Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005286

Physical Location & Seq

Genomic Coordinates Forward (+)

53224634 .. 53224906

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0359800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGAACCACAAAACCGGCAACCAACCAAGGATGGAGGAAGTAACAAAGCAGCCGAGAGTAGTGCTAACATGCTTCGCAGGAAGAGCAGTACCAGGTGGATTCCCACTACAGATCAGATAAGAATCCTCAAGGATCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTACAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGGGCAAGAACGTCTTTTATTGGTTCACGAACCAAAGGGCTCAGGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0012505 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

90

Amino Acids

10.61

Weight (kDa)

10.14

Isoelectric Point (pI)

72.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 90	1.9e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05670 AT1G05670 AT1G05670
fragaria_vesca	FvH4_4g35550 FvH4_4g35550
malus_domestica	MD13G1082300.v1.1 MD16G1081400.v1.1
prunus_persica	Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1
pyrus_communis	pycom13g07090 pycom16g07020
rosa_chinensis	RchiOBHm_Chr4g0445191
rosa_laevigata	RLG00000005758
rosa_multiflora	Rmu_co8367507.1_g000001 Rmu_sc0000050.1_g000035
rosa_roxburghii	Rroxscaffold_5G00385710
rosa_rugosa	Rorug04G0359800 Rorug04G0359900
rosa_samantha	Rh4AG420700 Rh4BG432600 Rh4CG447200 Rh4DG428700
rosa_wichuraiana	Rw4G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	141, 194
AfaI	GTAC	2 cut(s)	91, 209
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	2 cut(s)	141, 194
ApeKI	GCWGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	197
BfmI	CTRYAG	2 cut(s)	108, 168
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	6, 161
BmrFI	CCNGG	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	4 cut(s)	112, 133, 186, 216
BspLI	GGNNCC	2 cut(s)	6, 161
BspPI	GGATC	2 cut(s)	141, 194
BspQI	GCTCTTC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	4 cut(s)	112, 133, 186, 216
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	4 cut(s)	115, 136, 189, 219
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	4 cut(s)	112, 133, 186, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	2 cut(s)	108, 168
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	133, 186
BstYI	RGATCY	2 cut(s)	133, 186
BtsCI	GGATG	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	159
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	90, 208
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	3 cut(s)	53, 199, 260
CviKI_1	RGCY	3 cut(s)	53, 199, 260
CviQI	GTAC	2 cut(s)	90, 208
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	4 cut(s)	114, 135, 188, 218
DpnII	GATC	4 cut(s)	112, 133, 186, 216
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	73
FaiI	YATR	1 cut(s)	71
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	179
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	1 cut(s)	73
HinfI	GANTC	3 cut(s)	100, 123, 178
HpaII	CCGG	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	2 cut(s)	117, 183
Hpy188III	TCNNGA	2 cut(s)	247, 263
Hpy8I	GTNNAC	1 cut(s)	246
HpyCH4IV	ACGT	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	112, 133, 186, 216
LguI	GCTCTTC	1 cut(s)	77
LpnPI	CCDG	6 cut(s)	29, 64, 79, 106, 209, 248
Lsp1109I	GCAGC	1 cut(s)	62
MabI	ACCWGGT	1 cut(s)	92
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	4 cut(s)	114, 135, 188, 218
MboI	GATC	4 cut(s)	112, 133, 186, 216
MboII	GAAGA	1 cut(s)	94
MflI	RGATCY	2 cut(s)	133, 186
MhlI	GDGCHC	1 cut(s)	262
MnlI	CCTC	4 cut(s)	29, 137, 177, 214
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	84
NdeII	GATC	4 cut(s)	112, 133, 186, 216
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	2 cut(s)	6, 161
NmeAIII	GCCGAG	1 cut(s)	79
NspI	RCATGY	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	100, 123, 178
PkrI	GCNGC	1 cut(s)	52
PpuMI	RGGWCCY	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	6, 161
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PsuI	RGATCY	2 cut(s)	133, 186
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	91, 209
RsaNI	GTAC	2 cut(s)	90, 208
SapI	GCTCTTC	1 cut(s)	77
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	4 cut(s)	112, 133, 186, 216
Sau96I	GGNCC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	4 cut(s)	98, 161, 201, 234
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	2 cut(s)	108, 168
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	27
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	219
TfiI	GAWTC	3 cut(s)	100, 123, 178
TseI	GCWGC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	159
XceI	RCATGY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.