Rh4CG142400

15 kDa selenoprotein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
28485703 .. 28489884
4182 bp
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UTR
Exon/CDS
Intron
Rh4CG142400.1

Sequence Viewer

Length: 231 bp
ATGGGGGGAGCGTGGATCGCGACGACTATGGTAGTGGTGGTGTGTTTGGTAGGTGCGTCATCATCGGTAGAGCAGCTGAGCACTAGAGAATGTGAGAATCTTGGTTTCACTGGGCTTGCTTTGTGCTCTGATTGCAACAGTTTGGCTGACTATGTCAAAGACCAAGAATTGGTATCAGACTGTAAGAAGTGTTGCACTCAGGATTCCAATGATTCCATGACTAAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.06

Weight (kDa)

4.24

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05720
fragaria_vesca FvH4_4g10450 FvH4_4g10450
malus_domestica MD04G1049100.v1.1 MD17G1177800.v1.1
prunus_persica Prupe.1G207200_v2.0.a1
pyrus_communis pycom04g04330
rosa_chinensis RchiOBHm_Chr4g0405941
rosa_laevigata RLG00000008809
rosa_multiflora Rmu_ssc0000087.1_g000072
rosa_roxburghii Rroxscaffold_5G00350680
rosa_rugosa Rorug04G0064200
rosa_samantha Rh4AG135000 Rh4BG130600 Rh4CG142400 Rh4DG129300
rosa_wichuraiana Rw4G010990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 169
AccII CGCG 1 cut(s) 20
AclWI GGATC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw21I GWGCWC 2 cut(s) 83, 128
AlwI GGATC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 73
Bbv12I GWGCWC 2 cut(s) 83, 128
BbvI GCAGC 1 cut(s) 85
BfaI CTAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 74
BlpI GCTNAGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 68, 212
BseNI ACTGG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 20
BsiHKAI GWGCWC 2 cut(s) 83, 128
BslI CCNNNNNNNGG 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 83, 128
Bsp143I GATC 1 cut(s) 15
Bsp1720I GCTNAGC 1 cut(s) 77
Bsp68I TCGCGA 1 cut(s) 20
BspCNI CTCAG 2 cut(s) 69, 211
BspFNI CGCG 1 cut(s) 20
BspPI GGATC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 115
BssMI GATC 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 140, 182
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 3 cut(s) 77, 198, 222
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 17, 132
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 108
BtuMI TCGCGA 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 117
CseI GACGC 1 cut(s) 45
CviAII CATG 1 cut(s) 217
CviJI RGCY 3 cut(s) 76, 115, 146
CviKI_1 RGCY 3 cut(s) 76, 115, 146
DdeI CTNAG 3 cut(s) 77, 198, 222
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
FaeI CATG 1 cut(s) 220
FaiI YATR 4 cut(s) 29, 153, 218, 229
FatI CATG 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 1 cut(s) 84
GluI GCNGC 1 cut(s) 74
HgaI GACGC 1 cut(s) 45
Hin1II CATG 1 cut(s) 220
HinfI GANTC 3 cut(s) 97, 203, 212
Hpy188I TCNGA 2 cut(s) 130, 178
Hpy188III TCNNGA 2 cut(s) 19, 200
Hpy99I CGWCG 1 cut(s) 25
HpyCH4III ACNGT 2 cut(s) 140, 182
HpyCH4V TGCA 2 cut(s) 135, 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 132
HpyF3I CTNAG 3 cut(s) 77, 198, 222
Hsp92II CATG 1 cut(s) 220
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 2 cut(s) 96, 185
Lsp1109I GCAGC 1 cut(s) 85
MaeI CTAG 1 cut(s) 84
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MhlI GDGCHC 2 cut(s) 83, 128
MluCI AATT 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 76
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 17, 132
NdeII GATC 1 cut(s) 15
NlaIII CATG 1 cut(s) 220
NruI TCGCGA 1 cut(s) 20
PfeI GAWTC 3 cut(s) 97, 203, 212
PflFI GACNNNGTC 1 cut(s) 152
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 1 cut(s) 75
PsyI GACNNNGTC 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 76
RruI TCGCGA 1 cut(s) 20
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 1 cut(s) 15
SduI GDGCHC 2 cut(s) 83, 128
SetI ASST 3 cut(s) 55, 78, 228
SgeI CNNG 8 cut(s) 24, 31, 96, 113, 123, 128, 176, 212
Sse9I AATT 1 cut(s) 167
SspMI CTAG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 140, 182
TasI AATT 1 cut(s) 167
TfiI GAWTC 3 cut(s) 97, 203, 212
TscAI CASTG 1 cut(s) 115
TseI GCWGC 1 cut(s) 73
TspRI CASTG 1 cut(s) 115
Tth111I GACNNNGTC 1 cut(s) 152
Van91I CCANNNNNTGG 1 cut(s) 169
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.