MD17G1177800.v1.1

15 kDa selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014141
Physical Location & Seq
Reverse (-)
20319705 .. 20322801
3097 bp
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UTR
Exon/CDS
Intron
MD17G1177800.v1.1.491

Sequence Viewer

Length: 477 bp
ATGGGAGCGTTGATGGTGGCTATGTTGGTGGTGCTCGCGGTGGCAGTAGCTTCCGGTGCATCGAAAGAGCAAATGAGCACAAGGGAATGCGAGAATCTTGGTTTCACAGGTCTCGCTTTATGCTCTGATTGTAACAGTTTGGCTGAGTATGTCAAAGATCAAGAATTGGTATCCGACTGTATGAAATGTTGCACCGGGGATTCTGATGATTCAATGACAAAGATCACGTATTCTGGTGCTATACTGGAAGTCTGCATGAGGAAACTGGTTTTCTATCCCGAAATTGTTGGCTTTATTGAAGAAGAGAAGGATTGGTTCCCTTCAGTCAAAGTCCAATACATTTTCAATTCTCCACCAAAGTTGATCTTGCTAGATGATGCAGGCGAACATAAGGAAACAATAAGAATCGACAATTGGAAGCGTGAACATATCTTGCAGTTTCTGCAAGGGAAGGTAAAGCCTGCTTCTGCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sep15_SelM

Protein Analysis

159

Amino Acids

17.55

Weight (kDa)

4.85

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sep15_SelM PF08806 79 - 152 2.1e-29 Sep15/SelM redox domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05720
fragaria_vesca FvH4_4g10450 FvH4_4g10450
malus_domestica MD04G1049100.v1.1 MD17G1177800.v1.1
prunus_persica Prupe.1G207200_v2.0.a1
pyrus_communis pycom04g04330
rosa_chinensis RchiOBHm_Chr4g0405941
rosa_laevigata RLG00000008809
rosa_multiflora Rmu_ssc0000087.1_g000072
rosa_roxburghii Rroxscaffold_5G00350680
rosa_rugosa Rorug04G0064200
rosa_samantha Rh4AG135000 Rh4BG130600 Rh4CG142400 Rh4DG129300
rosa_wichuraiana Rw4G010990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AciI CCGC 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 306
AgsI TTSAA 3 cut(s) 213, 299, 346
AjuI GAANNNNNNNTTGG 2 cut(s) 397, 429
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw21I GWGCWC 2 cut(s) 36, 80
Alw26I GTCTC 1 cut(s) 116
AlwNI CAGNNNCTG 1 cut(s) 442
AsuC2I CCSGG 1 cut(s) 196
Bbv12I GWGCWC 2 cut(s) 36, 80
BccI CCATC 1 cut(s) 7
BciVI GTATCC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 371
BfuI GTATCC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 2 cut(s) 68, 367
BpuMI CCSGG 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 249, 270
BseDI CCNNGG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 249, 270
Bsh1236I CGCG 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 36, 80
BsiSI CCGG 2 cut(s) 54, 195
BsmAI GTCTC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 36, 80
Bsp143I GATC 3 cut(s) 157, 222, 363
BspACI CCGC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 136
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 116
BsrI ACTGG 2 cut(s) 249, 270
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 3 cut(s) 157, 222, 363
Bst4CI ACNGT 2 cut(s) 137, 179
Bst6I CTCTTC 1 cut(s) 297
BstAPI GCANNNNNTGC 1 cut(s) 442
BstBAI YACGTR 1 cut(s) 228
BstC8I GCNNGC 3 cut(s) 36, 382, 462
BstDEI CTNAG 1 cut(s) 144
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 3 cut(s) 160, 225, 366
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 3 cut(s) 157, 222, 363
BstMWI GCNNNNNNNGC 2 cut(s) 56, 442
BstSCI CCNGG 1 cut(s) 194
BstUI CGCG 1 cut(s) 38
BsuI GTATCC 1 cut(s) 181
Cac8I GCNNGC 3 cut(s) 36, 382, 462
CaiI CAGNNNCTG 1 cut(s) 442
CspCI CAANNNNNGTGG 2 cut(s) 342, 377
CviAII CATG 1 cut(s) 256
CviJI RGCY 5 cut(s) 20, 50, 143, 291, 460
CviKI_1 RGCY 5 cut(s) 20, 50, 143, 291, 460
DdeI CTNAG 1 cut(s) 144
DpnI GATC 3 cut(s) 159, 224, 365
DpnII GATC 3 cut(s) 157, 222, 363
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 306
FaeI CATG 1 cut(s) 259
FaiI YATR 8 cut(s) 23, 121, 150, 182, 242, 257, 390, 429
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FatI CATG 1 cut(s) 255
FspBI CTAG 1 cut(s) 371
HapII CCGG 2 cut(s) 54, 195
Hin1II CATG 1 cut(s) 259
HinfI GANTC 4 cut(s) 94, 200, 209, 405
HpaII CCGG 2 cut(s) 54, 195
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 4 cut(s) 127, 175, 205, 476
Hpy188III TCNNGA 2 cut(s) 161, 278
Hpy8I GTNNAC 1 cut(s) 425
HpyAV CCTTC 3 cut(s) 301, 330, 445
HpyCH4III ACNGT 2 cut(s) 137, 179
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 7 cut(s) 59, 192, 255, 380, 436, 445, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 442
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 1 cut(s) 259
Kzo9I GATC 3 cut(s) 157, 222, 363
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 7 cut(s) 67, 93, 208, 219, 230, 251, 366
LweI GCATC 2 cut(s) 68, 367
MaeI CTAG 1 cut(s) 371
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 131
MalI GATC 3 cut(s) 159, 224, 365
MboI GATC 3 cut(s) 157, 222, 363
MboII GAAGA 2 cut(s) 311, 314
MfeI CAATTG 1 cut(s) 412
MhlI GDGCHC 2 cut(s) 36, 80
MluCI AATT 4 cut(s) 164, 282, 346, 412
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 1 cut(s) 252
MspI CCGG 2 cut(s) 54, 195
MspR9I CCNGG 1 cut(s) 196
MunI CAATTG 1 cut(s) 412
Mva1269I GAATGC 1 cut(s) 92
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 56, 442
NciI CCSGG 1 cut(s) 196
NdeII GATC 3 cut(s) 157, 222, 363
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 1 cut(s) 317
PctI GAATGC 1 cut(s) 92
PfeI GAWTC 4 cut(s) 94, 200, 209, 405
Ppu21I YACGTR 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 317
PstNI CAGNNNCTG 1 cut(s) 442
Sau3AI GATC 3 cut(s) 157, 222, 363
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 2 cut(s) 36, 80
SetI ASST 4 cut(s) 52, 112, 230, 456
SfaNI GCATC 2 cut(s) 68, 367
Sse9I AATT 4 cut(s) 164, 282, 346, 412
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 137, 179
TaiI ACGT 1 cut(s) 230
TaqI TCGA 2 cut(s) 62, 408
TasI AATT 4 cut(s) 164, 282, 346, 412
TfiI GAWTC 4 cut(s) 94, 200, 209, 405
TspDTI ATGAA 1 cut(s) 197
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.