Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8367507.1

Orthogroup ID

OG0005286

Physical Location & Seq

Genomic Coordinates Forward (+)

12 .. 1108

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8367507.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1097 bp

atgctctcatctggctcgacagatatgaggccttttcctgattattcccccaagagaccgaccatcaaggatgccgaacttgtccatggcatctccaccacaataaagttgcgcagctctgagcccttgcgccagattctgaagccttatgaatcaaagttcaggtctgaccatctaatttgggttctcatgaagattaagagtgagtataagctggttttggatttgtttgattgggcatgctttcgaagggatccaacactagaagctcgttgcattgttgtgcacattgccgcagcatcaaatgatcttaaaacagctcatgggcttatccatgacttttgggcaaaacctaaattagatgtcagtctttcatgcactcactttgctgaccggttgatatacacttacaaggactggggttcagacccccatgtgttcgatgttttcttcgaagtccttgttgaacttgggatgctcaaagaagcaagaaaacattttgagaagctgttgagatatgggttggttatctctgttgattcctgtaatttatttctttctcgtttatctagtacatctgatggaattgagacggcagtaaagtttttcaatgaatatcttgaagtgggtgttcattggaacacgtcgtcatataatattatcattcattctctctgtcgattagggaagataaaagaagcccaccatttactactgcaaatggagttgaagggttgtttgcctgatgttgtaagttatagtactttaatcagccgatattgttatgttggagaactacggaatgtgttgaagctcatagaagagatgaaaagtaaaggattgaagctaaattcctatacctataacagcatattacttcttctctgcaagactggaaaactatctgaagcagaaatgatattgagggaaatgatggttgtgggagtacgtcctgataatgtcatctacacaactctaattgatggtttctgtaagttagggaatgttccagctgcttggaggctgtttgatgaaatgcgggttaggaaagttatcccagattttataacttatactgctattattcatggattctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0012505 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

365

Amino Acids

41.97

Weight (kDa)

8.58

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05670 AT1G05670 AT1G05670
fragaria_vesca	FvH4_4g35550 FvH4_4g35550
malus_domestica	MD13G1082300.v1.1 MD16G1081400.v1.1
prunus_persica	Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1
pyrus_communis	pycom13g07090 pycom16g07020
rosa_chinensis	RchiOBHm_Chr4g0445191
rosa_laevigata	RLG00000005758
rosa_multiflora	Rmu_co8367507.1_g000001 Rmu_sc0000050.1_g000035
rosa_roxburghii	Rroxscaffold_5G00385710
rosa_rugosa	Rorug04G0359800 Rorug04G0359900
rosa_samantha	Rh4AG420700 Rh4BG432600 Rh4CG447200 Rh4DG428700
rosa_wichuraiana	Rw4G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1067
Acc16I	TGCGCA	1 cut(s)	113
AciI	CCGC	2 cut(s)	294, 1039
AclWI	GGATC	2 cut(s)	248, 261
AcsI	RAATTY	1 cut(s)	850
AcuI	CTGAAG	2 cut(s)	161, 927
AfaI	GTAC	3 cut(s)	574, 763, 948
AflIII	ACRYGT	1 cut(s)	642
AgeI	ACCGGT	1 cut(s)	393
AgsI	TTSAA	6 cut(s)	467, 610, 623, 730, 811, 844
AjiI	CACGTC	1 cut(s)	645
AluBI	AGCT	8 cut(s)	117, 214, 269, 320, 508, 814, 847, 1013
AluI	AGCT	8 cut(s)	117, 214, 269, 320, 508, 814, 847, 1013
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	49, 584
Alw44I	GTGCAC	1 cut(s)	284
AlwI	GGATC	2 cut(s)	248, 261
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	1 cut(s)	29
ApaLI	GTGCAC	1 cut(s)	284
ApeKI	GCWGC	3 cut(s)	114, 296, 1013
ApoI	RAATTY	1 cut(s)	850
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AsiGI	ACCGGT	1 cut(s)	393
AspLEI	GCGC	2 cut(s)	114, 132
AsuII	TTCGAA	2 cut(s)	247, 453
BaeGI	GKGCMC	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	126, 308, 1000
BccI	CCATC	5 cut(s)	71, 180, 575, 928, 977
BceAI	ACGGC	1 cut(s)	609
BcoDI	GTCTC	2 cut(s)	49, 584
BfaI	CTAG	2 cut(s)	263, 570
BisI	GCNGC	4 cut(s)	115, 294, 297, 1014
BlsI	GCNGC	4 cut(s)	116, 295, 298, 1015
BmcAI	AGTACT	1 cut(s)	763
BmgBI	CACGTC	1 cut(s)	645
BmiI	GGNNCC	1 cut(s)	255
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	4 cut(s)	61, 99, 308, 465
BmuI	ACTGGG	1 cut(s)	427
Bpu14I	TTCGAA	2 cut(s)	247, 453
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	393
Bse118I	RCCGGY	1 cut(s)	393
Bse1I	ACTGG	2 cut(s)	422, 898
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	76, 480
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	422, 898
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	3 cut(s)	126, 308, 1000
BshFI	GGCC	1 cut(s)	31
BshTI	ACCGGT	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	394
BsmAI	GTCTC	2 cut(s)	49, 584
BsmBI	CGTCTC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	31
Bso31I	GGTCTC	1 cut(s)	49
Bsp119I	TTCGAA	2 cut(s)	247, 453
Bsp1286I	GDGCHC	2 cut(s)	126, 288
Bsp143I	GATC	2 cut(s)	253, 307
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	2 cut(s)	294, 1039
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	2 cut(s)	248, 261
BspT104I	TTCGAA	2 cut(s)	247, 453
BspTNI	GGTCTC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	422, 898
BssAI	RCCGGY	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	2 cut(s)	253, 307
BssT1I	CCWWGG	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	816
BstBI	TTCGAA	2 cut(s)	247, 453
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	76, 480
BstHHI	GCGC	2 cut(s)	114, 132
BstKTI	GATC	2 cut(s)	256, 310
BstMAI	GTCTC	2 cut(s)	49, 584
BstMBI	GATC	2 cut(s)	253, 307
BstNSI	RCATGY	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	126, 308, 1000
BstX2I	RGATCY	1 cut(s)	253
BstXI	CCANNNNNNTGG	1 cut(s)	1017
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	85
BtrI	CACGTC	1 cut(s)	645
BtsCI	GGATG	2 cut(s)	76, 480
Cac8I	GCNNGC	1 cut(s)	241
CaiI	CAGNNNCTG	1 cut(s)	139
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	2 cut(s)	114, 132
Cfr10I	RCCGGY	1 cut(s)	393
Csp6I	GTAC	3 cut(s)	573, 762, 947
CspAI	ACCGGT	1 cut(s)	393
CviAII	CATG	8 cut(s)	86, 190, 240, 323, 335, 375, 434, 1088
CviQI	GTAC	3 cut(s)	573, 762, 947
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	2 cut(s)	255, 309
DpnII	GATC	2 cut(s)	253, 307
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
Eco130I	CCWWGG	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	49
Eco57I	CTGAAG	2 cut(s)	161, 927
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	584
FaeI	CATG	8 cut(s)	89, 193, 243, 326, 338, 378, 437, 1091
FatI	CATG	8 cut(s)	85, 189, 239, 322, 334, 374, 433, 1087
FauI	CCCGC	1 cut(s)	1032
Fnu4HI	GCNGC	4 cut(s)	115, 294, 297, 1014
FokI	GGATG	2 cut(s)	83, 487
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	4 cut(s)	115, 294, 297, 1014
FspBI	CTAG	2 cut(s)	263, 570
FspI	TGCGCA	1 cut(s)	113
GlaI	GCGC	2 cut(s)	113, 131
GluI	GCNGC	4 cut(s)	115, 294, 297, 1014
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	1 cut(s)	394
HhaI	GCGC	2 cut(s)	114, 132
Hin1II	CATG	8 cut(s)	89, 193, 243, 326, 338, 378, 437, 1091
Hin6I	GCGC	2 cut(s)	112, 130
HinP1I	GCGC	2 cut(s)	112, 130
HinfI	GANTC	4 cut(s)	136, 152, 539, 1092
HpaII	CCGG	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	6 cut(s)	121, 141, 169, 427, 580, 907
Hpy188III	TCNNGA	4 cut(s)	38, 190, 620, 953
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	649
HpyAV	CCTTC	2 cut(s)	243, 724
HpyCH4IV	ACGT	2 cut(s)	644, 949
HpyCH4V	TGCA	5 cut(s)	276, 286, 378, 718, 888
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	644, 949
Hsp92II	CATG	8 cut(s)	89, 193, 243, 326, 338, 378, 437, 1091
HspAI	GCGC	2 cut(s)	112, 130
Kzo9I	GATC	2 cut(s)	253, 307
Lsp1109I	GCAGC	3 cut(s)	126, 308, 1000
LweI	GCATC	4 cut(s)	61, 99, 308, 465
MaeI	CTAG	2 cut(s)	263, 570
MaeII	ACGT	2 cut(s)	644, 949
MalI	GATC	2 cut(s)	255, 309
MboI	GATC	2 cut(s)	253, 307
MboII	GAAGA	5 cut(s)	205, 442, 700, 833, 872
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	2 cut(s)	126, 288
MluCI	AATT	6 cut(s)	177, 356, 547, 585, 850, 978
MmeI	TCCRAC	2 cut(s)	281, 769
MnlI	CCTC	3 cut(s)	21, 918, 1014
MseI	TTAA	3 cut(s)	198, 312, 767
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	1013
MspI	CCGG	1 cut(s)	394
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	253, 307
NlaIII	CATG	8 cut(s)	89, 193, 243, 326, 338, 378, 437, 1091
NlaIV	GGNNCC	1 cut(s)	255
NsbI	TGCGCA	1 cut(s)	113
NspI	RCATGY	1 cut(s)	243
NspV	TTCGAA	2 cut(s)	247, 453
PaeI	GCATGC	1 cut(s)	243
PagI	TCATGA	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	4 cut(s)	136, 152, 539, 1092
PinAI	ACCGGT	1 cut(s)	393
PkrI	GCNGC	4 cut(s)	116, 295, 298, 1015
PsiI	TTATAA	1 cut(s)	1067
PspN4I	GGNNCC	1 cut(s)	255
PstNI	CAGNNNCTG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	1013
RsaI	GTAC	3 cut(s)	574, 763, 948
RsaNI	GTAC	3 cut(s)	573, 762, 947
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	198, 312, 767
SatI	GCNGC	4 cut(s)	115, 294, 297, 1014
Sau3AI	GATC	2 cut(s)	253, 307
ScaI	AGTACT	1 cut(s)	763
SduI	GDGCHC	2 cut(s)	126, 288
SfaNI	GCATC	4 cut(s)	61, 99, 308, 465
SfuI	TTCGAA	2 cut(s)	247, 453
SmiMI	CAYNNNNRTG	1 cut(s)	281
SphI	GCATGC	1 cut(s)	243
Sse9I	AATT	6 cut(s)	177, 356, 547, 585, 850, 978
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	294, 1039
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	2 cut(s)	263, 570
StuI	AGGCCT	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	85
TaiI	ACGT	2 cut(s)	647, 952
TaqI	TCGA	5 cut(s)	17, 247, 441, 453, 679
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	6 cut(s)	177, 356, 547, 585, 850, 978
TatI	WGTACW	2 cut(s)	572, 761
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	4 cut(s)	136, 152, 539, 1092
Tru1I	TTAA	3 cut(s)	198, 312, 767
Tru9I	TTAA	3 cut(s)	198, 312, 767
TseI	GCWGC	3 cut(s)	114, 296, 1013
TspDTI	ATGAA	9 cut(s)	165, 206, 363, 623, 627, 656, 842, 1047, 1076
TspGWI	ACGGA	1 cut(s)	814
VneI	GTGCAC	1 cut(s)	284
XapI	RAATTY	1 cut(s)	850
XceI	RCATGY	1 cut(s)	243
XspI	CTAG	2 cut(s)	263, 570
ZrmI	AGTACT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.