Prupe.1G207200_v2.0.a1

15 kDa selenoprotein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
21090420 .. 21093881
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G207200.1

Sequence Viewer

Length: 474 bp
ATGGGAGCCTTGATCGCTATGTTGGTGGTGTTGGGGGTGGTAGTACCTTTAGGCGCATCGAAAGAGCAGCTGAGCACTAGGGAATGTGAGAATCTTGGCTTCACAGGGCTTGCTTTGTGCTCGGATTGTAACAGTTTGGCTGAGTACGTTAAAGACCAAGAGTTGGTATCGGACTGTAGGAAGTGTTGCACTGAGGATTCTGATGATTCCATCAGCAAGGTTACCTATTCTGGTGCCATTCTGGAGGTCTGCATGAGGAAACTGGTATTCTATCCGGAAATTGTTGGCTTCATTGAAGAAGAGAAGGATCGGTTTCCTTCGGTCAAAGTTCAGTACATTTTCAATTCTCCACCAAAGTTGATCTTGCTAGATGATGCAGATGAACATAAGGAAACAATAAGGATTGACAATTGGAAGCGTGAACATATACTGCAGTTTCTGCAAGGGAAGGTAAAGCGTGCTTCAGCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

158

Amino Acids

17.62

Weight (kDa)

5.0

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05720
fragaria_vesca FvH4_4g10450 FvH4_4g10450
malus_domestica MD04G1049100.v1.1 MD17G1177800.v1.1
prunus_persica Prupe.1G207200_v2.0.a1
pyrus_communis pycom04g04330
rosa_chinensis RchiOBHm_Chr4g0405941
rosa_laevigata RLG00000008809
rosa_multiflora Rmu_ssc0000087.1_g000072
rosa_roxburghii Rroxscaffold_5G00350680
rosa_rugosa Rorug04G0064200
rosa_samantha Rh4AG135000 Rh4BG130600 Rh4CG142400 Rh4DG129300
rosa_wichuraiana Rw4G010990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AccB7I CCANNNNNTGG 1 cut(s) 163
AccIII TCCGGA 1 cut(s) 274
AclWI GGATC 1 cut(s) 315
AcuI CTGAAG 1 cut(s) 447
AfaI GTAC 3 cut(s) 45, 146, 335
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 2 cut(s) 296, 343
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw21I GWGCWC 2 cut(s) 77, 122
AlwI GGATC 1 cut(s) 315
AlwNI CAGNNNCTG 1 cut(s) 439
Aor13HI TCCGGA 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 67
AspLEI GCGC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 233
Bbv12I GWGCWC 2 cut(s) 77, 122
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 218
BfaI CTAG 2 cut(s) 78, 368
BfmI CTRYAG 2 cut(s) 175, 431
BisI GCNGC 1 cut(s) 68
BlpI GCTNAGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 69
BmiI GGNNCC 2 cut(s) 7, 235
BmsI GCATC 2 cut(s) 65, 364
BpmI CTGGAG 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 267
BseAI TCCGGA 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 3 cut(s) 62, 132, 183
BseNI ACTGG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 233
BsiHKAI GWGCWC 2 cut(s) 77, 122
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 77, 122
Bsp13I TCCGGA 1 cut(s) 274
Bsp143I GATC 3 cut(s) 12, 307, 360
Bsp1720I GCTNAGC 1 cut(s) 71
BspCNI CTCAG 3 cut(s) 63, 133, 184
BspEI TCCGGA 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 7, 235
BspMAI CTGCAG 1 cut(s) 435
BspPI GGATC 1 cut(s) 315
BspT107I GGYRCC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 267
BssMI GATC 3 cut(s) 12, 307, 360
Bst4CI ACNGT 2 cut(s) 134, 176
Bst6I CTCTTC 1 cut(s) 294
BstAPI GCANNNNNTGC 1 cut(s) 439
BstC8I GCNNGC 2 cut(s) 111, 459
BstDEI CTNAG 3 cut(s) 71, 141, 192
BstEII GGTNACC 1 cut(s) 220
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 3 cut(s) 15, 310, 363
BstMBI GATC 3 cut(s) 12, 307, 360
BstMWI GCNNNNNNNGC 2 cut(s) 14, 439
BstPI GGTNACC 1 cut(s) 220
BstSFI CTRYAG 2 cut(s) 175, 431
BstV1I GCAGC 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 111, 459
CaiI CAGNNNCTG 1 cut(s) 439
CfoI GCGC 1 cut(s) 56
Csp6I GTAC 3 cut(s) 44, 145, 334
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 1 cut(s) 253
CviJI RGCY 6 cut(s) 8, 70, 99, 109, 140, 288
CviKI_1 RGCY 6 cut(s) 8, 70, 99, 109, 140, 288
CviQI GTAC 3 cut(s) 44, 145, 334
DdeI CTNAG 3 cut(s) 71, 141, 192
DpnI GATC 3 cut(s) 14, 309, 362
DpnII GATC 3 cut(s) 12, 307, 360
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 447
Eco91I GGTNACC 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 220
FaeI CATG 1 cut(s) 256
FaiI YATR 5 cut(s) 20, 254, 387, 426, 428
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FatI CATG 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 2 cut(s) 78, 368
GlaI GCGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 263
HapII CCGG 1 cut(s) 275
HhaI GCGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 3 cut(s) 91, 197, 206
HpaII CCGG 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 4 cut(s) 124, 172, 202, 473
Hpy188III TCNNGA 2 cut(s) 242, 275
Hpy8I GTNNAC 1 cut(s) 422
HpyAV CCTTC 3 cut(s) 298, 327, 442
HpyCH4III ACNGT 2 cut(s) 134, 176
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 5 cut(s) 189, 252, 377, 433, 442
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 439
HpyF3I CTNAG 3 cut(s) 71, 141, 192
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 1 cut(s) 54
Kpn2I TCCGGA 1 cut(s) 274
Kzo9I GATC 3 cut(s) 12, 307, 360
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 5 cut(s) 90, 216, 227, 248, 288
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 2 cut(s) 65, 364
MaeI CTAG 2 cut(s) 78, 368
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 128, 220
MalI GATC 3 cut(s) 14, 309, 362
MboI GATC 3 cut(s) 12, 307, 360
MboII GAAGA 2 cut(s) 308, 311
MfeI CAATTG 1 cut(s) 409
MhlI GDGCHC 2 cut(s) 77, 122
MluCI AATT 3 cut(s) 279, 343, 409
MnlI CCTC 3 cut(s) 187, 238, 249
MroI TCCGGA 1 cut(s) 274
MseI TTAA 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 70
MspI CCGG 1 cut(s) 275
MunI CAATTG 1 cut(s) 409
MwoI GCNNNNNNNGC 2 cut(s) 14, 439
NdeII GATC 3 cut(s) 12, 307, 360
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 2 cut(s) 7, 235
PfeI GAWTC 3 cut(s) 91, 197, 206
PflMI CCANNNNNTGG 1 cut(s) 163
PkrI GCNGC 1 cut(s) 69
PspEI GGTNACC 1 cut(s) 220
PspN4I GGNNCC 2 cut(s) 7, 235
PstI CTGCAG 1 cut(s) 435
PstNI CAGNNNCTG 1 cut(s) 439
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 3 cut(s) 45, 146, 335
RsaNI GTAC 3 cut(s) 44, 145, 334
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 3 cut(s) 12, 307, 360
SduI GDGCHC 2 cut(s) 77, 122
SetI ASST 7 cut(s) 49, 72, 150, 222, 227, 249, 453
SfaNI GCATC 2 cut(s) 65, 364
SfcI CTRYAG 2 cut(s) 175, 431
Sse9I AATT 3 cut(s) 279, 343, 409
SspMI CTAG 2 cut(s) 78, 368
TaaI ACNGT 2 cut(s) 134, 176
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 59
TaqII GACCGA 1 cut(s) 310
TasI AATT 3 cut(s) 279, 343, 409
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 3 cut(s) 91, 197, 206
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 196
TseI GCWGC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 280, 396
TspRI CASTG 1 cut(s) 196
Van91I CCANNNNNTGG 1 cut(s) 163
XspI CTAG 2 cut(s) 78, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.