Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005286

Physical Location & Seq

Genomic Coordinates Forward (+)

53239693 .. 53243405

Gene Structure 3713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0359900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGAAATGGAGGAAGGTTTCACTTTGCTATATTCCATAGGTTTCTTCGTAACACTGTGTACTCTACAACGTTGCCGTATGTCTTGGTAGACTTGCTTGCATCAAAGTATTTCAAGTATATTGATGTCCGAAACAAGATTAAAGAGTGGCCAGGTGCAATTTTAAGCTCGCTTCGTAATCTTTTGTGTTTGAAGCTGGACAATAATCCACTAAGACAGATACCATCAGATGATGGATTCCAAGCAACCCCTATGCTTCAGATTCTGGATCTAAGTGGTAATGCAGCTTCGTCACTAGAGCACCCTATATTTTCTAGCTTACAGTATCTGCAAGAGCTTTATCTGAGACGAATGCAGCTACACGAAGTCCCATCAGATATCTTGAGTTTGCAGCAACTGCGGATCCTAGACTTCAGCCAAAATTCCTTGCAGTCGGTTCCAGTGGAGTTCAAAATTTTTACTTCACTCACTGAGCTAGGCCTATCTGACAACAACATATCAACACTTCCTCCAAAATTGCAATGTGAATATTCAAATGTTAAAGCTACTGAACTGATTCTCCCACAGTTTCCTTCCCTTGGCTTGTTAATTAACATTACATCAGTGGTGGCAGAAGTAGAAGAAAGAAGAGAGGAGCAGGCATATTACATCAGTGGTGGCAGAAGTAGAAGAAAGAAAAGAGGGGCAGCAGGAGCAAGCATTAGTAGTGGGCGAAGCAGCACCGCAGCTGCTGCACAGCTGCGCATAGCATCTGCCGAGCCATCTGTCGAGTCATCTGTCGAACAGCGGCTCGGTCTACAACGGTGGCTCTCCATATCCCACAACGGTTTCCATCTGTCGTCTGATAATGTTTTTGGCATAGTGTATGTTTCAACGTTGAAGAGCATCTTCATCAACTCTGCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0012505 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

302

Amino Acids

33.72

Weight (kDa)

9.02

Isoelectric Point (pI)

57.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	85 - 162	8.4e-07	Leucine-rich repeat region
LRR_8	PF13855	109 - 166	1.8e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05670 AT1G05670 AT1G05670
fragaria_vesca	FvH4_4g35550 FvH4_4g35550
malus_domestica	MD13G1082300.v1.1 MD16G1081400.v1.1
prunus_persica	Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1
pyrus_communis	pycom13g07090 pycom16g07020
rosa_chinensis	RchiOBHm_Chr4g0445191
rosa_laevigata	RLG00000005758
rosa_multiflora	Rmu_co8367507.1_g000001 Rmu_sc0000050.1_g000035
rosa_roxburghii	Rroxscaffold_5G00385710
rosa_rugosa	Rorug04G0359800 Rorug04G0359900
rosa_samantha	Rh4AG420700 Rh4BG432600 Rh4CG447200 Rh4DG428700
rosa_wichuraiana	Rw4G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	743
AccI	GTMKAC	2 cut(s)	90, 796
AciI	CCGC	3 cut(s)	400, 723, 787
AclI	AACGTT	2 cut(s)	71, 875
AclWI	GGATC	3 cut(s)	276, 397, 410
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	2 cut(s)	421, 453
AcuI	CTGAAG	2 cut(s)	242, 397
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	578
AgsI	TTSAA	6 cut(s)	115, 193, 451, 534, 873, 880
AjnI	CCWGG	1 cut(s)	151
AloI	GAACNNNNNNTCC	2 cut(s)	543, 575
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	3 cut(s)	276, 397, 410
AlwNI	CAGNNNCTG	4 cut(s)	265, 328, 397, 731
AoxI	GGCC	2 cut(s)	149, 478
ApeKI	GCWGC	9 cut(s)	284, 355, 391, 686, 717, 725, 728, 731, 739
ApoI	RAATTY	2 cut(s)	421, 453
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	744
BalI	TGGCCA	1 cut(s)	151
BamHI	GGATCC	1 cut(s)	402
BarI	GAAGNNNNNNTAC	2 cut(s)	271, 303
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	9 cut(s)	296, 367, 403, 698, 715, 718, 726, 729, 737
BccI	CCATC	5 cut(s)	227, 232, 379, 769, 840
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	4 cut(s)	296, 315, 407, 476
Bme1390I	CCNGG	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	404, 438
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	3 cut(s)	110, 758, 894
BpuEI	CTTGAG	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	577
BsaXI	ACNNNNNCTCC	4 cut(s)	493, 523, 543, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	1 cut(s)	440
Bse3DI	GCAATG	1 cut(s)	527
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	577
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	1 cut(s)	527
BseMII	CTCAG	2 cut(s)	335, 462
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	1 cut(s)	647
BseXI	GCAGC	9 cut(s)	296, 367, 403, 698, 715, 718, 726, 729, 737
BsgI	GTGCAG	1 cut(s)	717
BshFI	GGCC	2 cut(s)	151, 480
BsiHKAI	GWGCWC	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	1 cut(s)	340
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	151, 480
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	268, 402
BspACI	CCGC	3 cut(s)	400, 723, 787
BspANI	GGCC	2 cut(s)	151, 480
BspCNI	CTCAG	2 cut(s)	336, 463
BspLI	GGNNCC	2 cut(s)	404, 438
BspPI	GGATC	3 cut(s)	276, 397, 410
BspQI	GCTCTTC	1 cut(s)	875
BsrDI	GCAATG	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	2 cut(s)	268, 402
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	5 cut(s)	58, 324, 567, 804, 827
Bst6I	CTCTTC	2 cut(s)	622, 875
BstAPI	GCANNNNNTGC	2 cut(s)	397, 731
BstC8I	GCNNGC	4 cut(s)	99, 170, 639, 697
BstDEI	CTNAG	4 cut(s)	212, 272, 344, 471
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	2 cut(s)	271, 405
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	2 cut(s)	268, 402
BstMWI	GCNNNNNNNGC	3 cut(s)	397, 692, 731
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	9 cut(s)	296, 367, 403, 698, 715, 718, 726, 729, 737
BstX2I	RGATCY	2 cut(s)	268, 402
BstYI	RGATCY	2 cut(s)	268, 402
BsuRI	GGCC	2 cut(s)	151, 480
BtsIMutI	CAGTG	5 cut(s)	54, 447, 468, 609, 658
Cac8I	GCNNGC	4 cut(s)	99, 170, 639, 697
CaiI	CAGNNNCTG	4 cut(s)	265, 328, 397, 731
CfoI	GCGC	1 cut(s)	744
Csp6I	GTAC	1 cut(s)	61
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	4 cut(s)	212, 272, 344, 471
DpnI	GATC	2 cut(s)	270, 404
DpnII	GATC	2 cut(s)	268, 402
EaeI	YGGCCR	1 cut(s)	149
Eam1104I	CTCTTC	2 cut(s)	622, 875
EarI	CTCTTC	2 cut(s)	622, 875
Eco130I	CCWWGG	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	480
Eco32I	GATATC	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	242, 397
EcoRII	CCWGG	1 cut(s)	151
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	577
Esp3I	CGTCTC	1 cut(s)	340
FalI	AAGNNNNNCTT	2 cut(s)	872, 904
FaqI	GGGAC	1 cut(s)	353
FblI	GTMKAC	2 cut(s)	90, 796
FspBI	CTAG	4 cut(s)	296, 315, 407, 476
FspI	TGCGCA	1 cut(s)	743
GlaI	GCGC	1 cut(s)	743
HaeIII	GGCC	2 cut(s)	151, 480
HhaI	GCGC	1 cut(s)	744
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HinfI	GANTC	4 cut(s)	237, 262, 556, 770
Hpy166II	GTNNAC	3 cut(s)	61, 91, 797
Hpy188I	TCNGA	7 cut(s)	131, 229, 261, 345, 376, 487, 844
Hpy188III	TCNNGA	2 cut(s)	266, 382
Hpy8I	GTNNAC	3 cut(s)	61, 91, 797
HpyAV	CCTTC	2 cut(s)	9, 582
HpyCH4III	ACNGT	5 cut(s)	58, 324, 567, 804, 827
HpyCH4IV	ACGT	2 cut(s)	71, 875
HpyCH4V	TGCA	9 cut(s)	101, 158, 284, 331, 355, 391, 430, 520, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	397, 692, 731
HpyF3I	CTNAG	4 cut(s)	212, 272, 344, 471
HpySE526I	ACGT	2 cut(s)	71, 875
HspAI	GCGC	1 cut(s)	742
Kzo9I	GATC	2 cut(s)	268, 402
LguI	GCTCTTC	1 cut(s)	875
LmnI	GCTCC	2 cut(s)	634, 692
LpnPI	CCDG	7 cut(s)	138, 165, 182, 251, 453, 623, 675
Lsp1109I	GCAGC	9 cut(s)	296, 367, 403, 698, 715, 718, 726, 729, 737
LweI	GCATC	3 cut(s)	110, 758, 894
MaeI	CTAG	4 cut(s)	296, 315, 407, 476
MaeII	ACGT	2 cut(s)	71, 875
MaeIII	GTNAC	2 cut(s)	50, 291
MalI	GATC	2 cut(s)	270, 404
MboI	GATC	2 cut(s)	268, 402
MboII	GAAGA	6 cut(s)	38, 632, 639, 681, 880, 892
MflI	RGATCY	2 cut(s)	268, 402
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	151
MluCI	AATT	5 cut(s)	159, 421, 453, 515, 588
MluNI	TGGCCA	1 cut(s)	151
MlyI	GAGTC	1 cut(s)	779
MnlI	CCTC	4 cut(s)	5, 519, 625, 674
Mox20I	TGGCCA	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	555
MscI	TGGCCA	1 cut(s)	151
MseI	TTAA	5 cut(s)	141, 164, 540, 587, 591
Msp20I	TGGCCA	1 cut(s)	151
MspA1I	CMGCKG	3 cut(s)	728, 739, 787
MspR9I	CCNGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	397, 692, 731
NdeII	GATC	2 cut(s)	268, 402
NlaIV	GGNNCC	2 cut(s)	404, 438
NmeAIII	GCCGAG	1 cut(s)	781
NmuCI	GTSAC	1 cut(s)	291
NsbI	TGCGCA	1 cut(s)	743
PacI	TTAATTAA	1 cut(s)	591
PceI	AGGCCT	1 cut(s)	480
PciSI	GCTCTTC	1 cut(s)	875
PctI	GAATGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	3 cut(s)	237, 262, 556
PleI	GAGTC	1 cut(s)	778
PpsI	GAGTC	1 cut(s)	778
Psp1406I	AACGTT	2 cut(s)	71, 875
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	404, 438
PstNI	CAGNNNCTG	4 cut(s)	265, 328, 397, 731
PsuI	RGATCY	2 cut(s)	268, 402
PvuII	CAGCTG	2 cut(s)	728, 739
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SapI	GCTCTTC	1 cut(s)	875
SaqAI	TTAA	5 cut(s)	141, 164, 540, 587, 591
Sau3AI	GATC	2 cut(s)	268, 402
SchI	GAGTC	1 cut(s)	779
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	303
SfaNI	GCATC	3 cut(s)	110, 758, 894
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	5 cut(s)	159, 421, 453, 515, 588
SseBI	AGGCCT	1 cut(s)	480
SsiI	CCGC	3 cut(s)	400, 723, 787
SspI	AATATT	1 cut(s)	530
SspMI	CTAG	4 cut(s)	296, 315, 407, 476
StuI	AGGCCT	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	5 cut(s)	58, 324, 567, 804, 827
TaiI	ACGT	2 cut(s)	74, 878
TaqI	TCGA	2 cut(s)	768, 780
TaqII	GACCGA	1 cut(s)	782
TasI	AATT	5 cut(s)	159, 421, 453, 515, 588
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	790
TfiI	GAWTC	3 cut(s)	237, 262, 556
Tru1I	TTAA	5 cut(s)	141, 164, 540, 587, 591
Tru9I	TTAA	5 cut(s)	141, 164, 540, 587, 591
TscAI	CASTG	5 cut(s)	61, 447, 475, 609, 658
TseFI	GTSAC	1 cut(s)	291
TseI	GCWGC	9 cut(s)	284, 355, 391, 686, 717, 725, 728, 731, 739
Tsp45I	GTSAC	1 cut(s)	291
TspDTI	ATGAA	1 cut(s)	880
TspRI	CASTG	5 cut(s)	61, 447, 475, 609, 658
XapI	RAATTY	2 cut(s)	421, 453
XmiI	GTMKAC	2 cut(s)	90, 796
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	4 cut(s)	296, 315, 407, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.