Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005286

Physical Location & Seq

Genomic Coordinates Forward (+)

32814882 .. 32818491

Gene Structure 3610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35550.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2241 bp

ATGAAGAGGTGCACCGTCTTCTCAGACTATTGTTGTCAGATTTTTGGTTATCGCGCCCGGTTAAATGGTTTGAATGGTTCAGTGTTCTTGTTTAGAAGTGTTAGCAATATGTTGTCATCTGGCTCGACAGATATGAGGCCTTTTCCTGACTACTCCCCCAAGAGACCAACCATCAAGGATGCTGAACTTGTCCATGGCATCTCCACCACAATAAAGTTGCGCAGATTTGAGCCCTTGCGCAGGATTCTGAAGCATTATGAATCTAAGTTCAGGTCTGACCATCTAATTTGGGTGCTCATGAATATCAAGAGTGACTATAAGCTGGTTTTGGATTTGTTTGATTGGGCATGCTTACGTAGGGATCCAACTCTGGAAGCTCGTTGCATTGTTGTGCACATTGCTGCAGCATCAAATGATCTTAAAACAGCTCATGGGCTAATCCGTGATTTTTGGGCAAAACCCAAGTTAGATGTCAGTCTTTCATGCACTCACTTCAGTGACCGGTTGATATACACTTACAAGGACTGGGGTTCAGAACCCCATGTGTTTGATGTTTTCTTCCAGGTCCTTGTTGAACTTGGAATCCTCAACGAAGCAAGAAAACTTTTTGATAAGCTGTTAAGTTATGGATTGGTTATCTCAGTTGATTCCTGTAATTTCTTTCTTTCTCGTTTAGCAAGCAGCTCTGATGGAATTGAGATGGCAATAAAGTTTTTCAATGAATATCTTGAAGTGGGTGTTCATTGGAACACATCATCATATAATATTATCATTCATTCCCTCTGTCGATTAGAGAAGATAAAAGAAGCCCACCAGTTACTACTGCTAATGGAGTTGAAGGGTTGTTTGCCTGATGTTGTAAGTTATAGTACTTTAATCAGCCGATATTGTCATGTTGGAGAACTACAGCATGTGTTGAAACTCATAGAAGAGATGAATAGTAAGGGATTGAAAACAAATTCCTATACCTATAACAGCATAATACTTCTTCTCTGCAAGACTGGAAAACTATCTGAAGCGGAAATGATATTGAGGGAAATGCTGGTTCTGGGAGTACTTCCTGATTATGTCATCTACACAACTCTAATTGATGGTTTCTGTAAGTCTGGGAATGTTCCAGCTGCTTGGAGGCTGTTCGATGAAATGCGGGTTAGGAAAGTTATCCCAGATTTTATAACCTATACTGCTATCATTCATGGATTCTGTCAAACAGGGAAGATGATGGATGCAGATAAGCTCTTTCACGAAATGGTTAGTAAAGGGTTGGAACCAGATGAAGTTACTTATACATCACTTATTGATGGTTATTGCAAAGCAGGTCAGATGAAAGAGGCCTTTTCTCTTCACAACCAGATGGTTAGTATGGGGCTGAGACCAAATGTTGTCACCTATACTGCACTGGCTGATGGTCTTTGTAAACGAGGGGAAGTAGATATAGCAAACGAACTTCTTCATGAGGTGTGCAGGAAAGGCCTTCAACTTAATGTCTGCACATACAATACGATTGTTAACGGTCTCTGTAAAATGGGAGATATAGGGCAAGCAGAAGAATTGATGAAACAAATGGAGGTTGCAGGACCCCATCCTGATACTATTACTTATACGACTCTCATGGATGCATACTGTAAGACAGGGCAGATGGCTAAGGCTCACAAGGTCCTTCGTGAGATGCTGGATAAAGGGCTTCAACCTACAGTTGTTACATTTAATGTACTGATGAATGGGTTTTGCATGTCAGGAATGCTAGAAGATGGTGAGAAGTTACTTAAATGGATGTTAGATAAAGGTATTGCGCCTAATGCCACCACCTACAATTCTCTAATGAAGCAGTACTGCATTAGAAATAACATGCGTGCTACGACTGAGATGTTAAAGGGCATGTCTGCTAGTGGAGTGATGCCTGATAACAACACGTATAACATTTTAATAAAAGGGCATTGCAAACAAAGGAATATGAAGGAAGCATGGTTTTTGCACAAAGAAATGGCAGGGAAGGGATTTATTCTTACAGCTAGTTCCTACATTGCACTTATTAATGGTTTTCTTAAGAGAAAGAAGTTTGTGGCGGCAAGAGAACTCTTTGAAGAGATGAGAAGACAAGGGTTAGTAGCAAATAGAGAAATTTACAACATCTTTGCTGATATGAACTATGAAGAAGGAAACATGGACAGTACTCTTGAGCTTTGTGATGAAGTAATAGAGAATTGTCTTGGTGGCGAGTCCAAATATGAAGACACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0012505 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

747

Amino Acids

84.95

Weight (kDa)

7.47

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	250 - 298	6.4e-13	PPR repeat family
PPR_1	PF12854	280 - 312	2.4e-07	PPR repeat
PPR_2	PF13041	284 - 328	7.8e-13	PPR repeat family
PPR_long	PF17177	302 - 444	2.2e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	315 - 347	3e-07	PPR repeat
PPR_2	PF13041	320 - 355	4.4e-06	PPR repeat family
PPR	PF01535	322 - 352	4.5e-06	PPR repeat
PPR_3	PF13812	343 - 399	5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	351 - 383	1.7e-11	PPR repeat
PPR_2	PF13041	354 - 403	1.1e-17	PPR repeat family
PPR	PF01535	357 - 386	1.1e-07	PPR repeat
PPR_1	PF12854	388 - 418	1.8e-09	PPR repeat
PPR_2	PF13041	389 - 438	9.7e-20	PPR repeat family
PPR	PF01535	392 - 422	2.7e-08	PPR repeat
PPR_3	PF13812	412 - 467	7.9e-11	Pentatricopeptide repeat domain
TPR_24	PF23276	419 - 521	1.6e-10	Fungal tetratrico peptide repeats
PPR_1	PF12854	420 - 453	1.5e-14	PPR repeat
PPR_2	PF13041	424 - 473	3.1e-20	PPR repeat family
PPR	PF01535	427 - 457	1.4e-10	PPR repeat
PPR_long	PF17177	443 - 577	5.3e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	455 - 486	3.5e-09	PPR repeat
PPR_2	PF13041	469 - 508	3.5e-09	PPR repeat family
PPR_1	PF12854	490 - 523	3.2e-12	PPR repeat
PPR_2	PF13041	495 - 543	2.5e-15	PPR repeat family
PPR	PF01535	498 - 526	5.8e-06	PPR repeat
PPR_3	PF13812	518 - 575	1.2e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	526 - 557	4.6e-10	PPR repeat
PPR_2	PF13041	529 - 577	6e-19	PPR repeat family
PPR	PF01535	532 - 562	1.9e-08	PPR repeat
PPR_1	PF12854	560 - 592	2.5e-08	PPR repeat
PPR_2	PF13041	564 - 612	3.9e-15	PPR repeat family
PPR_long	PF17177	582 - 679	2.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	588 - 644	3.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	599 - 648	1.7e-12	PPR repeat family
PPR_1	PF12854	631 - 662	5e-08	PPR repeat
PPR_2	PF13041	634 - 683	1.9e-10	PPR repeat family
PPR	PF01535	638 - 667	1.7e-06	PPR repeat
PPR_2	PF13041	672 - 712	6.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05670 AT1G05670 AT1G05670
fragaria_vesca	FvH4_4g35550 FvH4_4g35550
malus_domestica	MD13G1082300.v1.1 MD16G1081400.v1.1
prunus_persica	Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1
pyrus_communis	pycom13g07090 pycom16g07020
rosa_chinensis	RchiOBHm_Chr4g0445191
rosa_laevigata	RLG00000005758
rosa_multiflora	Rmu_co8367507.1_g000001 Rmu_sc0000050.1_g000035
rosa_roxburghii	Rroxscaffold_5G00385710
rosa_rugosa	Rorug04G0359800 Rorug04G0359900
rosa_samantha	Rh4AG420700 Rh4BG432600 Rh4CG447200 Rh4DG428700
rosa_wichuraiana	Rw4G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1175
Acc16I	TGCGCA	2 cut(s)	221, 239
Acc36I	ACCTGC	1 cut(s)	1307
AccII	CGCG	1 cut(s)	54
AciI	CCGC	3 cut(s)	1019, 1147, 2066
AclWI	GGATC	2 cut(s)	356, 369
AcsI	RAATTY	2 cut(s)	958, 2121
AcuI	CTGAAG	3 cut(s)	269, 478, 1035
AfaI	GTAC	5 cut(s)	871, 1056, 1713, 1832, 2173
AfiI	CCNNNNNNNGG	1 cut(s)	240
AflII	CTTAAG	1 cut(s)	2045
AflIII	ACRYGT	1 cut(s)	1911
AgeI	ACCGGT	1 cut(s)	501
AjnI	CCWGG	1 cut(s)	561
AleI	CACNNNNGTG	1 cut(s)	495
AloI	GAACNNNNNNTCC	2 cut(s)	567, 599
AluBI	AGCT	9 cut(s)	322, 377, 428, 616, 684, 1121, 1237, 2012, 2182
AluI	AGCT	9 cut(s)	322, 377, 428, 616, 684, 1121, 1237, 2012, 2182
Alw21I	GWGCWC	3 cut(s)	14, 297, 396
Alw26I	GTCTC	3 cut(s)	157, 1366, 1520
Alw44I	GTGCAC	2 cut(s)	10, 392
AlwI	GGATC	2 cut(s)	356, 369
AoxI	GGCC	3 cut(s)	137, 1332, 1471
ApaLI	GTGCAC	2 cut(s)	10, 392
ApeKI	GCWGC	4 cut(s)	401, 404, 681, 1121
ApoI	RAATTY	2 cut(s)	958, 2121
AseI	ATTAAT	1 cut(s)	2034
AsiGI	ACCGGT	1 cut(s)	501
Asp700I	GAANNNNTTC	1 cut(s)	1449
AspLEI	GCGC	4 cut(s)	56, 222, 240, 1795
AspS9I	GGNCC	3 cut(s)	565, 1577, 1657
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	1378, 1766
AvaII	GGWCC	3 cut(s)	565, 1577, 1657
BaeGI	GKGCMC	2 cut(s)	14, 396
BamHI	GGATCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	234
BbsI	GAAGAC	2 cut(s)	10, 2101
Bbv12I	GWGCWC	3 cut(s)	14, 297, 396
BbvI	GCAGC	4 cut(s)	388, 416, 693, 1108
BciT130I	CCWGG	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	3 cut(s)	157, 1366, 1520
BfaI	CTAG	3 cut(s)	1745, 1887, 2013
BfmI	CTRYAG	3 cut(s)	402, 905, 1692
BfrI	CTTAAG	1 cut(s)	2045
BfuAI	ACCTGC	1 cut(s)	1307
BisI	GCNGC	5 cut(s)	402, 405, 682, 1122, 2067
BlsI	GCNGC	5 cut(s)	403, 406, 683, 1123, 2068
BmcAI	AGTACT	4 cut(s)	871, 1056, 1832, 2173
Bme1390I	CCNGG	2 cut(s)	58, 563
Bme18I	GGWCC	3 cut(s)	565, 1577, 1657
BmgT120I	GGNCC	3 cut(s)	565, 1577, 1657
BmiI	GGNNCC	3 cut(s)	363, 1269, 1579
BmrFI	CCNGG	2 cut(s)	58, 563
BmrI	ACTGGG	1 cut(s)	535
BmsI	GCATC	7 cut(s)	169, 207, 416, 1216, 1606, 1659, 1887
BmuI	ACTGGG	1 cut(s)	535
BpiI	GAAGAC	2 cut(s)	10, 2101
Bpu10I	CCTNAGC	1 cut(s)	1644
BpuEI	CTTGAG	1 cut(s)	2198
BpuMI	CCSGG	1 cut(s)	58
BsaAI	YACGTR	2 cut(s)	356, 1914
BsaI	GGTCTC	3 cut(s)	157, 1366, 1520
BsaJI	CCNNGG	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	501
Bse1I	ACTGG	4 cut(s)	530, 814, 1006, 1404
Bse3DI	GCAATG	3 cut(s)	396, 1936, 2022
BseBI	CCWGG	1 cut(s)	563
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	5 cut(s)	184, 1231, 1582, 1621, 1779
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	3 cut(s)	396, 1936, 2022
BseMII	CTCAG	4 cut(s)	36, 654, 1361, 1854
BseNI	ACTGG	4 cut(s)	530, 814, 1006, 1404
BseSI	GKGCMC	2 cut(s)	14, 396
BseXI	GCAGC	4 cut(s)	388, 416, 693, 1108
BsgI	GTGCAG	3 cut(s)	1380, 1474, 1483
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	139, 1334, 1473
BshTI	ACCGGT	1 cut(s)	501
BsiHKAI	GWGCWC	3 cut(s)	14, 297, 396
BsiSI	CCGG	2 cut(s)	58, 502
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	3 cut(s)	157, 1366, 1520
BsmI	GAATGC	1 cut(s)	1746
BsnI	GGCC	3 cut(s)	139, 1334, 1473
Bso31I	GGTCTC	3 cut(s)	157, 1366, 1520
Bsp1286I	GDGCHC	4 cut(s)	14, 234, 297, 396
Bsp143I	GATC	2 cut(s)	361, 415
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	3 cut(s)	1019, 1147, 2066
BspANI	GGCC	3 cut(s)	139, 1334, 1473
BspCNI	CTCAG	4 cut(s)	35, 653, 1362, 1855
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	2 cut(s)	297, 1453
BspLI	GGNNCC	3 cut(s)	363, 1269, 1579
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	1307
BspPI	GGATC	2 cut(s)	356, 369
BspTI	CTTAAG	1 cut(s)	2045
BspTNI	GGTCTC	3 cut(s)	157, 1366, 1520
BsrDI	GCAATG	3 cut(s)	396, 1936, 2022
BsrFI	RCCGGY	1 cut(s)	501
BsrI	ACTGG	4 cut(s)	530, 814, 1006, 1404
BssAI	RCCGGY	1 cut(s)	501
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	2 cut(s)	361, 415
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	5 cut(s)	16, 1514, 1625, 1696, 2171
Bst6I	CTCTTC	3 cut(s)	924, 1347, 2079
BstAFI	CTTAAG	1 cut(s)	2045
BstBAI	YACGTR	2 cut(s)	356, 1914
BstC8I	GCNNGC	4 cut(s)	349, 679, 1542, 1854
BstDEI	CTNAG	6 cut(s)	22, 264, 640, 1370, 1644, 1863
BstDSI	CCRYGG	1 cut(s)	193
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	5 cut(s)	184, 1231, 1582, 1621, 1779
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	4 cut(s)	56, 222, 240, 1795
BstKTI	GATC	2 cut(s)	364, 418
BstMAI	GTCTC	3 cut(s)	157, 1366, 1520
BstMBI	GATC	2 cut(s)	361, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	1470, 1799
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	5 cut(s)	351, 914, 1735, 1852, 1882
BstSCI	CCNGG	2 cut(s)	56, 561
BstSFI	CTRYAG	3 cut(s)	402, 905, 1692
BstSLI	GKGCMC	2 cut(s)	14, 396
BstSNI	TACGTA	1 cut(s)	356
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	4 cut(s)	388, 416, 693, 1108
BstV2I	GAAGAC	2 cut(s)	10, 2101
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	1125
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	139, 1334, 1473
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	5 cut(s)	184, 1231, 1582, 1621, 1779
BtsIMutI	CAGTG	3 cut(s)	87, 502, 1397
BveI	ACCTGC	1 cut(s)	1307
Cac8I	GCNNGC	4 cut(s)	349, 679, 1542, 1854
CciI	TCATGA	2 cut(s)	297, 1453
CfoI	GCGC	4 cut(s)	56, 222, 240, 1795
Cfr10I	RCCGGY	1 cut(s)	501
Cfr13I	GGNCC	3 cut(s)	565, 1577, 1657
Csp6I	GTAC	5 cut(s)	870, 1055, 1712, 1831, 2172
CspAI	ACCGGT	1 cut(s)	501
CviQI	GTAC	5 cut(s)	870, 1055, 1712, 1831, 2172
DdeI	CTNAG	6 cut(s)	22, 264, 640, 1370, 1644, 1863
DpnI	GATC	2 cut(s)	363, 417
DpnII	GATC	2 cut(s)	361, 415
Eam1104I	CTCTTC	3 cut(s)	924, 1347, 2079
EarI	CTCTTC	3 cut(s)	924, 1347, 2079
Eco105I	TACGTA	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	193
Eco147I	AGGCCT	3 cut(s)	139, 1334, 1473
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	3 cut(s)	157, 1366, 1520
Eco47I	GGWCC	3 cut(s)	565, 1577, 1657
Eco57I	CTGAAG	3 cut(s)	269, 478, 1035
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoO109I	RGGNCCY	3 cut(s)	565, 1577, 1657
EcoRII	CCWGG	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	1621
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	193
FauI	CCCGC	1 cut(s)	1140
Fnu4HI	GCNGC	5 cut(s)	402, 405, 682, 1122, 2067
FokI	GGATG	5 cut(s)	191, 1238, 1569, 1628, 1786
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	5 cut(s)	402, 405, 682, 1122, 2067
FspBI	CTAG	3 cut(s)	1745, 1887, 2013
FspI	TGCGCA	2 cut(s)	221, 239
GlaI	GCGC	4 cut(s)	55, 221, 239, 1794
GluI	GCNGC	5 cut(s)	402, 405, 682, 1122, 2067
HaeIII	GGCC	3 cut(s)	139, 1334, 1473
HapII	CCGG	2 cut(s)	58, 502
HhaI	GCGC	4 cut(s)	56, 222, 240, 1795
Hin6I	GCGC	4 cut(s)	54, 220, 238, 1793
HinP1I	GCGC	4 cut(s)	54, 220, 238, 1793
HincII	GTYRAC	1 cut(s)	1510
HindII	GTYRAC	1 cut(s)	1510
HinfI	GANTC	7 cut(s)	244, 260, 582, 647, 1200, 1606, 2219
HpaI	GTTAAC	1 cut(s)	1510
HpaII	CCGG	2 cut(s)	58, 502
HphI	GGTGA	2 cut(s)	1378, 1766
Hpy166II	GTNNAC	4 cut(s)	12, 394, 1418, 1510
Hpy188I	TCNGA	8 cut(s)	25, 39, 249, 277, 535, 688, 1015, 1323
Hpy8I	GTNNAC	4 cut(s)	12, 394, 1418, 1510
HpyAV	CCTTC	6 cut(s)	832, 1484, 1670, 1951, 1987, 2150
HpyCH4III	ACNGT	5 cut(s)	16, 1514, 1625, 1696, 2171
HpyCH4IV	ACGT	2 cut(s)	355, 1913
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1470, 1799
HpyF3I	CTNAG	6 cut(s)	22, 264, 640, 1370, 1644, 1863
HpySE526I	ACGT	2 cut(s)	355, 1913
HspAI	GCGC	4 cut(s)	54, 220, 238, 1793
KspAI	GTTAAC	1 cut(s)	1510
Kzo9I	GATC	2 cut(s)	361, 415
Lsp1109I	GCAGC	4 cut(s)	388, 416, 693, 1108
LweI	GCATC	7 cut(s)	169, 207, 416, 1216, 1606, 1659, 1887
MaeI	CTAG	3 cut(s)	1745, 1887, 2013
MaeII	ACGT	2 cut(s)	355, 1913
MaeIII	GTNAC	7 cut(s)	311, 497, 816, 1279, 1384, 1699, 1761
MalI	GATC	2 cut(s)	363, 417
MboI	GATC	2 cut(s)	361, 415
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	4 cut(s)	14, 234, 297, 396
MluCI	AATT	9 cut(s)	285, 655, 693, 958, 1086, 1550, 1813, 2121, 2203
MlyI	GAGTC	2 cut(s)	1600, 2228
MmeI	TCCRAC	3 cut(s)	389, 877, 1245
MnlI	CCTC	9 cut(s)	129, 596, 791, 1026, 1122, 1324, 1415, 1450, 1561
Mph1103I	ATGCAT	1 cut(s)	1621
MroXI	GAANNNNTTC	1 cut(s)	1449
MslI	CAYNNNNRTG	2 cut(s)	389, 495
MspA1I	CMGCKG	1 cut(s)	1121
MspCI	CTTAAG	1 cut(s)	2045
MspI	CCGG	2 cut(s)	58, 502
MspR9I	CCNGG	2 cut(s)	58, 563
Mva1269I	GAATGC	1 cut(s)	1746
MvaI	CCWGG	1 cut(s)	563
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	1470, 1799
NciI	CCSGG	1 cut(s)	58
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	2 cut(s)	361, 415
NlaIV	GGNNCC	3 cut(s)	363, 1269, 1579
NmuCI	GTSAC	3 cut(s)	311, 497, 1384
NsbI	TGCGCA	2 cut(s)	221, 239
NsiI	ATGCAT	1 cut(s)	1621
NspI	RCATGY	5 cut(s)	351, 914, 1735, 1852, 1882
OliI	CACNNNNGTG	1 cut(s)	495
PaeI	GCATGC	1 cut(s)	351
PagI	TCATGA	2 cut(s)	297, 1453
PceI	AGGCCT	3 cut(s)	139, 1334, 1473
PctI	GAATGC	1 cut(s)	1746
PdmI	GAANNNNTTC	1 cut(s)	1449
PfeI	GAWTC	5 cut(s)	244, 260, 582, 647, 1200
PinAI	ACCGGT	1 cut(s)	501
PkrI	GCNGC	5 cut(s)	403, 406, 683, 1123, 2068
PleI	GAGTC	2 cut(s)	1600, 2227
PpsI	GAGTC	2 cut(s)	1600, 2227
Ppu21I	YACGTR	2 cut(s)	356, 1914
PpuMI	RGGWCCY	3 cut(s)	565, 1577, 1657
PshBI	ATTAAT	1 cut(s)	2034
PsiI	TTATAA	1 cut(s)	1175
Psp5II	RGGWCCY	3 cut(s)	565, 1577, 1657
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	3 cut(s)	363, 1269, 1579
PspPI	GGNCC	3 cut(s)	565, 1577, 1657
PspPPI	RGGWCCY	3 cut(s)	565, 1577, 1657
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	1121
RsaI	GTAC	5 cut(s)	871, 1056, 1713, 1832, 2173
RsaNI	GTAC	5 cut(s)	870, 1055, 1712, 1831, 2172
RseI	CAYNNNNRTG	2 cut(s)	389, 495
SatI	GCNGC	5 cut(s)	402, 405, 682, 1122, 2067
Sau3AI	GATC	2 cut(s)	361, 415
Sau96I	GGNCC	3 cut(s)	565, 1577, 1657
ScaI	AGTACT	4 cut(s)	871, 1056, 1832, 2173
SchI	GAGTC	2 cut(s)	1600, 2228
ScrFI	CCNGG	2 cut(s)	58, 563
SduI	GDGCHC	4 cut(s)	14, 234, 297, 396
SfaNI	GCATC	7 cut(s)	169, 207, 416, 1216, 1606, 1659, 1887
SfcI	CTRYAG	3 cut(s)	402, 905, 1692
SinI	GGWCC	3 cut(s)	565, 1577, 1657
SmiMI	CAYNNNNRTG	2 cut(s)	389, 495
SmlI	CTYRAG	2 cut(s)	2045, 2177
SmoI	CTYRAG	2 cut(s)	2045, 2177
SnaBI	TACGTA	1 cut(s)	356
SphI	GCATGC	1 cut(s)	351
Sse9I	AATT	9 cut(s)	285, 655, 693, 958, 1086, 1550, 1813, 2121, 2203
SseBI	AGGCCT	3 cut(s)	139, 1334, 1473
SsiI	CCGC	3 cut(s)	1019, 1147, 2066
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	3 cut(s)	1745, 1887, 2013
StuI	AGGCCT	3 cut(s)	139, 1334, 1473
StyD4I	CCNGG	2 cut(s)	56, 561
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	5 cut(s)	16, 1514, 1625, 1696, 2171
TaiI	ACGT	2 cut(s)	358, 1916
TaqI	TCGA	3 cut(s)	125, 787, 1137
TasI	AATT	9 cut(s)	285, 655, 693, 958, 1086, 1550, 1813, 2121, 2203
TatI	WGTACW	5 cut(s)	869, 1054, 1711, 1830, 2171
TauI	GCSGC	1 cut(s)	2069
TfiI	GAWTC	5 cut(s)	244, 260, 582, 647, 1200
TscAI	CASTG	3 cut(s)	87, 502, 1404
TseFI	GTSAC	3 cut(s)	311, 497, 1384
TseI	GCWGC	4 cut(s)	401, 404, 681, 1121
Tsp45I	GTSAC	3 cut(s)	311, 497, 1384
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	3 cut(s)	87, 502, 1404
Vha464I	CTTAAG	1 cut(s)	2045
VneI	GTGCAC	2 cut(s)	10, 392
VpaK11BI	GGWCC	3 cut(s)	565, 1577, 1657
VspI	ATTAAT	1 cut(s)	2034
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	2 cut(s)	958, 2121
XceI	RCATGY	5 cut(s)	351, 914, 1735, 1852, 1882
XmnI	GAANNNNTTC	1 cut(s)	1449
XspI	CTAG	3 cut(s)	1745, 1887, 2013
ZrmI	AGTACT	4 cut(s)	871, 1056, 1832, 2173
Zsp2I	ATGCAT	1 cut(s)	1621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.