AT2G31710

Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011972
Physical Location & Seq
Reverse (-)
13481758 .. 13483193
1436 bp
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UTR
Exon/CDS
Intron
AT2G31710.1

Sequence Viewer

Length: 318 bp
ATGGCTGGGGTTATGCAGAAGTTCCTTATTGCATCAATGTTTATGTGGATTCTTCCTATTGCAATATTATATGGATTCAACAATGATTTGCTTCCTGGGTCAACAACGTTGTCTCCACATTCTCTGACACTACTGAGTGGATTTCTTGCCGTGGTATCAGTCAATGTAGTTATTGTGTTTTACATCTGTCTGGCCCTGAAAGAACCTGCGGATAAACACAAGCCAGACGCTTCGTTTGTTGCAGAGGCTAAAGACAGTGTTAAGAAATTGACATCAGGAGTCACAAATACTGACCCTGCGCTGAAGAAACAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VMA21

Protein Analysis

105

Amino Acids

11.37

Weight (kDa)

7.87

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VMA21 PF09446 4 - 66 1e-21 VMA21-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05780 AT2G31710
fragaria_vesca FvH4_3g12930 FvH4_4g01060
malus_domestica MD05G1247100.v1.1 MD10G1227700.v1.1
prunus_persica Prupe.4G117300_v2.0.a1 Prupe.4G117300_v2.0.a1
pyrus_communis pycom05g22300 pycom10g19120
rosa_chinensis RchiOBHm_Chr5g0021041
rosa_laevigata RLG00000032578
rosa_multiflora Rmu_co8487873.1_g000001
rosa_rugosa Rorug05G0063800
rosa_samantha Rh5AG153400 Rh5BG153100 Rh5CG165900 Rh5DG152700
rosa_wichuraiana Rw5G013630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AciI CCGC 1 cut(s) 209
AclI AACGTT 1 cut(s) 107
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 117
AoxI GGCC 1 cut(s) 192
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 95, 150
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 95, 150
BseMII CTCAG 1 cut(s) 125
BseYI CCCAGC 1 cut(s) 5
BshFI GGCC 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 117
BsnI GGCC 1 cut(s) 194
BspACI CCGC 1 cut(s) 209
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 95, 150
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 301
BstMAI GTCTC 1 cut(s) 117
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 262
BveI ACCTGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 1 cut(s) 236
CviJI RGCY 4 cut(s) 5, 194, 223, 248
CviKI_1 RGCY 4 cut(s) 5, 194, 223, 248
DdeI CTNAG 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 94
FaiI YATR 4 cut(s) 14, 44, 70, 72
GlaI GCGC 1 cut(s) 300
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 194
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 301
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 3 cut(s) 49, 75, 279
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 4 cut(s) 16, 32, 62, 242
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 107
HspAI GCGC 1 cut(s) 299
LpnPI CCDG 8 cut(s) 81, 108, 176, 209, 219, 237, 261, 309
LweI GCATC 1 cut(s) 41
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 280
MboII GAAGA 2 cut(s) 44, 316
MluCI AATT 1 cut(s) 266
MlyI GAGTC 1 cut(s) 288
MnlI CCTC 1 cut(s) 238
MseI TTAA 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 49, 75
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
Psp1406I AACGTT 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 94
PspPI GGNCC 1 cut(s) 193
SaqAI TTAA 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 1 cut(s) 96
SetI ASST 2 cut(s) 110, 208
SfaNI GCATC 1 cut(s) 41
Sse9I AATT 1 cut(s) 266
SsiI CCGC 1 cut(s) 209
SspI AATATT 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 110
TasI AATT 1 cut(s) 266
TfiI GAWTC 2 cut(s) 49, 75
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspRI CASTG 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.