTTTGGATTTGTTTGATTGGGCATGCTTACGAAGGGATCCAACACTAGAAGCTCGTTGCATTATTGTGCACATTGCCGCAACATCAAATGATTTCAAAACTGCTCATGGGCTTATCCATGATTTTTGGTCAAAACCCAAATTAGATGTCAGTCTTTCATGCACTCACTTTGCTGACAGGTTGATATACACTTACAAGGACTGGGGTTCAGACCCCCATGTGTTCGATGTTTTCTTCCAAGTCCTTGTTGAACTTGGGATGCTCAAAGAAGCAAGAAAACATTTTGAGAAGCTGTTGAGTTATGGGTTGGTTATCTCTGTTGATTCCTGTAATTTATTTCTTTCTCGTTTATCTAGTACATCTGATGGAATTGAGACGGCAATAAATTTTTTCAATGAATATCTTGAAGTGGGTGTTCATTGGAATACGTTTTCATCTAATATTATCATTCATTCTCTCTGTCGATTAGGGAAGATAAAAGAAGCCCACCATTTACTACTGCAAATGGAGTTGAAGGGTTGTTTGCCTGATGTTGTAAGTTATAGTACTTTAATCAGCCGATATTGTTATGTTGGAGAACTACAGAATGTGTTGAAGCTCATAGAAGAGATGAAAAGTAAAGGATTGAAGCCAAATTCCTATACCTATAACAGCATATTACTTCTTCTCTGCAAGACTGGAAAACTATCTGAAGCAGAAATGATATTGAGGGAAATGATGGTTGTGGGAGTACGTCCTGATAATGTTATCTACACAACTCTAATTGATGGTTTCTGTAAGTTAGGGAATGTTCCAGCTGCTTGGAGGCTGTTTGATGAAATGCGGGTTAGGAAAGTTATCCCAGATTTTATAACTTATACTACTATTATTCATGGATTCTGTCGAACAGGGAAGATGATGGAAGCAGATAAGCTCTTCCATGAAATGGTTAGTAAAGGGTTGGAACCAGATGAAGTTACTCATACAGCACTGATTGATGGTTATTGCAAAGCAGGTCAGATGAAAGAGGCATTTTCTCTTCACAACCAGATGGTTAGGATTGGGCTTAGCCCAAATGTTGTCACTTATACTGCACTGGCTGATGGTCTTTGTAAACGAGGGGAAGTAGATGTAGCAAACGAACTTCTTCATGAGGTGTGTAGGAAAGGCCTTCAACTTAATGTCTGCACTTACAACTCGATCGTTAATGGTCTTTGTAAATCAGGAAATATAGGGCAAGCAGAAGAATTGATGGAACAAATGGAGGTTGCAGGGCCCCATCCTGATACTATTACTTATACTACTCTCATGGATGCATACTGTAAGACAGGGGAGATTGCTAAGGCTCACAAGGTCCTGCATGAGATGCTGGATAAAGGACTTCAACCTACAGTTGTTACATTTAATGTACTGATGAATGGCTTTTGTATGTCAGGAATGCTAGAAGATGGTGAGAGGTTACTTAAATGGATGTTGGAGAAGAATATTGTGCCTAATGCCACCACCTACAATTCTCTAATGAAGCAGTACTGCATCAGAAATAACATGCGAGCTACAACTGAGATGTTCAAAGGCATGTCTGCTAGTGGAGTGATGCCCGATAGCAACACGTATAACATTTTAATAAAAGGGCATTGTAAAGCACGGAATATGAAGGAGGCATGGTTTTTGCACAAAGAAATGGCAGGGAAGGGATTTATTCTTACAGCTAGTTCTTACATTGCACTTATTAATGGTTTTTTTAAGAGGAAGAAGTTTGTGGAGGCAAGGGAACTCTTTGAAGAGATGAGAAGACAAGGTTTGGTAGCAAATAGAGAAATATATAACATCTTTGTTGATATGAACTATGAAGAAGGGAACATGGACATTACTCTTGATCTTTGTGACGAAGTTATAGAGAATTGTCTTGTTGGCGAGTCCAAAAATGAAGACACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0012505 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

748

Amino Acids

85.17

Weight (kDa)

7.5

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	251 - 298	3.3e-12	PPR repeat family
PPR_3	PF13812	274 - 330	1.6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	281 - 314	1.9e-07	PPR repeat
PPR_2	PF13041	285 - 334	2.3e-15	PPR repeat family
PPR_long	PF17177	307 - 445	7.8e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	316 - 348	2.6e-08	PPR repeat
PPR_2	PF13041	324 - 369	2.8e-11	PPR repeat family
PPR_3	PF13812	344 - 400	6.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	352 - 384	1.2e-11	PPR repeat
PPR_2	PF13041	355 - 404	5e-18	PPR repeat family
PPR	PF01535	358 - 387	1.8e-07	PPR repeat
PPR_1	PF12854	389 - 419	4.6e-11	PPR repeat
PPR_2	PF13041	390 - 439	4e-19	PPR repeat family
PPR	PF01535	393 - 423	2.8e-09	PPR repeat
PPR_3	PF13812	413 - 468	1.9e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	420 - 519	2.4e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	421 - 454	7.7e-13	PPR repeat
PPR_2	PF13041	428 - 474	2e-16	PPR repeat family
PPR	PF01535	428 - 458	1.1e-08	PPR repeat
PPR_long	PF17177	443 - 578	1.7e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	457 - 487	2.1e-09	PPR repeat
PPR_2	PF13041	462 - 509	3e-12	PPR repeat family
PPR_1	PF12854	491 - 524	3.9e-12	PPR repeat
PPR_2	PF13041	496 - 544	4.1e-15	PPR repeat family
PPR	PF01535	499 - 527	5.6e-06	PPR repeat
PPR_3	PF13812	519 - 576	1.2e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	527 - 558	7.7e-10	PPR repeat
PPR_2	PF13041	530 - 578	1.5e-18	PPR repeat family
PPR	PF01535	533 - 563	7.7e-08	PPR repeat
PPR_1	PF12854	561 - 593	3.7e-08	PPR repeat
PPR_2	PF13041	565 - 613	1.9e-14	PPR repeat family
PPR_long	PF17177	583 - 679	8.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	589 - 645	6.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	603 - 649	2.2e-12	PPR repeat family
PPR_1	PF12854	632 - 663	1.1e-08	PPR repeat
PPR	PF01535	639 - 668	8.7e-07	PPR repeat
PPR_2	PF13041	639 - 682	6.8e-09	PPR repeat family
PPR_2	PF13041	673 - 715	1.1e-06	PPR repeat family
PPR	PF01535	674 - 703	5.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05670 AT1G05670 AT1G05670
fragaria_vesca	FvH4_4g35550 FvH4_4g35550
malus_domestica	MD13G1082300.v1.1 MD16G1081400.v1.1
prunus_persica	Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1
pyrus_communis	pycom13g07090 pycom16g07020
rosa_chinensis	RchiOBHm_Chr4g0445191
rosa_laevigata	RLG00000005758
rosa_multiflora	Rmu_co8367507.1_g000001 Rmu_sc0000050.1_g000035
rosa_roxburghii	Rroxscaffold_5G00385710
rosa_rugosa	Rorug04G0359800 Rorug04G0359900
rosa_samantha	Rh4AG420700 Rh4BG432600 Rh4CG447200 Rh4DG428700
rosa_wichuraiana	Rw4G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1178
Acc36I	ACCTGC	1 cut(s)	1310
AccB7I	CCANNNNNTGG	1 cut(s)	1252
AciI	CCGC	2 cut(s)	405, 1150
AclWI	GGATC	2 cut(s)	359, 372
AcsI	RAATTY	2 cut(s)	712, 961
AcuI	CTGAAG	2 cut(s)	272, 1038
AfaI	GTAC	5 cut(s)	685, 874, 1059, 1716, 1835
AfiI	CCNNNNNNNGG	2 cut(s)	243, 1252
AflIII	ACRYGT	1 cut(s)	1914
AluBI	AGCT	9 cut(s)	228, 325, 380, 619, 925, 1124, 1240, 1859, 2015
AluI	AGCT	9 cut(s)	228, 325, 380, 619, 925, 1124, 1240, 1859, 2015
Alw21I	GWGCWC	2 cut(s)	14, 399
Alw26I	GTCTC	2 cut(s)	160, 695
Alw44I	GTGCAC	2 cut(s)	10, 395
AlwI	GGATC	2 cut(s)	359, 372
AoxI	GGCC	3 cut(s)	140, 1474, 1580
ApaI	GGGCCC	1 cut(s)	1584
ApaLI	GTGCAC	2 cut(s)	10, 395
ApeKI	GCWGC	1 cut(s)	1124
ApoI	RAATTY	2 cut(s)	712, 961
ArsI	GACNNNNNNTTYG	4 cut(s)	260, 292, 459, 491
AseI	ATTAAT	1 cut(s)	2037
Asp700I	GAANNNNTTC	1 cut(s)	1452
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	3 cut(s)	1580, 1581, 1660
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	1769
AvaII	GGWCC	1 cut(s)	1660
BaeGI	GKGCMC	3 cut(s)	14, 399, 1584
BamHI	GGATCC	1 cut(s)	364
BanII	GRGCYC	2 cut(s)	237, 1584
BbsI	GAAGAC	1 cut(s)	2104
Bbv12I	GWGCWC	2 cut(s)	14, 399
BbvI	GCAGC	1 cut(s)	1111
BceAI	ACGGC	1 cut(s)	720
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	160, 695
BfaI	CTAG	5 cut(s)	374, 681, 1748, 1890, 2016
BfmI	CTRYAG	2 cut(s)	908, 1695
BfuAI	ACCTGC	1 cut(s)	1310
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	2 cut(s)	405, 1125
BlpI	GCTNAGC	1 cut(s)	1373
BlsI	GCNGC	2 cut(s)	406, 1126
BmcAI	AGTACT	2 cut(s)	874, 1835
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	1660
BmgT120I	GGNCC	3 cut(s)	1580, 1581, 1660
BmiI	GGNNCC	4 cut(s)	366, 1272, 1582, 1583
BmrFI	CCNGG	1 cut(s)	58
BmrI	ACTGGG	1 cut(s)	538
BmsI	GCATC	7 cut(s)	172, 210, 576, 1609, 1662, 1848, 1890
BmuI	ACTGGG	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	2104
Bpu10I	CCTNAGC	1 cut(s)	1647
Bpu1102I	GCTNAGC	1 cut(s)	1373
BpuMI	CCSGG	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	1917
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	56, 196
BsaXI	ACNNNNNCTCC	2 cut(s)	1955, 1985
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 1252
Bse1I	ACTGG	3 cut(s)	533, 1009, 1407
Bse3DI	GCAATG	2 cut(s)	399, 2025
BseDI	CCNNGG	2 cut(s)	56, 196
BseGI	GGATG	5 cut(s)	187, 591, 1585, 1624, 1782
BseLI	CCNNNNNNNGG	2 cut(s)	243, 1252
BseMI	GCAATG	2 cut(s)	399, 2025
BseMII	CTCAG	4 cut(s)	36, 62, 222, 1857
BseNI	ACTGG	3 cut(s)	533, 1009, 1407
BseSI	GKGCMC	3 cut(s)	14, 399, 1584
BseXI	GCAGC	1 cut(s)	1111
BsgI	GTGCAG	2 cut(s)	1383, 1477
Bsh1285I	CGRYCG	1 cut(s)	1509
BshFI	GGCC	3 cut(s)	142, 1476, 1582
BsiEI	CGRYCG	1 cut(s)	1509
BsiHKAI	GWGCWC	2 cut(s)	14, 399
BsiSI	CCGG	2 cut(s)	58, 244
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	243, 1252
BsmAI	GTCTC	2 cut(s)	160, 695
BsmBI	CGTCTC	1 cut(s)	695
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	1749
BsnI	GGCC	3 cut(s)	142, 1476, 1582
Bso31I	GGTCTC	1 cut(s)	160
Bsp120I	GGGCCC	1 cut(s)	1580
Bsp1286I	GDGCHC	4 cut(s)	14, 237, 399, 1584
Bsp143I	GATC	4 cut(s)	39, 364, 1506, 2182
Bsp1720I	GCTNAGC	1 cut(s)	1373
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	2 cut(s)	405, 1150
BspANI	GGCC	3 cut(s)	142, 1476, 1582
BspCNI	CTCAG	4 cut(s)	35, 61, 223, 1858
BspHI	TCATGA	2 cut(s)	300, 1456
BspLI	GGNNCC	4 cut(s)	366, 1272, 1582, 1583
BspMI	ACCTGC	1 cut(s)	1310
BspPI	GGATC	2 cut(s)	359, 372
BspQI	GCTCTTC	1 cut(s)	1247
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	2 cut(s)	399, 2025
BsrI	ACTGG	3 cut(s)	533, 1009, 1407
BssECI	CCNNGG	2 cut(s)	56, 196
BssMI	GATC	4 cut(s)	39, 364, 1506, 2182
BssT1I	CCWWGG	1 cut(s)	196
Bst4CI	ACNGT	3 cut(s)	80, 1628, 1699
Bst6I	CTCTTC	4 cut(s)	927, 1247, 1350, 2082
BstAPI	GCANNNNNTGC	1 cut(s)	1672
BstBAI	YACGTR	1 cut(s)	1917
BstC8I	GCNNGC	3 cut(s)	352, 1545, 1857
BstDEI	CTNAG	6 cut(s)	22, 48, 231, 1373, 1647, 1866
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	5 cut(s)	187, 591, 1585, 1624, 1782
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	4 cut(s)	42, 367, 1509, 2185
BstMAI	GTCTC	2 cut(s)	160, 695
BstMBI	GATC	4 cut(s)	39, 364, 1506, 2182
BstMCI	CGRYCG	1 cut(s)	1509
BstMWI	GCNNNNNNNGC	1 cut(s)	1672
BstNSI	RCATGY	3 cut(s)	354, 1855, 1885
BstSCI	CCNGG	1 cut(s)	56
BstSFI	CTRYAG	2 cut(s)	908, 1695
BstSLI	GKGCMC	3 cut(s)	14, 399, 1584
BstV1I	GCAGC	1 cut(s)	1111
BstV2I	GAAGAC	1 cut(s)	2104
BstX2I	RGATCY	2 cut(s)	39, 364
BstXI	CCANNNNNNTGG	1 cut(s)	1128
BstYI	RGATCY	2 cut(s)	39, 364
BsuRI	GGCC	3 cut(s)	142, 1476, 1582
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	5 cut(s)	187, 591, 1585, 1624, 1782
BtsIMutI	CAGTG	2 cut(s)	1295, 1400
BveI	ACCTGC	1 cut(s)	1310
Cac8I	GCNNGC	3 cut(s)	352, 1545, 1857
CciI	TCATGA	2 cut(s)	300, 1456
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	3 cut(s)	1580, 1581, 1660
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	5 cut(s)	684, 873, 1058, 1715, 1834
CviQI	GTAC	5 cut(s)	684, 873, 1058, 1715, 1834
DdeI	CTNAG	6 cut(s)	22, 48, 231, 1373, 1647, 1866
DpnI	GATC	4 cut(s)	41, 366, 1508, 2184
DpnII	GATC	4 cut(s)	39, 364, 1506, 2182
Eam1104I	CTCTTC	4 cut(s)	927, 1247, 1350, 2082
EarI	CTCTTC	4 cut(s)	927, 1247, 1350, 2082
Eco130I	CCWWGG	1 cut(s)	196
Eco147I	AGGCCT	2 cut(s)	142, 1476
Eco24I	GRGCYC	2 cut(s)	237, 1584
Eco31I	GGTCTC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	1660
Eco57I	CTGAAG	2 cut(s)	272, 1038
EcoO109I	RGGNCCY	3 cut(s)	1580, 1581, 1660
EcoT14I	CCWWGG	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	1624
EcoT38I	GRGCYC	2 cut(s)	237, 1584
ErhI	CCWWGG	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	695
FaqI	GGGAC	1 cut(s)	39
FauI	CCCGC	1 cut(s)	1143
FauNDI	CATATG	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	405, 1125
FokI	GGATG	5 cut(s)	194, 598, 1572, 1631, 1789
FriOI	GRGCYC	2 cut(s)	237, 1584
Fsp4HI	GCNGC	2 cut(s)	405, 1125
FspBI	CTAG	5 cut(s)	374, 681, 1748, 1890, 2016
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	2 cut(s)	405, 1125
HaeIII	GGCC	3 cut(s)	142, 1476, 1582
HapII	CCGG	2 cut(s)	58, 244
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	243
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	5 cut(s)	247, 263, 650, 1203, 2222
HpaII	CCGG	2 cut(s)	58, 244
HphI	GGTGA	1 cut(s)	1769
Hpy166II	GTNNAC	3 cut(s)	12, 397, 1421
Hpy188III	TCNNGA	9 cut(s)	149, 301, 731, 1064, 1457, 1530, 1589, 1740, 2180
Hpy8I	GTNNAC	3 cut(s)	12, 397, 1421
HpyAV	CCTTC	6 cut(s)	354, 835, 1487, 1954, 1990, 2153
HpyCH4III	ACNGT	3 cut(s)	80, 1628, 1699
HpyCH4IV	ACGT	3 cut(s)	755, 1060, 1916
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1672
HpyF3I	CTNAG	6 cut(s)	22, 48, 231, 1373, 1647, 1866
HpySE526I	ACGT	3 cut(s)	755, 1060, 1916
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	39, 364, 1506, 2182
LguI	GCTCTTC	1 cut(s)	1247
Lsp1109I	GCAGC	1 cut(s)	1111
LweI	GCATC	7 cut(s)	172, 210, 576, 1609, 1662, 1848, 1890
MaeI	CTAG	5 cut(s)	374, 681, 1748, 1890, 2016
MaeII	ACGT	3 cut(s)	755, 1060, 1916
MaeIII	GTNAC	5 cut(s)	1282, 1387, 1702, 1764, 2189
MalI	GATC	4 cut(s)	41, 366, 1508, 2184
MboI	GATC	4 cut(s)	39, 364, 1506, 2182
MflI	RGATCY	2 cut(s)	39, 364
MhlI	GDGCHC	4 cut(s)	14, 237, 399, 1584
MlyI	GAGTC	1 cut(s)	2231
MmeI	TCCRAC	4 cut(s)	392, 880, 1248, 1761
Mph1103I	ATGCAT	1 cut(s)	1624
MroXI	GAANNNNTTC	1 cut(s)	1452
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	1124
MspI	CCGG	2 cut(s)	58, 244
MspR9I	CCNGG	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	1749
MwoI	GCNNNNNNNGC	1 cut(s)	1672
NciI	CCSGG	1 cut(s)	58
NcoI	CCATGG	1 cut(s)	196
NdeI	CATATG	1 cut(s)	111
NdeII	GATC	4 cut(s)	39, 364, 1506, 2182
NlaIV	GGNNCC	4 cut(s)	366, 1272, 1582, 1583
NmuCI	GTSAC	2 cut(s)	1387, 2189
NsiI	ATGCAT	1 cut(s)	1624
NspI	RCATGY	3 cut(s)	354, 1855, 1885
PaeI	GCATGC	1 cut(s)	354
PagI	TCATGA	2 cut(s)	300, 1456
PceI	AGGCCT	2 cut(s)	142, 1476
PciSI	GCTCTTC	1 cut(s)	1247
PctI	GAATGC	1 cut(s)	1749
PdmI	GAANNNNTTC	1 cut(s)	1452
PfeI	GAWTC	4 cut(s)	247, 263, 650, 1203
PflMI	CCANNNNNTGG	1 cut(s)	1252
PkrI	GCNGC	2 cut(s)	406, 1126
Ple19I	CGATCG	1 cut(s)	1509
PleI	GAGTC	1 cut(s)	2230
PpsI	GAGTC	1 cut(s)	2230
Ppu21I	YACGTR	1 cut(s)	1917
PpuMI	RGGWCCY	1 cut(s)	1660
PshBI	ATTAAT	1 cut(s)	2037
PsiI	TTATAA	1 cut(s)	1178
Psp5II	RGGWCCY	1 cut(s)	1660
PspN4I	GGNNCC	4 cut(s)	366, 1272, 1582, 1583
PspOMI	GGGCCC	1 cut(s)	1580
PspPI	GGNCC	3 cut(s)	1580, 1581, 1660
PspPPI	RGGWCCY	1 cut(s)	1660
PsuI	RGATCY	2 cut(s)	39, 364
PvuI	CGATCG	1 cut(s)	1509
PvuII	CAGCTG	1 cut(s)	1124
RsaI	GTAC	5 cut(s)	685, 874, 1059, 1716, 1835
RsaNI	GTAC	5 cut(s)	684, 873, 1058, 1715, 1834
RseI	CAYNNNNRTG	1 cut(s)	392
SapI	GCTCTTC	1 cut(s)	1247
SatI	GCNGC	2 cut(s)	405, 1125
Sau3AI	GATC	4 cut(s)	39, 364, 1506, 2182
Sau96I	GGNCC	3 cut(s)	1580, 1581, 1660
ScaI	AGTACT	2 cut(s)	874, 1835
SchI	GAGTC	1 cut(s)	2231
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	4 cut(s)	14, 237, 399, 1584
SfaNI	GCATC	7 cut(s)	172, 210, 576, 1609, 1662, 1848, 1890
SfcI	CTRYAG	2 cut(s)	908, 1695
SinI	GGWCC	1 cut(s)	1660
SmiMI	CAYNNNNRTG	1 cut(s)	392
SphI	GCATGC	1 cut(s)	354
SseBI	AGGCCT	2 cut(s)	142, 1476
SsiI	CCGC	2 cut(s)	405, 1150
SspI	AATATT	2 cut(s)	769, 1792
SspMI	CTAG	5 cut(s)	374, 681, 1748, 1890, 2016
StuI	AGGCCT	2 cut(s)	142, 1476
StyD4I	CCNGG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	3 cut(s)	80, 1628, 1699
TaiI	ACGT	3 cut(s)	758, 1063, 1919
TaqI	TCGA	5 cut(s)	128, 552, 790, 1210, 1505
TaqII	GACCGA	1 cut(s)	184
TatI	WGTACW	4 cut(s)	683, 872, 1714, 1833
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	4 cut(s)	247, 263, 650, 1203
TscAI	CASTG	2 cut(s)	1302, 1407
TseFI	GTSAC	2 cut(s)	1387, 2189
TseI	GCWGC	1 cut(s)	1124
Tsp45I	GTSAC	2 cut(s)	1387, 2189
TspGWI	ACGGA	1 cut(s)	1966
TspRI	CASTG	2 cut(s)	1302, 1407
Van91I	CCANNNNNTGG	1 cut(s)	1252
VneI	GTGCAC	2 cut(s)	10, 395
VpaK11BI	GGWCC	1 cut(s)	1660
VspI	ATTAAT	1 cut(s)	2037
XapI	RAATTY	2 cut(s)	712, 961
XceI	RCATGY	3 cut(s)	354, 1855, 1885
XmnI	GAANNNNTTC	1 cut(s)	1452
XspI	CTAG	5 cut(s)	374, 681, 1748, 1890, 2016
ZrmI	AGTACT	2 cut(s)	874, 1835
Zsp2I	ATGCAT	1 cut(s)	1624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.