Rroxscaffold_5G00350680

15 kDa selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014141
Physical Location & Seq
Forward (+)
25017851 .. 25021295
3445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350680.1

Sequence Viewer

Length: 483 bp
ATGGGGGGAGCGTGGATCGCGACGACTATGGTAGTGGTGGTGTGTTTGGTAGGTGCGTCATCATCGGTAGAGCAGCTGAGCACTAGAGAATGTGAGAATCTTGGTTTCACTGGGCTTGCTTTGTGCTCTGATTGCAACAGTTTGGCTGACTATGTCAAAGACCAAGCAGAATTGGTATCAGACTGTAAGAAGTGTTGCACTGAGGATTCCAATGATTCCATGACAAAGATTACTTATTCTGGTGCGATACTTGAGGTCTGCATGAGGAAACTGGTATTTTATCCAGAAATTGTTGGCTTCATTGAAGAAGAGAAGGATCGGTTTCCATCAGTTAAAGTTCAATACGTTTTCAATTCTCCTCCGAAGTTGATCATGCTAGATGATGCAGGCGAACATAAGGAAACAGTAAGAATCGACAACTGGAAGCGGGAACATATACTTCAGTTTCTGCAAGGGAAGGTGAAGCCTACATCAGCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sep15_SelM

Protein Analysis

160

Amino Acids

17.8

Weight (kDa)

4.96

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sep15_SelM PF08806 81 - 154 1.2e-28 Sep15/SelM redox domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05720
fragaria_vesca FvH4_4g10450 FvH4_4g10450
malus_domestica MD04G1049100.v1.1 MD17G1177800.v1.1
prunus_persica Prupe.1G207200_v2.0.a1
pyrus_communis pycom04g04330
rosa_chinensis RchiOBHm_Chr4g0405941
rosa_laevigata RLG00000008809
rosa_multiflora Rmu_ssc0000087.1_g000072
rosa_roxburghii Rroxscaffold_5G00350680
rosa_rugosa Rorug04G0064200
rosa_samantha Rh4AG135000 Rh4BG130600 Rh4CG142400 Rh4DG129300
rosa_wichuraiana Rw4G010990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 20
AciI CCGC 1 cut(s) 427
AclWI GGATC 2 cut(s) 23, 324
AcuI CTGAAG 1 cut(s) 425
AgsI TTSAA 3 cut(s) 305, 341, 352
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw21I GWGCWC 2 cut(s) 83, 128
AlwI GGATC 2 cut(s) 23, 324
AlwNI CAGNNNCTG 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 472
Bbv12I GWGCWC 2 cut(s) 83, 128
BbvI GCAGC 1 cut(s) 85
BccI CCATC 1 cut(s) 334
BclI TGATCA 1 cut(s) 369
BfaI CTAG 2 cut(s) 84, 377
BisI GCNGC 1 cut(s) 74
BlpI GCTNAGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 373
BmuI ACTGGG 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 272
Bse1I ACTGG 3 cut(s) 115, 276, 425
BseMII CTCAG 2 cut(s) 68, 192
BseNI ACTGG 3 cut(s) 115, 276, 425
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 20
BsiHKAI GWGCWC 2 cut(s) 83, 128
Bsp1286I GDGCHC 2 cut(s) 83, 128
Bsp143I GATC 3 cut(s) 15, 316, 369
Bsp1720I GCTNAGC 1 cut(s) 77
Bsp68I TCGCGA 1 cut(s) 20
BspACI CCGC 1 cut(s) 427
BspCNI CTCAG 2 cut(s) 69, 193
BspFNI CGCG 1 cut(s) 20
BspPI GGATC 2 cut(s) 23, 324
BsrI ACTGG 3 cut(s) 115, 276, 425
BssMI GATC 3 cut(s) 15, 316, 369
Bst4CI ACNGT 3 cut(s) 140, 185, 406
Bst6I CTCTTC 1 cut(s) 303
BstC8I GCNNGC 2 cut(s) 117, 388
BstDEI CTNAG 2 cut(s) 77, 201
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 3 cut(s) 18, 319, 372
BstMBI GATC 3 cut(s) 15, 316, 369
BstMWI GCNNNNNNNGC 2 cut(s) 17, 132
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 85
BtsIMutI CAGTG 2 cut(s) 108, 198
BtuMI TCGCGA 1 cut(s) 20
Cac8I GCNNGC 2 cut(s) 117, 388
CaiI CAGNNNCTG 1 cut(s) 448
CseI GACGC 1 cut(s) 45
CviAII CATG 3 cut(s) 220, 262, 373
CviJI RGCY 5 cut(s) 76, 115, 146, 297, 466
CviKI_1 RGCY 5 cut(s) 76, 115, 146, 297, 466
DdeI CTNAG 2 cut(s) 77, 201
DpnI GATC 3 cut(s) 17, 318, 371
DpnII GATC 3 cut(s) 15, 316, 369
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 425
FaeI CATG 3 cut(s) 223, 265, 376
FaiI YATR 8 cut(s) 29, 153, 221, 263, 374, 396, 435, 437
FatI CATG 3 cut(s) 219, 261, 372
FauI CCCGC 1 cut(s) 420
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 2 cut(s) 84, 377
GluI GCNGC 1 cut(s) 74
HgaI GACGC 1 cut(s) 45
Hin1II CATG 3 cut(s) 223, 265, 376
HinfI GANTC 4 cut(s) 97, 206, 215, 411
HphI GGTGA 1 cut(s) 472
Hpy188I TCNGA 4 cut(s) 130, 181, 363, 482
Hpy188III TCNNGA 2 cut(s) 19, 284
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 307, 451
HpyCH4III ACNGT 3 cut(s) 140, 185, 406
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 5 cut(s) 135, 198, 261, 386, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 132
HpyF3I CTNAG 2 cut(s) 77, 201
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 3 cut(s) 223, 265, 376
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 3 cut(s) 15, 316, 369
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 6 cut(s) 96, 225, 257, 297, 372, 406
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 373
MaeI CTAG 2 cut(s) 84, 377
MaeII ACGT 1 cut(s) 345
MalI GATC 3 cut(s) 17, 318, 371
MboI GATC 3 cut(s) 15, 316, 369
MboII GAAGA 2 cut(s) 317, 320
MhlI GDGCHC 2 cut(s) 83, 128
MluCI AATT 3 cut(s) 170, 288, 352
MnlI CCTC 4 cut(s) 196, 247, 258, 369
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 76
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 17, 132
NdeII GATC 3 cut(s) 15, 316, 369
NlaIII CATG 3 cut(s) 223, 265, 376
NruI TCGCGA 1 cut(s) 20
PfeI GAWTC 4 cut(s) 97, 206, 215, 411
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 75
PstNI CAGNNNCTG 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 76
RruI TCGCGA 1 cut(s) 20
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 3 cut(s) 15, 316, 369
SduI GDGCHC 2 cut(s) 83, 128
SetI ASST 5 cut(s) 55, 78, 258, 348, 462
SfaNI GCATC 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 3 cut(s) 170, 288, 352
SsiI CCGC 1 cut(s) 427
SspMI CTAG 2 cut(s) 84, 377
TaaI ACNGT 3 cut(s) 140, 185, 406
TaiI ACGT 1 cut(s) 348
TaqI TCGA 1 cut(s) 414
TasI AATT 3 cut(s) 170, 288, 352
TfiI GAWTC 4 cut(s) 97, 206, 215, 411
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 115, 205
TseI GCWGC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 289
TspRI CASTG 2 cut(s) 115, 205
Tth111I GACNNNGTC 1 cut(s) 152
XspI CTAG 2 cut(s) 84, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.