Rh4BG130600

15 kDa selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014141
Physical Location & Seq
Forward (+)
21982931 .. 21988163
5233 bp
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UTR
Exon/CDS
Intron
Rh4BG130600.1

Sequence Viewer

Length: 414 bp
ATGGGGAAGGGAGCGTGGATCGCAACGACTATGGTAGTGGTGGTGTGTTTGGTAGGTGCATCATCATCGGTAGAGCAGCTGAGCACTAGAGAATGTGAGAATCTTGGTTTCACTGGGCTTGCTTTGTGCTCTGATTGCAACAGTTTGGCTGACTATGTCAAAGACCAAGAATTGGTATCAGACTGTAAGAAGTGTTGCACTGAGGATTCCAATGATTCCATGACAAAGATTACTTATTCTGGTGCGATACTTGAGGTCTGCATGAGGAAACTGGTATTTTATCCAGAAATTGTTGGCTTCATTGAAGAAGAGAAGGATCGGTTTCCATCAGTTAAAGTTCAATACGTTTTCAATTCTCCTCCGAAGTTGATCATGCTAGATGATGCAGGCGAGCATAAGGAAACAGTAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sep15_SelM

Protein Analysis

137

Amino Acids

15.15

Weight (kDa)

4.7

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sep15_SelM PF08806 81 - 136 6.7e-20 Sep15/SelM redox domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05720
fragaria_vesca FvH4_4g10450 FvH4_4g10450
malus_domestica MD04G1049100.v1.1 MD17G1177800.v1.1
prunus_persica Prupe.1G207200_v2.0.a1
pyrus_communis pycom04g04330
rosa_chinensis RchiOBHm_Chr4g0405941
rosa_laevigata RLG00000008809
rosa_multiflora Rmu_ssc0000087.1_g000072
rosa_roxburghii Rroxscaffold_5G00350680
rosa_rugosa Rorug04G0064200
rosa_samantha Rh4AG135000 Rh4BG130600 Rh4CG142400 Rh4DG129300
rosa_wichuraiana Rw4G010990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 172
AclWI GGATC 2 cut(s) 26, 324
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 3 cut(s) 305, 341, 352
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 2 cut(s) 86, 131
AlwI GGATC 2 cut(s) 26, 324
ApeKI GCWGC 1 cut(s) 76
Bbv12I GWGCWC 2 cut(s) 86, 131
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 334
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BclI TGATCA 1 cut(s) 369
BfaI CTAG 2 cut(s) 87, 377
BisI GCNGC 1 cut(s) 77
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 78
BmrI ACTGGG 1 cut(s) 123
BmsI GCATC 2 cut(s) 68, 373
BmuI ACTGGG 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 2 cut(s) 118, 276
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 71, 192
BseNI ACTGG 2 cut(s) 118, 276
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 88
BsiHKAI GWGCWC 2 cut(s) 86, 131
BslI CCNNNNNNNGG 1 cut(s) 172
Bsp1286I GDGCHC 2 cut(s) 86, 131
Bsp143I GATC 3 cut(s) 18, 316, 369
Bsp1720I GCTNAGC 1 cut(s) 80
BspCNI CTCAG 2 cut(s) 72, 193
BspPI GGATC 2 cut(s) 26, 324
BsrI ACTGG 2 cut(s) 118, 276
BssMI GATC 3 cut(s) 18, 316, 369
Bst4CI ACNGT 3 cut(s) 143, 185, 406
Bst6I CTCTTC 1 cut(s) 303
BstC8I GCNNGC 3 cut(s) 120, 388, 392
BstDEI CTNAG 2 cut(s) 80, 201
BstKTI GATC 3 cut(s) 21, 319, 372
BstMBI GATC 3 cut(s) 18, 316, 369
BstMWI GCNNNNNNNGC 2 cut(s) 20, 135
BstV1I GCAGC 1 cut(s) 88
BtsIMutI CAGTG 2 cut(s) 111, 198
Cac8I GCNNGC 3 cut(s) 120, 388, 392
CviAII CATG 3 cut(s) 220, 262, 373
CviJI RGCY 4 cut(s) 79, 118, 149, 297
CviKI_1 RGCY 4 cut(s) 79, 118, 149, 297
DdeI CTNAG 2 cut(s) 80, 201
DpnI GATC 3 cut(s) 20, 318, 371
DpnII GATC 3 cut(s) 18, 316, 369
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
FaeI CATG 3 cut(s) 223, 265, 376
FaiI YATR 6 cut(s) 32, 156, 221, 263, 374, 396
FatI CATG 3 cut(s) 219, 261, 372
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 2 cut(s) 87, 377
GluI GCNGC 1 cut(s) 77
Hin1II CATG 3 cut(s) 223, 265, 376
HinfI GANTC 3 cut(s) 100, 206, 215
Hpy188I TCNGA 3 cut(s) 133, 181, 363
Hpy188III TCNNGA 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 3 cut(s) 143, 185, 406
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 5 cut(s) 59, 138, 198, 261, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 135
HpyF3I CTNAG 2 cut(s) 80, 201
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 3 cut(s) 223, 265, 376
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 3 cut(s) 18, 316, 369
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 5 cut(s) 99, 225, 257, 297, 372
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 2 cut(s) 68, 373
MaeI CTAG 2 cut(s) 87, 377
MaeII ACGT 1 cut(s) 345
MalI GATC 3 cut(s) 20, 318, 371
MboI GATC 3 cut(s) 18, 316, 369
MboII GAAGA 2 cut(s) 317, 320
MhlI GDGCHC 2 cut(s) 86, 131
MluCI AATT 3 cut(s) 170, 288, 352
MnlI CCTC 4 cut(s) 196, 247, 258, 369
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 79
MwoI GCNNNNNNNGC 2 cut(s) 20, 135
NdeII GATC 3 cut(s) 18, 316, 369
NlaIII CATG 3 cut(s) 223, 265, 376
PfeI GAWTC 3 cut(s) 100, 206, 215
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 1 cut(s) 78
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 79
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 3 cut(s) 18, 316, 369
SduI GDGCHC 2 cut(s) 86, 131
SetI ASST 5 cut(s) 58, 81, 258, 348, 413
SfaNI GCATC 2 cut(s) 68, 373
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 3 cut(s) 170, 288, 352
SspMI CTAG 2 cut(s) 87, 377
TaaI ACNGT 3 cut(s) 143, 185, 406
TaiI ACGT 1 cut(s) 348
TasI AATT 3 cut(s) 170, 288, 352
TfiI GAWTC 3 cut(s) 100, 206, 215
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 118, 205
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 289
TspRI CASTG 2 cut(s) 118, 205
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 172
XspI CTAG 2 cut(s) 87, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.