Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005286

Physical Location & Seq

Genomic Coordinates Reverse (-)

4698348 .. 4700585

Gene Structure 2238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2238 bp

ATGAAGAGGTGCGCCATTTTGTCAGTCTATTGTTTTCAGATCTCCTGTCATCGTCCCCGCTTAAATATTGCTGTAAATTCTTCTCTATTCGTCTTTAGGAGGTTTTTAAGTCATGGAATTTCTTTAGGATCAAAAGATACAAGGCCTTTTCCTGACTATTCACCCAAGAAACCTACCATCAAAGATGCCGAACTTGTACATCGCATCTCCACCACAATTAAGCTTCGCTGCTCTGAGCCTTTTCGCAGTATTCTGAAGCCTTATGAATCTAATTTCAGGTCTGACCATCTTATTTGGGTTCTCATGAATATTAAGAATGACTATAAACTAGTTCTGGATTTCTTTGACTGGGCATGCTTACGAAAGGACCCATCATTAGAAGCCTGTTGCGTCGTTGTACAAATTGCTGCAGCATCAAAGGATCTTAAAACAGCGCATGAGCTCATTCATAATTTTTGGGCAAAACCCAAGTTAGATGTCGGTCTTTCATTCGCTCACTTTTCTGATCGGTTGACATACACTTACAAGGATTGGGGTTCAGATACCCATGTGTTTGATGTTTTCTTCCGGGTCCTTGTTGAAACTGAGATGCTCAATGAAGCAAGAAAGCTTTTTGAGAAATTGTTGAGCTATGGGTTGGTTATCTCTGTTGATTCCTGTAATTTATTTCTTACTCGGCTATCAAGCACCTTTGATGGGATTGAGATGGCAATAAAATTCTTCATCGAATACCCTGAAGTGGGTATTCATTGGAACACCACATCATACAATATTATCATTCATTGTCTTTGTCGATTAGGGAAAATAAAAGAGGCCCACCATTTACTCCTGCAAATGGAGTTGAGGGGCTGTGTACCTGATGTTGTAAGTTATAGTACTTTAATCAGCAGATATTGTTATGTTGGAGAACTGCAGAAGGTTTTGAAGCTCATAGAGGAAATGAAAATAAAAGGATTGAAGCAAAATTCCCATACATATAACGGCATAATACTCTTTCTGTGTAAAACAGGTAAACTATCTGAAGCAGAAGGGTTACTGAGGGAGATGATGGTTCTGGGAGTACTTCCTGATAATGTCGTCTACACTACTCTAATTGATGGATTCTGTAAGTTGGGTAATATTCCTGCTGCATATAGGCTATTTGACGAAATGCGGGATAGGAAAATAATCCCTGATTATATTACATATACTGCTATTATTCATGGATTTTGTCAAAAAGGGAAGATGACAGAAGCAGATAAGCTCTTCCATGAAATGGTTAGCAGAGGATTAGAACCAGATGAAGTTACTTATACAGCCCTTATTGATGGTTATTGCAAAACAGGCGAGATGAAAGAGGCATTTTCGCTTCACAACCAGATGGTTAATATGGGGCTTACCCCAAATGTTGTCACTTATACGGCATTGGCTGATGGCCTTTGTAAAAGAGGGGAGGTAGATGTAGCAAATGAACTTCTTCATGACGTGTGCAGGAAGGGCCTTCAACTTAATGTCTTCACTTACAACTCAATTGTTAACGGCCTTTGTAAGTCGGGAAACATAGTGGAGGCAGAAAAATTGGTGGAACAAATGGAGGGTGCAGGGCCCTGTCCTGACACTATTACTTGTACCACTCTGATGGATGCATATTGTAAGATGAGGGACATGGCTAAGGCTCAGAAGGTCCTGCGTGAGATGCTCGATAGAGGGCTTCAACCTACAGTTGTTACATTCAATGTGCTTATGAATGGATTTTGTATGTCAGGAATGGTGGAAGATGCTGAGAGGCTACTTAAGTGTATGTTGGAGAAGGGTATAGTGCCTAATGCGGCAACCTACAATTCTCTCATGAAGCAGTACTGCATTAGAAATAATATGCGTACTACAGCGGAAATTTATAGGAGCATGTGTGCTGGTGGGGTGATTCCTGATAGCAACACCTATAACATTTTGATAAAAGGGCATTTTAAGGCAAGGAATATGAAAGAGGCTTGGTTTTTGCATAAAGAAATGGCAGGAAAGGGATTTATTCCGACGGCAAGTTGTTACAGTGCACTTATTAAGGGTTTTTTCAAGAGAAGGAAATTTGCGGAGGCAAGGGAACTATTTGAAGAAATGAGGAGACATGGTGCGGTTGCAGATAGAGAAACATACAACGTTTTTGTCGATATGAACTATGAAGAAGGGAACATGGACATTACTCTAGATCTTTGCGACGAAATTATAGAGAATTGTCTTGTTGGCAAAGCCCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0012505 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

746

Amino Acids

84.98

Weight (kDa)

7.84

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	248 - 280	1.2e-06	PPR repeat
PPR_2	PF13041	252 - 299	3.4e-14	PPR repeat family
PPR	PF01535	255 - 284	4.5e-06	PPR repeat
PPR_3	PF13812	275 - 330	1.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	282 - 315	5e-08	PPR repeat
PPR_2	PF13041	286 - 330	1.4e-11	PPR repeat family
PPR_long	PF17177	304 - 435	4.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	317 - 349	5.3e-06	PPR repeat
PPR_2	PF13041	322 - 370	1.8e-12	PPR repeat family
PPR_3	PF13812	345 - 401	2.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	353 - 385	1.3e-11	PPR repeat
PPR_2	PF13041	356 - 405	8e-17	PPR repeat family
PPR	PF01535	359 - 388	9.5e-08	PPR repeat
PPR_1	PF12854	389 - 420	1.7e-09	PPR repeat
PPR_2	PF13041	391 - 440	9.5e-21	PPR repeat family
PPR	PF01535	394 - 424	3.4e-09	PPR repeat
PPR_long	PF17177	411 - 484	2.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	414 - 469	5.4e-11	Pentatricopeptide repeat domain
TPR_24	PF23276	416 - 519	5.2e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	422 - 455	5.1e-13	PPR repeat
PPR_2	PF13041	426 - 475	8.6e-20	PPR repeat family
PPR	PF01535	429 - 459	1.6e-09	PPR repeat
PPR_1	PF12854	457 - 487	4.1e-09	PPR repeat
PPR_2	PF13041	471 - 510	2.2e-09	PPR repeat family
PPR_long	PF17177	475 - 611	1.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	492 - 525	5.4e-13	PPR repeat
PPR_2	PF13041	497 - 535	3.8e-08	PPR repeat family
PPR	PF01535	499 - 528	5.8e-07	PPR repeat
PPR_3	PF13812	519 - 577	1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	528 - 559	8.3e-07	PPR repeat
PPR_2	PF13041	531 - 579	6.7e-17	PPR repeat family
PPR	PF01535	534 - 564	1.6e-06	PPR repeat
TPR_24	PF23276	552 - 663	6.4e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	562 - 594	8.8e-11	PPR repeat
PPR_2	PF13041	566 - 614	3.3e-15	PPR repeat family
PPR	PF01535	569 - 599	3.3e-08	PPR repeat
PPR_2	PF13041	601 - 649	8.3e-12	PPR repeat family
PPR_2	PF13041	636 - 685	6.7e-12	PPR repeat family
PPR_1	PF12854	667 - 700	4.5e-06	PPR repeat
PPR_2	PF13041	671 - 716	4.7e-09	PPR repeat family
PPR	PF01535	675 - 703	3.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05670 AT1G05670 AT1G05670
fragaria_vesca	FvH4_4g35550 FvH4_4g35550
malus_domestica	MD13G1082300.v1.1 MD16G1081400.v1.1
prunus_persica	Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1
pyrus_communis	pycom13g07090 pycom16g07020
rosa_chinensis	RchiOBHm_Chr4g0445191
rosa_laevigata	RLG00000005758
rosa_multiflora	Rmu_co8367507.1_g000001 Rmu_sc0000050.1_g000035
rosa_roxburghii	Rroxscaffold_5G00385710
rosa_rugosa	Rorug04G0359800 Rorug04G0359900
rosa_samantha	Rh4AG420700 Rh4BG432600 Rh4CG447200 Rh4DG428700
rosa_wichuraiana	Rw4G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1255
AccI	GTMKAC	1 cut(s)	1080
AciI	CCGC	6 cut(s)	58, 1153, 1808, 1868, 2069, 2111
AclI	AACGTT	1 cut(s)	2136
AclWI	GGATC	2 cut(s)	136, 429
AcsI	RAATTY	6 cut(s)	76, 117, 716, 964, 1872, 2063
AcuI	CTGAAG	3 cut(s)	275, 756, 1041
AfaI	GTAC	8 cut(s)	198, 399, 855, 877, 1062, 1609, 1838, 1861
AfiI	CCNNNNNNNGG	5 cut(s)	696, 739, 740, 835, 1255
AflII	CTTAAG	1 cut(s)	1772
AflIII	ACRYGT	1 cut(s)	1464
AgsI	TTSAA	8 cut(s)	581, 925, 958, 1484, 1694, 1714, 2053, 2090
AhlI	ACTAGT	1 cut(s)	328
AjiI	CACGTC	1 cut(s)	1465
AluBI	AGCT	6 cut(s)	223, 442, 610, 630, 928, 1243
AluI	AGCT	6 cut(s)	223, 442, 610, 630, 928, 1243
Alw21I	GWGCWC	2 cut(s)	444, 2035
Alw26I	GTCTC	1 cut(s)	2095
Alw44I	GTGCAC	1 cut(s)	2031
AlwI	GGATC	2 cut(s)	136, 429
AoxI	GGCC	6 cut(s)	143, 813, 1414, 1477, 1519, 1583
ApaI	GGGCCC	1 cut(s)	1587
ApaLI	GTGCAC	1 cut(s)	2031
ApeKI	GCWGC	4 cut(s)	228, 407, 410, 1127
ApoI	RAATTY	6 cut(s)	76, 117, 716, 964, 1872, 2063
Asp700I	GAANNNNTTC	1 cut(s)	1455
AspLEI	GCGC	2 cut(s)	14, 436
AspS9I	GGNCC	7 cut(s)	367, 571, 814, 1477, 1583, 1584, 1663
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	2 cut(s)	153, 1912
AvaII	GGWCC	3 cut(s)	367, 571, 1663
BaeGI	GKGCMC	2 cut(s)	1587, 2035
BaeI	ACNNNNGTAYC	2 cut(s)	534, 567
BanII	GRGCYC	2 cut(s)	444, 1587
BbsI	GAAGAC	1 cut(s)	1486
Bbv12I	GWGCWC	2 cut(s)	444, 2035
BbvI	GCAGC	4 cut(s)	215, 394, 422, 1114
BceAI	ACGGC	4 cut(s)	997, 1416, 1534, 2031
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	1 cut(s)	2095
BcuI	ACTAGT	1 cut(s)	328
BfaI	CTAG	2 cut(s)	329, 2183
BfmI	CTRYAG	4 cut(s)	408, 911, 1698, 1863
BfrI	CTTAAG	1 cut(s)	1772
BglII	AGATCT	2 cut(s)	39, 2185
BisI	GCNGC	5 cut(s)	229, 408, 411, 1128, 1809
BlsI	GCNGC	5 cut(s)	230, 409, 412, 1129, 1810
BmcAI	AGTACT	3 cut(s)	877, 1062, 1838
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	3 cut(s)	367, 571, 1663
BmgBI	CACGTC	1 cut(s)	1465
BmgT120I	GGNCC	7 cut(s)	367, 571, 814, 1477, 1583, 1584, 1663
BmiI	GGNNCC	3 cut(s)	369, 572, 1585
BmrFI	CCNGG	1 cut(s)	569
BmrI	ACTGGG	1 cut(s)	358
BmsI	GCATC	7 cut(s)	175, 213, 422, 579, 1612, 1665, 1747
BmuI	ACTGGG	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	1486
Bpu10I	CCTNAGC	1 cut(s)	1650
BpuMI	CCSGG	1 cut(s)	569
BsaXI	ACNNNNNCTCC	4 cut(s)	1873, 1903, 2092, 2122
Bsc4I	CCNNNNNNNGG	5 cut(s)	696, 739, 740, 835, 1255
Bse1I	ACTGG	1 cut(s)	353
BseGI	GGATG	1 cut(s)	1627
BseLI	CCNNNNNNNGG	5 cut(s)	696, 739, 740, 835, 1255
BseMII	CTCAG	5 cut(s)	225, 576, 1028, 1670, 1752
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	2113
BseSI	GKGCMC	2 cut(s)	1587, 2035
BseXI	GCAGC	4 cut(s)	215, 394, 422, 1114
BsgI	GTGCAG	2 cut(s)	1489, 1599
BshFI	GGCC	6 cut(s)	145, 815, 1416, 1479, 1521, 1585
BsiHKAI	GWGCWC	2 cut(s)	444, 2035
BsiSI	CCGG	1 cut(s)	568
BslFI	GGGAC	2 cut(s)	39, 1655
BslI	CCNNNNNNNGG	5 cut(s)	696, 739, 740, 835, 1255
BsmAI	GTCTC	1 cut(s)	2095
BsmFI	GGGAC	2 cut(s)	39, 1655
BsnI	GGCC	6 cut(s)	145, 815, 1416, 1479, 1521, 1585
Bsp120I	GGGCCC	1 cut(s)	1583
Bsp1286I	GDGCHC	3 cut(s)	444, 1587, 2035
Bsp1407I	TGTACA	2 cut(s)	196, 397
Bsp143I	GATC	5 cut(s)	39, 128, 421, 505, 2185
BspACI	CCGC	6 cut(s)	58, 1153, 1808, 1868, 2069, 2111
BspANI	GGCC	6 cut(s)	145, 815, 1416, 1479, 1521, 1585
BspCNI	CTCAG	5 cut(s)	226, 577, 1029, 1669, 1753
BspHI	TCATGA	3 cut(s)	303, 1459, 1827
BspLI	GGNNCC	3 cut(s)	369, 572, 1585
BspMAI	CTGCAG	2 cut(s)	412, 915
BspPI	GGATC	2 cut(s)	136, 429
BspQI	GCTCTTC	1 cut(s)	1250
BspTI	CTTAAG	1 cut(s)	1772
BsrGI	TGTACA	2 cut(s)	196, 397
BsrI	ACTGG	1 cut(s)	353
BssMI	GATC	5 cut(s)	39, 128, 421, 505, 2185
Bst4CI	ACNGT	2 cut(s)	1702, 2030
Bst6I	CTCTTC	1 cut(s)	1250
BstAFI	CTTAAG	1 cut(s)	1772
BstAUI	TGTACA	2 cut(s)	196, 397
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	6 cut(s)	234, 585, 1037, 1650, 1656, 1761
BstF5I	GGATG	1 cut(s)	1627
BstHHI	GCGC	2 cut(s)	14, 436
BstKTI	GATC	5 cut(s)	42, 131, 424, 508, 2188
BstMAI	GTCTC	1 cut(s)	2095
BstMBI	GATC	5 cut(s)	39, 128, 421, 505, 2185
BstMWI	GCNNNNNNNGC	3 cut(s)	1323, 1476, 1675
BstNSI	RCATGY	2 cut(s)	357, 1888
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	4 cut(s)	408, 911, 1698, 1863
BstSLI	GKGCMC	2 cut(s)	1587, 2035
BstV1I	GCAGC	4 cut(s)	215, 394, 422, 1114
BstV2I	GAAGAC	1 cut(s)	1486
BstX2I	RGATCY	3 cut(s)	39, 421, 2185
BstXI	CCANNNNNNTGG	1 cut(s)	1618
BstYI	RGATCY	3 cut(s)	39, 421, 2185
BsuRI	GGCC	6 cut(s)	145, 815, 1416, 1479, 1521, 1585
BtgZI	GCGATG	1 cut(s)	185
BtrI	CACGTC	1 cut(s)	1465
BtsCI	GGATG	1 cut(s)	1627
BtsIMutI	CAGTG	1 cut(s)	2035
Cac8I	GCNNGC	1 cut(s)	355
CciI	TCATGA	3 cut(s)	303, 1459, 1827
CfoI	GCGC	2 cut(s)	14, 436
Cfr13I	GGNCC	7 cut(s)	367, 571, 814, 1477, 1583, 1584, 1663
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	8 cut(s)	197, 398, 854, 876, 1061, 1608, 1837, 1860
CviQI	GTAC	8 cut(s)	197, 398, 854, 876, 1061, 1608, 1837, 1860
DdeI	CTNAG	6 cut(s)	234, 585, 1037, 1650, 1656, 1761
DpnI	GATC	5 cut(s)	41, 130, 423, 507, 2187
DpnII	GATC	5 cut(s)	39, 128, 421, 505, 2185
Eam1104I	CTCTTC	1 cut(s)	1250
EarI	CTCTTC	1 cut(s)	1250
Ecl136II	GAGCTC	1 cut(s)	442
Eco147I	AGGCCT	1 cut(s)	145
Eco24I	GRGCYC	2 cut(s)	444, 1587
Eco47I	GGWCC	3 cut(s)	367, 571, 1663
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	3 cut(s)	275, 756, 1041
EcoICRI	GAGCTC	1 cut(s)	442
EcoO109I	RGGNCCY	6 cut(s)	367, 571, 1477, 1583, 1584, 1663
EcoT22I	ATGCAT	1 cut(s)	1627
EcoT38I	GRGCYC	2 cut(s)	444, 1587
FaqI	GGGAC	2 cut(s)	39, 1655
FauI	CCCGC	2 cut(s)	65, 1146
FblI	GTMKAC	1 cut(s)	1080
Fnu4HI	GCNGC	5 cut(s)	229, 408, 411, 1128, 1809
FokI	GGATG	1 cut(s)	1634
FriOI	GRGCYC	2 cut(s)	444, 1587
Fsp4HI	GCNGC	5 cut(s)	229, 408, 411, 1128, 1809
FspBI	CTAG	2 cut(s)	329, 2183
GlaI	GCGC	2 cut(s)	13, 435
GluI	GCNGC	5 cut(s)	229, 408, 411, 1128, 1809
HaeIII	GGCC	6 cut(s)	145, 815, 1416, 1479, 1521, 1585
HapII	CCGG	1 cut(s)	568
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	2 cut(s)	14, 436
Hin6I	GCGC	2 cut(s)	12, 434
HinP1I	GCGC	2 cut(s)	12, 434
HincII	GTYRAC	2 cut(s)	513, 1516
HindII	GTYRAC	2 cut(s)	513, 1516
HindIII	AAGCTT	2 cut(s)	221, 608
HinfI	GANTC	4 cut(s)	266, 653, 1101, 1903
HpaI	GTTAAC	1 cut(s)	1516
HpaII	CCGG	1 cut(s)	568
HphI	GGTGA	2 cut(s)	153, 1912
Hpy166II	GTNNAC	6 cut(s)	513, 854, 1013, 1081, 1516, 2033
Hpy8I	GTNNAC	6 cut(s)	513, 854, 1013, 1081, 1516, 2033
Hpy99I	CGWCG	3 cut(s)	395, 2017, 2198
HpyAV	CCTTC	8 cut(s)	910, 1022, 1468, 1490, 1654, 1783, 2052, 2156
HpyCH4III	ACNGT	2 cut(s)	1702, 2030
HpyCH4IV	ACGT	2 cut(s)	1464, 2136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1323, 1476, 1675
HpyF3I	CTNAG	6 cut(s)	234, 585, 1037, 1650, 1656, 1761
HpySE526I	ACGT	2 cut(s)	1464, 2136
HspAI	GCGC	2 cut(s)	12, 434
KspAI	GTTAAC	1 cut(s)	1516
Kzo9I	GATC	5 cut(s)	39, 128, 421, 505, 2185
LguI	GCTCTTC	1 cut(s)	1250
LmnI	GCTCC	1 cut(s)	1881
Lsp1109I	GCAGC	4 cut(s)	215, 394, 422, 1114
LweI	GCATC	7 cut(s)	175, 213, 422, 579, 1612, 1665, 1747
MaeI	CTAG	2 cut(s)	329, 2183
MaeII	ACGT	2 cut(s)	1464, 2136
MaeIII	GTNAC	5 cut(s)	1032, 1285, 1390, 1705, 2024
MalI	GATC	5 cut(s)	41, 130, 423, 507, 2187
MboI	GATC	5 cut(s)	39, 128, 421, 505, 2185
MfeI	CAATTG	1 cut(s)	1509
MflI	RGATCY	3 cut(s)	39, 421, 2185
MhlI	GDGCHC	3 cut(s)	444, 1587, 2035
MmeI	TCCRAC	3 cut(s)	883, 1764, 2036
Mph1103I	ATGCAT	1 cut(s)	1627
MroXI	GAANNNNTTC	1 cut(s)	1455
MslI	CAYNNNNRTG	1 cut(s)	1616
MspA1I	CMGCKG	1 cut(s)	1868
MspCI	CTTAAG	1 cut(s)	1772
MspI	CCGG	1 cut(s)	568
MspR9I	CCNGG	1 cut(s)	569
MunI	CAATTG	1 cut(s)	1509
MwoI	GCNNNNNNNGC	3 cut(s)	1323, 1476, 1675
NciI	CCSGG	1 cut(s)	569
NdeII	GATC	5 cut(s)	39, 128, 421, 505, 2185
NlaIV	GGNNCC	3 cut(s)	369, 572, 1585
NmeAIII	GCCGAG	1 cut(s)	655
NmuCI	GTSAC	1 cut(s)	1390
NsiI	ATGCAT	1 cut(s)	1627
NspI	RCATGY	2 cut(s)	357, 1888
PaeI	GCATGC	1 cut(s)	357
PagI	TCATGA	3 cut(s)	303, 1459, 1827
PceI	AGGCCT	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	1250
PcsI	WCGNNNNNNNCGW	1 cut(s)	2142
PdmI	GAANNNNTTC	1 cut(s)	1455
PfeI	GAWTC	4 cut(s)	266, 653, 1101, 1903
PflMI	CCANNNNNTGG	1 cut(s)	1255
PkrI	GCNGC	5 cut(s)	230, 409, 412, 1129, 1810
PpuMI	RGGWCCY	3 cut(s)	367, 571, 1663
Psp124BI	GAGCTC	1 cut(s)	444
Psp1406I	AACGTT	1 cut(s)	2136
Psp5II	RGGWCCY	3 cut(s)	367, 571, 1663
PspN4I	GGNNCC	3 cut(s)	369, 572, 1585
PspOMI	GGGCCC	1 cut(s)	1583
PspPI	GGNCC	7 cut(s)	367, 571, 814, 1477, 1583, 1584, 1663
PspPPI	RGGWCCY	3 cut(s)	367, 571, 1663
PstI	CTGCAG	2 cut(s)	412, 915
PsuI	RGATCY	3 cut(s)	39, 421, 2185
RsaI	GTAC	8 cut(s)	198, 399, 855, 877, 1062, 1609, 1838, 1861
RsaNI	GTAC	8 cut(s)	197, 398, 854, 876, 1061, 1608, 1837, 1860
RseI	CAYNNNNRTG	1 cut(s)	1616
SacI	GAGCTC	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	1250
SatI	GCNGC	5 cut(s)	229, 408, 411, 1128, 1809
Sau3AI	GATC	5 cut(s)	39, 128, 421, 505, 2185
Sau96I	GGNCC	7 cut(s)	367, 571, 814, 1477, 1583, 1584, 1663
ScaI	AGTACT	3 cut(s)	877, 1062, 1838
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	3 cut(s)	444, 1587, 2035
SfaNI	GCATC	7 cut(s)	175, 213, 422, 579, 1612, 1665, 1747
SfcI	CTRYAG	4 cut(s)	408, 911, 1698, 1863
SinI	GGWCC	3 cut(s)	367, 571, 1663
SmiMI	CAYNNNNRTG	1 cut(s)	1616
SmlI	CTYRAG	1 cut(s)	1772
SmoI	CTYRAG	1 cut(s)	1772
SpeI	ACTAGT	1 cut(s)	328
SphI	GCATGC	1 cut(s)	357
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	6 cut(s)	58, 1153, 1808, 1868, 2069, 2111
SspI	AATATT	4 cut(s)	67, 310, 772, 1120
SspMI	CTAG	2 cut(s)	329, 2183
SstI	GAGCTC	1 cut(s)	444
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	567
TaaI	ACNGT	2 cut(s)	1702, 2030
TaiI	ACGT	2 cut(s)	1467, 2139
TaqI	TCGA	4 cut(s)	726, 793, 1680, 2145
TaqII	GACCGA	1 cut(s)	470
TatI	WGTACW	5 cut(s)	196, 397, 875, 1060, 1836
TauI	GCSGC	1 cut(s)	1811
TfiI	GAWTC	4 cut(s)	266, 653, 1101, 1903
TscAI	CASTG	1 cut(s)	2035
TseFI	GTSAC	1 cut(s)	1390
TseI	GCWGC	4 cut(s)	228, 407, 410, 1127
Tsp45I	GTSAC	1 cut(s)	1390
TspRI	CASTG	1 cut(s)	2035
Van91I	CCANNNNNTGG	1 cut(s)	1255
Vha464I	CTTAAG	1 cut(s)	1772
VneI	GTGCAC	1 cut(s)	2031
VpaK11BI	GGWCC	3 cut(s)	367, 571, 1663
XapI	RAATTY	6 cut(s)	76, 117, 716, 964, 1872, 2063
XbaI	TCTAGA	1 cut(s)	2182
XceI	RCATGY	2 cut(s)	357, 1888
XmiI	GTMKAC	1 cut(s)	1080
XmnI	GAANNNNTTC	1 cut(s)	1455
XspI	CTAG	2 cut(s)	329, 2183
ZrmI	AGTACT	3 cut(s)	877, 1062, 1838
Zsp2I	ATGCAT	1 cut(s)	1627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.