pycom04g04330

15 kDa selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0014141
Physical Location & Seq
Reverse (-)
3888556 .. 3889048
493 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04330.1

Sequence Viewer

Length: 381 bp
ATGTCAAAAATAAGGCCCAGACCAAGAGCAAGACCAGCGTTTTGTTTTTGTTTCGAGTCCTGGGAGGGGAGACTGAAACTCGTGAACTCGGAAGGAAGAGAGATGGGAGCGTTGGTGGCGGCTATGTTGGTGGTGCTCGCGGTGGCAGTAGCTTCCGGTTCATCGAAGGAGCAGCTAAGCACAAGGGAATGCGAGAATCTTGGCTTCACAGGTCTCGCTTTGTGCTCTGATTGTAACAGTTTGGCTGAGTATGTTAAAGATCAAGGTTACCCATCCAATCCAATCTCCTTCCATTCTTTTTTTTATTTTTTATTTTTTTGCAGTATTAATTTCTATAGCTTGGATCTAACGAAAGACGTCACAGAACCAAGCACGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sep15_SelM

Protein Analysis

127

Amino Acids

14.06

Weight (kDa)

5.8

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05720
fragaria_vesca FvH4_4g10450 FvH4_4g10450
malus_domestica MD04G1049100.v1.1 MD17G1177800.v1.1
prunus_persica Prupe.1G207200_v2.0.a1
pyrus_communis pycom04g04330
rosa_chinensis RchiOBHm_Chr4g0405941
rosa_laevigata RLG00000008809
rosa_multiflora Rmu_ssc0000087.1_g000072
rosa_roxburghii Rroxscaffold_5G00350680
rosa_rugosa Rorug04G0064200
rosa_samantha Rh4AG135000 Rh4BG130600 Rh4CG142400 Rh4DG129300
rosa_wichuraiana Rw4G010990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 360
AccII CGCG 1 cut(s) 140
AciI CCGC 2 cut(s) 119, 140
AclWI GGATC 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 357
AfiI CCNNNNNNNGG 1 cut(s) 66
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 3 cut(s) 152, 175, 339
AluI AGCT 3 cut(s) 152, 175, 339
Alw21I GWGCWC 2 cut(s) 138, 227
Alw26I GTCTC 2 cut(s) 64, 218
AlwI GGATC 1 cut(s) 351
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 172
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
AseI ATTAAT 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 15
BauI CACGAG 1 cut(s) 80
Bbv12I GWGCWC 2 cut(s) 138, 227
BbvI GCAGC 1 cut(s) 184
BccI CCATC 2 cut(s) 97, 280
BciT130I CCWGG 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 64, 218
BfmI CTRYAG 1 cut(s) 334
BisI GCNGC 2 cut(s) 120, 173
BlpI GCTNAGC 1 cut(s) 176
BlsI GCNGC 2 cut(s) 121, 174
Bme1390I CCNGG 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 61
Bpu1102I GCTNAGC 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 1 cut(s) 16
BsiHKAI GWGCWC 2 cut(s) 138, 227
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 2 cut(s) 64, 218
BsmI GAATGC 1 cut(s) 194
BsnI GGCC 1 cut(s) 16
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 138, 227
Bsp143I GATC 2 cut(s) 259, 343
Bsp1720I GCTNAGC 1 cut(s) 176
BspACI CCGC 2 cut(s) 119, 140
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 1 cut(s) 140
BspPI GGATC 1 cut(s) 351
BspTNI GGTCTC 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 2 cut(s) 259, 343
BssNI GRCGYC 1 cut(s) 357
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 176, 246
BstEII GGTNACC 1 cut(s) 266
BstF5I GGATG 1 cut(s) 272
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 2 cut(s) 262, 346
BstMAI GTCTC 2 cut(s) 64, 218
BstMBI GATC 2 cut(s) 259, 343
BstMWI GCNNNNNNNGC 2 cut(s) 35, 116
BstNI CCWGG 1 cut(s) 61
BstPI GGTNACC 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 334
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 15
CviJI RGCY 7 cut(s) 16, 122, 152, 175, 204, 245, 339
CviKI_1 RGCY 7 cut(s) 16, 122, 152, 175, 204, 245, 339
DdeI CTNAG 2 cut(s) 176, 246
DpnI GATC 2 cut(s) 261, 345
DpnII GATC 2 cut(s) 259, 343
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 218
Eco91I GGTNACC 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 59
FaiI YATR 3 cut(s) 125, 252, 336
Fnu4HI GCNGC 2 cut(s) 120, 173
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 2 cut(s) 120, 173
GluI GCNGC 2 cut(s) 120, 173
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 156
Hin1I GRCGYC 1 cut(s) 357
HinfI GANTC 2 cut(s) 56, 196
HpaII CCGG 1 cut(s) 156
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 91, 229
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 3 cut(s) 86, 160, 298
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 2 cut(s) 357, 374
HpyCH4V TGCA 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 116
HpyF3I CTNAG 2 cut(s) 176, 246
HpySE526I ACGT 2 cut(s) 357, 374
Hsp92I GRCGYC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 259, 343
LmnI GCTCC 2 cut(s) 107, 169
LpnPI CCDG 6 cut(s) 31, 46, 48, 73, 169, 195
Lsp1109I GCAGC 1 cut(s) 184
MaeII ACGT 2 cut(s) 357, 374
MaeIII GTNAC 3 cut(s) 233, 266, 358
MalI GATC 2 cut(s) 261, 345
MboI GATC 2 cut(s) 259, 343
MboII GAAGA 1 cut(s) 108
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 138, 227
MluCI AATT 1 cut(s) 328
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 1 cut(s) 58
MseI TTAA 2 cut(s) 255, 327
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 61
Mva1269I GAATGC 1 cut(s) 194
MvaI CCWGG 1 cut(s) 61
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 35, 116
NdeII GATC 2 cut(s) 259, 343
NmuCI GTSAC 1 cut(s) 358
PctI GAATGC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 121, 174
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PshBI ATTAAT 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 266
PspGI CCWGG 1 cut(s) 59
PspPI GGNCC 1 cut(s) 15
PsuI RGATCY 1 cut(s) 343
SaqAI TTAA 2 cut(s) 255, 327
SatI GCNGC 2 cut(s) 120, 173
Sau3AI GATC 2 cut(s) 259, 343
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 2 cut(s) 138, 227
SetI ASST 7 cut(s) 154, 177, 214, 268, 341, 360, 377
SfcI CTRYAG 1 cut(s) 334
Sse9I AATT 1 cut(s) 328
SsiI CCGC 2 cut(s) 119, 140
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 2 cut(s) 360, 377
TaqI TCGA 2 cut(s) 54, 164
TasI AATT 1 cut(s) 328
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 2 cut(s) 255, 327
Tru9I TTAA 2 cut(s) 255, 327
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 150
VspI ATTAAT 1 cut(s) 327
ZraI GACGTC 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.