AT1G05720

Sep15/SelM redox domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014141
Physical Location & Seq
Reverse (-)
1717389 .. 1718909
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05720.1

Sequence Viewer

Length: 492 bp
ATGAAACAGAGAGAGATGGCGAAGATGGTTGTTTTATCAGCGATGATGATTTTGATATTGGCATCGACGATCTCAGCAAAAGAGCAGCTCAGCACTAAAGAATGTGAGGATCTAGGGTTTAGCGGTCTTGCACTCTGCTCCGATTGCCACTCACTCTCTGAATACGTTAAGGACCAAGAGTTGGTATCTGATTGCTTGAAATGTTGTGCTGATGATTCTGAGGATTCCATGAGCAAGGTTACCTATTCTGGCGCTATATTAGAGGTGTGTATGAGGAAGTTGGTTTTCTATCCTGAAATTGTTGGTTTCATTGAAGAAGAGAAAGAAAAGTTCCCTAGCGTCAAAGTTCAGTACATTTTCAACTCACCACCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGTCAAGCCTACTGCAGCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sep15_SelM

Protein Analysis

163

Amino Acids

18.57

Weight (kDa)

5.07

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sep15_SelM PF08806 84 - 157 1e-28 Sep15/SelM redox domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05720
fragaria_vesca FvH4_4g10450 FvH4_4g10450
malus_domestica MD04G1049100.v1.1 MD17G1177800.v1.1
prunus_persica Prupe.1G207200_v2.0.a1
pyrus_communis pycom04g04330
rosa_chinensis RchiOBHm_Chr4g0405941
rosa_laevigata RLG00000008809
rosa_multiflora Rmu_ssc0000087.1_g000072
rosa_roxburghii Rroxscaffold_5G00350680
rosa_rugosa Rorug04G0064200
rosa_samantha Rh4AG135000 Rh4BG130600 Rh4CG142400 Rh4DG129300
rosa_wichuraiana Rw4G010990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 181
AccII CGCG 1 cut(s) 438
AciI CCGC 1 cut(s) 123
AclWI GGATC 1 cut(s) 117
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 3 cut(s) 199, 314, 361
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
AlwI GGATC 1 cut(s) 117
ApeKI GCWGC 2 cut(s) 85, 482
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 357, 410
AvaII GGWCC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 97
BccI CCATC 2 cut(s) 10, 19
BclI TGATCA 1 cut(s) 378
BfaI CTAG 2 cut(s) 113, 336
BfmI CTRYAG 2 cut(s) 449, 480
BfoI RGCGCY 1 cut(s) 255
BisI GCNGC 2 cut(s) 86, 483
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 2 cut(s) 87, 484
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmsI GCATC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 399
Bpu1102I GCTNAGC 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 434
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMII CTCAG 3 cut(s) 87, 103, 210
BseNI ACTGG 1 cut(s) 434
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 438
BslI CCNNNNNNNGG 1 cut(s) 181
Bsp143I GATC 3 cut(s) 69, 109, 378
Bsp1720I GCTNAGC 1 cut(s) 89
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 3 cut(s) 86, 102, 211
BspFNI CGCG 1 cut(s) 438
BspMAI CTGCAG 2 cut(s) 453, 484
BspPI GGATC 1 cut(s) 117
BsrI ACTGG 1 cut(s) 434
BssMI GATC 3 cut(s) 69, 109, 378
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 312
BstAPI GCANNNNNTGC 1 cut(s) 457
BstDEI CTNAG 3 cut(s) 73, 89, 219
BstEII GGTNACC 1 cut(s) 238
BstFNI CGCG 1 cut(s) 438
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 3 cut(s) 72, 112, 381
BstMBI GATC 3 cut(s) 69, 109, 378
BstMWI GCNNNNNNNGC 2 cut(s) 144, 457
BstPI GGTNACC 1 cut(s) 238
BstSFI CTRYAG 2 cut(s) 449, 480
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 56
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 172
CseI GACGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 352
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 2 cut(s) 229, 382
CviJI RGCY 2 cut(s) 88, 475
CviKI_1 RGCY 2 cut(s) 88, 475
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 3 cut(s) 73, 89, 219
DpnI GATC 3 cut(s) 71, 111, 380
DpnII GATC 3 cut(s) 69, 109, 378
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 172
Eco91I GGTNACC 1 cut(s) 238
EcoO65I GGTNACC 1 cut(s) 238
FaeI CATG 2 cut(s) 232, 385
FaiI YATR 7 cut(s) 230, 257, 272, 383, 405, 456, 458
FatI CATG 2 cut(s) 228, 381
FbaI TGATCA 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 86, 483
Fsp4HI GCNGC 2 cut(s) 86, 483
FspBI CTAG 2 cut(s) 113, 336
GlaI GCGC 1 cut(s) 253
GluI GCNGC 2 cut(s) 86, 483
HaeII RGCGCY 1 cut(s) 255
HgaI GACGC 1 cut(s) 328
HhaI GCGC 1 cut(s) 254
Hin1II CATG 2 cut(s) 232, 385
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 4 cut(s) 215, 224, 410, 420
HphI GGTGA 2 cut(s) 357, 410
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 4 cut(s) 142, 160, 190, 220
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 401
Hpy99I CGWCG 2 cut(s) 70, 392
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 131, 451, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 457
HpyF3I CTNAG 3 cut(s) 73, 89, 219
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 232, 385
HspAI GCGC 1 cut(s) 252
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 3 cut(s) 69, 109, 378
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 3 cut(s) 234, 306, 415
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 71
MaeI CTAG 2 cut(s) 113, 336
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 238
MalI GATC 3 cut(s) 71, 111, 380
MboI GATC 3 cut(s) 69, 109, 378
MboII GAAGA 4 cut(s) 34, 326, 329, 404
MflI RGATCY 1 cut(s) 109
MluCI AATT 2 cut(s) 297, 414
MnlI CCTC 4 cut(s) 100, 214, 256, 267
MseI TTAA 1 cut(s) 168
MvnI CGCG 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 144, 457
NdeII GATC 3 cut(s) 69, 109, 378
NlaIII CATG 2 cut(s) 232, 385
PfeI GAWTC 4 cut(s) 215, 224, 410, 420
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 2 cut(s) 87, 484
PspEI GGTNACC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 172
PstI CTGCAG 2 cut(s) 453, 484
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 86, 483
Sau3AI GATC 3 cut(s) 69, 109, 378
Sau96I GGNCC 1 cut(s) 172
SetI ASST 6 cut(s) 90, 168, 240, 245, 267, 471
SfaNI GCATC 1 cut(s) 71
SfcI CTRYAG 2 cut(s) 449, 480
SinI GGWCC 1 cut(s) 172
Sse9I AATT 2 cut(s) 297, 414
SsiI CCGC 1 cut(s) 123
SspMI CTAG 2 cut(s) 113, 336
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 65, 387, 423
TasI AATT 2 cut(s) 297, 414
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 4 cut(s) 215, 224, 410, 420
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseI GCWGC 2 cut(s) 85, 482
TspDTI ATGAA 2 cut(s) 17, 298
Van91I CCANNNNNTGG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 172
XspI CTAG 2 cut(s) 113, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.