AT1G05780

Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011972
Physical Location & Seq
Forward (+)
1726558 .. 1728520
1963 bp
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UTR
Exon/CDS
Intron
AT1G05780.1

Sequence Viewer

Length: 321 bp
ATGGCTGGAGTTATGCACAAGTTCCTTATTGCGTCAATGTTCATGTGGATTCTTCCTGTTGCCATATTATACGGATTCAACCACAATTTGCTTCCTGGTTCAACGACATTGTCTCCTCATTCTCTAATTCTCTTGAGCGGATTTCTTGCGGTGGTATCAGTGAACACAGTGATCGTGTTCTACATCTGTATGGCCATGAAAGAACCTGCAGATAAACACAAACCAGACGCTGCATTTCTCGCTGAGGCCAAAGATAGTGTGAACAAATTGACAAAAGGAGCCACAAGCAGTGATGATCATGCACTCAAAAAACAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VMA21

Protein Analysis

106

Amino Acids

11.55

Weight (kDa)

7.92

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VMA21 PF09446 4 - 66 2.3e-20 VMA21-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05780 AT2G31710
fragaria_vesca FvH4_3g12930 FvH4_4g01060
malus_domestica MD05G1247100.v1.1 MD10G1227700.v1.1
prunus_persica Prupe.4G117300_v2.0.a1 Prupe.4G117300_v2.0.a1
pyrus_communis pycom05g22300 pycom10g19120
rosa_chinensis RchiOBHm_Chr5g0021041
rosa_laevigata RLG00000032578
rosa_multiflora Rmu_co8487873.1_g000001
rosa_rugosa Rorug05G0063800
rosa_samantha Rh5AG153400 Rh5BG153100 Rh5CG165900 Rh5DG152700
rosa_wichuraiana Rw5G013630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AccBSI CCGCTC 1 cut(s) 138
AciI CCGC 2 cut(s) 138, 149
AcoI YGGCCR 1 cut(s) 192
AgsI TTSAA 2 cut(s) 79, 102
AjnI CCWGG 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 117
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 2 cut(s) 192, 246
ApeKI GCWGC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 194
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 96
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
BseBI CCWGG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 2 cut(s) 194, 248
BsmAI GTCTC 1 cut(s) 117
BsnI GGCC 2 cut(s) 194, 248
Bsp143I GATC 2 cut(s) 171, 295
BspACI CCGC 2 cut(s) 138, 149
BspANI GGCC 2 cut(s) 194, 248
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 280
BspMAI CTGCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 214
BsrBI CCGCTC 1 cut(s) 138
BssMI GATC 2 cut(s) 171, 295
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 243
BstKTI GATC 2 cut(s) 174, 298
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 2 cut(s) 171, 295
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 217
BsuRI GGCC 2 cut(s) 194, 248
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 3 cut(s) 165, 174, 295
BveI ACCTGC 1 cut(s) 214
CaiI CAGNNNCTG 1 cut(s) 230
CseI GACGC 2 cut(s) 21, 236
CviAII CATG 3 cut(s) 43, 196, 299
CviJI RGCY 4 cut(s) 5, 194, 248, 281
CviKI_1 RGCY 4 cut(s) 5, 194, 248, 281
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 173, 297
DpnII GATC 2 cut(s) 171, 295
EaeI YGGCCR 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 94
FaeI CATG 3 cut(s) 46, 199, 302
FaiI YATR 7 cut(s) 14, 44, 65, 70, 191, 197, 300
FatI CATG 3 cut(s) 42, 195, 298
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 2 cut(s) 194, 248
HgaI GACGC 2 cut(s) 21, 236
Hin1II CATG 3 cut(s) 46, 199, 302
HinfI GANTC 2 cut(s) 49, 75
Hpy166II GTNNAC 2 cut(s) 163, 262
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 2 cut(s) 163, 262
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 16, 209, 233, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 3 cut(s) 46, 199, 302
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 2 cut(s) 171, 295
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 5 cut(s) 69, 81, 108, 219, 237
Lsp1109I GCAGC 1 cut(s) 217
MalI GATC 2 cut(s) 173, 297
MbiI CCGCTC 1 cut(s) 138
MboI GATC 2 cut(s) 171, 295
MboII GAAGA 1 cut(s) 44
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 3 cut(s) 85, 126, 266
MluNI TGGCCA 1 cut(s) 194
MnlI CCTC 2 cut(s) 126, 238
Mox20I TGGCCA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 194
MslI CAYNNNNRTG 1 cut(s) 188
Msp20I TGGCCA 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 2 cut(s) 171, 295
NlaIII CATG 3 cut(s) 46, 199, 302
NlaIV GGNNCC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 49, 75
PflFI GACNNNGTC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 280
PstI CTGCAG 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 230
PsyI GACNNNGTC 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 188
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 2 cut(s) 171, 295
ScrFI CCNGG 1 cut(s) 96
SetI ASST 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 3 cut(s) 85, 126, 266
SsiI CCGC 2 cut(s) 138, 149
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 169
TasI AATT 3 cut(s) 85, 126, 266
TfiI GAWTC 2 cut(s) 49, 75
TscAI CASTG 3 cut(s) 165, 174, 295
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 31, 212
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 3 cut(s) 165, 174, 295
Tth111I GACNNNGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.