Rh4AG135000

15 kDa selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014141
Physical Location & Seq
Forward (+)
29503536 .. 29531891
28356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG135000.1

Sequence Viewer

Length: 306 bp
ATGGGGGGAGCGTGGATCGCGACGACTATGGTAGTGGTGGTGTGTTTGGTAGGTGCGTCATCATCGGTAGAGCAGCTGAGCACTAGAGAATGTGAGAATCTTGGTTTCACTGGGCTTGCTTTGTGCTCTGATTGCAACAGTTTGGCTGACTATGTCAAAGACCAAGAATCGACAACTGGAAGCGGGAACATATACTTCAGTTTCTGCAAGGGAAGGCGTCCAAGTAAGAGTCGTAAGCATGGACCGGTTCGTATACGCTCTACATCTCTTTCAAATGGTAACAGTGTTACAATGTTTATTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sep15_SelM

Protein Analysis

101

Amino Acids

10.79

Weight (kDa)

8.35

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05720
fragaria_vesca FvH4_4g10450 FvH4_4g10450
malus_domestica MD04G1049100.v1.1 MD17G1177800.v1.1
prunus_persica Prupe.1G207200_v2.0.a1
pyrus_communis pycom04g04330
rosa_chinensis RchiOBHm_Chr4g0405941
rosa_laevigata RLG00000008809
rosa_multiflora Rmu_ssc0000087.1_g000072
rosa_roxburghii Rroxscaffold_5G00350680
rosa_rugosa Rorug04G0064200
rosa_samantha Rh4AG135000 Rh4BG130600 Rh4CG142400 Rh4DG129300
rosa_wichuraiana Rw4G010990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 253
AccII CGCG 1 cut(s) 20
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 217
AgeI ACCGGT 1 cut(s) 244
AgsI TTSAA 1 cut(s) 273
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw21I GWGCWC 2 cut(s) 83, 128
AlwI GGATC 1 cut(s) 23
AlwNI CAGNNNCTG 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 73
AsiGI ACCGGT 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 242
AvaII GGWCC 1 cut(s) 242
Bbv12I GWGCWC 2 cut(s) 83, 128
BbvI GCAGC 1 cut(s) 85
BfaI CTAG 2 cut(s) 84, 304
BisI GCNGC 1 cut(s) 74
BlpI GCTNAGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmrI ACTGGG 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 244
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 2 cut(s) 115, 181
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 115, 181
BseXI GCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 20
BshTI ACCGGT 1 cut(s) 244
BsiHKAI GWGCWC 2 cut(s) 83, 128
BsiSI CCGG 1 cut(s) 245
Bsp1286I GDGCHC 2 cut(s) 83, 128
Bsp143I GATC 1 cut(s) 15
Bsp1720I GCTNAGC 1 cut(s) 77
Bsp68I TCGCGA 1 cut(s) 20
BspACI CCGC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 1 cut(s) 20
BspPI GGATC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 2 cut(s) 115, 181
BssAI RCCGGY 1 cut(s) 244
BssMI GATC 1 cut(s) 15
BssNAI GTATAC 1 cut(s) 254
BssNI GRCGYC 1 cut(s) 217
Bst1107I GTATAC 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 140, 284
BstACI GRCGYC 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 77
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 17, 132
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 85
BstZ17I GTATAC 1 cut(s) 254
BtsIMutI CAGTG 2 cut(s) 108, 289
BtuMI TCGCGA 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 2 cut(s) 45, 206
CspAI ACCGGT 1 cut(s) 244
CviAII CATG 1 cut(s) 239
CviJI RGCY 3 cut(s) 76, 115, 146
CviKI_1 RGCY 3 cut(s) 76, 115, 146
DdeI CTNAG 1 cut(s) 77
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 181
FaeI CATG 1 cut(s) 242
FaiI YATR 6 cut(s) 29, 153, 191, 193, 240, 254
FatI CATG 1 cut(s) 238
FauI CCCGC 1 cut(s) 176
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 2 cut(s) 84, 304
GluI GCNGC 1 cut(s) 74
HapII CCGG 1 cut(s) 245
HgaI GACGC 2 cut(s) 45, 206
Hin1I GRCGYC 1 cut(s) 217
Hin1II CATG 1 cut(s) 242
HinfI GANTC 3 cut(s) 97, 167, 229
HpaII CCGG 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 254
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 2 cut(s) 140, 284
HpyCH4V TGCA 2 cut(s) 135, 207
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 132
HpyF3I CTNAG 1 cut(s) 77
Hsp92I GRCGYC 1 cut(s) 217
Hsp92II CATG 1 cut(s) 242
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 3 cut(s) 96, 162, 258
Lsp1109I GCAGC 1 cut(s) 85
MaeI CTAG 2 cut(s) 84, 304
MaeIII GTNAC 2 cut(s) 278, 286
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MhlI GDGCHC 2 cut(s) 83, 128
MlyI GAGTC 1 cut(s) 238
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 1 cut(s) 245
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 17, 132
NdeII GATC 1 cut(s) 15
NlaIII CATG 1 cut(s) 242
NruI TCGCGA 1 cut(s) 20
PfeI GAWTC 2 cut(s) 97, 167
PflFI GACNNNGTC 1 cut(s) 152
PinAI ACCGGT 1 cut(s) 244
PkrI GCNGC 1 cut(s) 75
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 204
PsyI GACNNNGTC 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 76
RruI TCGCGA 1 cut(s) 20
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 238
SduI GDGCHC 2 cut(s) 83, 128
SetI ASST 2 cut(s) 55, 78
SinI GGWCC 1 cut(s) 242
SsiI CCGC 1 cut(s) 183
SspMI CTAG 2 cut(s) 84, 304
TaaI ACNGT 2 cut(s) 140, 284
TaqI TCGA 1 cut(s) 170
TfiI GAWTC 2 cut(s) 97, 167
TscAI CASTG 2 cut(s) 115, 289
TseI GCWGC 1 cut(s) 73
TspRI CASTG 2 cut(s) 115, 289
Tth111I GACNNNGTC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 253
XspI CTAG 2 cut(s) 84, 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.