Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011972

Physical Location & Seq

Genomic Coordinates Reverse (-)

37828630 .. 37830590

Gene Structure 1961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1247100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTTTATGTGGATAATTCCCGTTGCAATATTATATGCGTTCAACAATAATTTGCTTCCCGGTGTAAGCGACATGTCTCCCTATTCACTCACATTGTTGAGTGGATTTCTTGCTGTTATATCTGTCAACGTTGTTATCGCATTTTACATATATATGGCAATGAAAGAACCTTCAGACAAACACAAGCCTGATCCTGCATTTCTTGCTGAAGCCGAAGCTAGTGTAAGCAAATTAAAAGGCGACGCTGATTCTTCCCAATCCTCCAAGAAAGAAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VMA21

Protein Analysis

93

Amino Acids

10.02

Weight (kDa)

5.12

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VMA21	PF09446	1 - 54	2.5e-17	VMA21-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05780 AT2G31710
fragaria_vesca	FvH4_3g12930 FvH4_4g01060
malus_domestica	MD05G1247100.v1.1 MD10G1227700.v1.1
prunus_persica	Prupe.4G117300_v2.0.a1 Prupe.4G117300_v2.0.a1
pyrus_communis	pycom05g22300 pycom10g19120
rosa_chinensis	RchiOBHm_Chr5g0021041
rosa_laevigata	RLG00000032578
rosa_multiflora	Rmu_co8487873.1_g000001
rosa_rugosa	Rorug05G0063800
rosa_samantha	Rh5AG153400 Rh5BG153100 Rh5CG165900 Rh5DG152700
rosa_wichuraiana	Rw5G013630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	129
AclWI	GGATC	1 cut(s)	185
AcuI	CTGAAG	2 cut(s)	156, 228
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	60
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	165
BssMI	GATC	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	58
CseI	GACGC	1 cut(s)	251
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	3 cut(s)	187, 212, 218
CviKI_1	RGCY	3 cut(s)	187, 212, 218
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eco57I	CTGAAG	2 cut(s)	156, 228
FaeI	CATG	1 cut(s)	76
FaiI	YATR	9 cut(s)	8, 34, 36, 74, 119, 149, 151, 153, 155
FatI	CATG	1 cut(s)	72
FspBI	CTAG	1 cut(s)	219
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	60
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	180, 266
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	26, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	3 cut(s)	73, 201, 207
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	129
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	243
MluCI	AATT	3 cut(s)	15, 49, 230
MnlI	CCTC	1 cut(s)	271
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	76
NspI	RCATGY	1 cut(s)	76
PciI	ACATGT	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	248
PscI	ACATGT	1 cut(s)	72
Psp1406I	AACGTT	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	233
Sau3AI	GATC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	60
SetI	ASST	3 cut(s)	132, 172, 220
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	15, 49, 230
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	58
TaiI	ACGT	1 cut(s)	132
TasI	AATT	3 cut(s)	15, 49, 230
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	176
XceI	RCATGY	1 cut(s)	76
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.