FvH4_4g10450

15 kDa selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014141
Physical Location & Seq
Forward (+)
14147618 .. 14151135
3518 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10450.t2

Sequence Viewer

Length: 483 bp
ATGGGGGGAGCGTGGATCGCAACGGCTTTGGTTGTGGTGGTGTATTGGGTAGGTTTATCATCAGCATCGGTAGAGCGGCTGAGCACTAGGGAATGTGAGAATCTTGGTTTCACTGGGCTTGCTTTGTGCTCTGATTGCAACAGTTTGTCTGACTACGTCAAAGACCAAGAATTGGTATCAGACTGTAAAAAGTGTTGCACTGAGGATTCCAATGATTCCATGACGAAGATTACTTATTCTGGTGCAATACTCGAGGTCTGCATGAGGAAACTGGTATTTTATCCAGAAATTGTTGCCTTCATTGAAGAAGAGAAGGATCGGTTTCCATCAGTTAAAGTTCAATACAGTTTCAATTCTCCTCCCAAGTTGATCATGGCAGATGATGCAGGCGAACATAAGGAAACAATAAGAATCGACAACTGGAAGCGGGAACATATACTTCAGTTTCTGCAAGGGAAAGTGAAGCCTACATCAGCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sep15_SelM

Protein Analysis

161

Amino Acids

17.94

Weight (kDa)

5.1

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sep15_SelM PF08806 82 - 155 1.2e-28 Sep15/SelM redox domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05720
fragaria_vesca FvH4_4g10450 FvH4_4g10450
malus_domestica MD04G1049100.v1.1 MD17G1177800.v1.1
prunus_persica Prupe.1G207200_v2.0.a1
pyrus_communis pycom04g04330
rosa_chinensis RchiOBHm_Chr4g0405941
rosa_laevigata RLG00000008809
rosa_multiflora Rmu_ssc0000087.1_g000072
rosa_roxburghii Rroxscaffold_5G00350680
rosa_rugosa Rorug04G0064200
rosa_samantha Rh4AG135000 Rh4BG130600 Rh4CG142400 Rh4DG129300
rosa_wichuraiana Rw4G010990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 172
AccBSI CCGCTC 1 cut(s) 76
AciI CCGC 2 cut(s) 76, 427
AclWI GGATC 2 cut(s) 23, 324
AcuI CTGAAG 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 3 cut(s) 305, 341, 352
Alw21I GWGCWC 2 cut(s) 86, 131
AlwI GGATC 2 cut(s) 23, 324
AlwNI CAGNNNCTG 1 cut(s) 448
Ama87I CYCGRG 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 251
Bbv12I GWGCWC 2 cut(s) 86, 131
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 39
BclI TGATCA 1 cut(s) 369
BfaI CTAG 1 cut(s) 87
BisI GCNGC 1 cut(s) 77
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 78
BmeT110I CYCGRG 1 cut(s) 251
BmrI ACTGGG 1 cut(s) 123
BmsI GCATC 2 cut(s) 74, 373
BmuI ACTGGG 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 3 cut(s) 118, 276, 425
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 71, 192
BseNI ACTGG 3 cut(s) 118, 276, 425
BseRI GAGGAG 1 cut(s) 348
BsiHKAI GWGCWC 2 cut(s) 86, 131
BsiHKCI CYCGRG 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 86, 131
Bsp143I GATC 3 cut(s) 15, 316, 369
Bsp1720I GCTNAGC 1 cut(s) 80
BspACI CCGC 2 cut(s) 76, 427
BspCNI CTCAG 2 cut(s) 72, 193
BspPI GGATC 2 cut(s) 23, 324
BsrBI CCGCTC 1 cut(s) 76
BsrI ACTGG 3 cut(s) 118, 276, 425
BssMI GATC 3 cut(s) 15, 316, 369
Bst4CI ACNGT 3 cut(s) 143, 185, 347
Bst6I CTCTTC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 120, 388
BstDEI CTNAG 2 cut(s) 80, 201
BstKTI GATC 3 cut(s) 18, 319, 372
BstMBI GATC 3 cut(s) 15, 316, 369
BstMWI GCNNNNNNNGC 3 cut(s) 17, 135, 383
BtsIMutI CAGTG 2 cut(s) 111, 198
Cac8I GCNNGC 2 cut(s) 120, 388
CaiI CAGNNNCTG 1 cut(s) 448
CviAII CATG 3 cut(s) 220, 262, 373
CviJI RGCY 4 cut(s) 26, 79, 118, 466
CviKI_1 RGCY 4 cut(s) 26, 79, 118, 466
DdeI CTNAG 2 cut(s) 80, 201
DpnI GATC 3 cut(s) 17, 318, 371
DpnII GATC 3 cut(s) 15, 316, 369
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 251
FaeI CATG 3 cut(s) 223, 265, 376
FaiI YATR 6 cut(s) 221, 263, 374, 396, 435, 437
FatI CATG 3 cut(s) 219, 261, 372
FauI CCCGC 1 cut(s) 420
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 1 cut(s) 87
GluI GCNGC 1 cut(s) 77
Hin1II CATG 3 cut(s) 223, 265, 376
HinfI GANTC 4 cut(s) 100, 206, 215, 411
Hpy188I TCNGA 4 cut(s) 133, 151, 181, 482
Hpy188III TCNNGA 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 307, 307
HpyCH4III ACNGT 3 cut(s) 143, 185, 347
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 6 cut(s) 138, 198, 245, 261, 386, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 135, 383
HpyF3I CTNAG 2 cut(s) 80, 201
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 3 cut(s) 223, 265, 376
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 3 cut(s) 15, 316, 369
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 6 cut(s) 99, 225, 257, 297, 372, 406
LweI GCATC 2 cut(s) 74, 373
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 156
MalI GATC 3 cut(s) 17, 318, 371
MbiI CCGCTC 1 cut(s) 76
MboI GATC 3 cut(s) 15, 316, 369
MboII GAAGA 3 cut(s) 238, 317, 320
MhlI GDGCHC 2 cut(s) 86, 131
MluCI AATT 3 cut(s) 170, 288, 352
MnlI CCTC 4 cut(s) 196, 247, 258, 369
MseI TTAA 1 cut(s) 333
MwoI GCNNNNNNNGC 3 cut(s) 17, 135, 383
NdeII GATC 3 cut(s) 15, 316, 369
NlaIII CATG 3 cut(s) 223, 265, 376
PaeR7I CTCGAG 1 cut(s) 251
PfeI GAWTC 4 cut(s) 100, 206, 215, 411
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 1 cut(s) 78
PspXI VCTCGAGB 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 3 cut(s) 15, 316, 369
SduI GDGCHC 2 cut(s) 86, 131
SetI ASST 3 cut(s) 55, 159, 258
SfaNI GCATC 2 cut(s) 74, 373
Sfr274I CTCGAG 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 3 cut(s) 170, 288, 352
SsiI CCGC 2 cut(s) 76, 427
SspMI CTAG 1 cut(s) 87
TaaI ACNGT 3 cut(s) 143, 185, 347
TaiI ACGT 1 cut(s) 159
TaqI TCGA 2 cut(s) 252, 414
TasI AATT 3 cut(s) 170, 288, 352
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 4 cut(s) 100, 206, 215, 411
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 118, 205
TspDTI ATGAA 1 cut(s) 289
TspRI CASTG 2 cut(s) 118, 205
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XhoI CTCGAG 1 cut(s) 251
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.