Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006315

Physical Location & Seq

Genomic Coordinates Reverse (-)

5536360 .. 5538598

Gene Structure 2239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0063800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCAAGTGTATCCAGGGCTGCGAGGGAGGAGAGAAGAATTGCACGCCAAAAAAAGAAGACTTATTCTGAGCACGAGAAATGATGCTCATGCCGCATCTGCTTCTTCGAGAATGGGAGGAGAGAGGGATGCAACTGGTGCTGGTTCTGATGCGCAGAACAACGAACCAGACCTCTACTTGTTCTGCACGCCGGATAACAGGAAACTGAGATTTTTGTTCAAAAAGGAGCTCAAGAAGAGTGATATTGGATCTTGGGGCAGGATTGTCCTTCCTAAGAAGGAGGCAGAAAAATACCTTCCCAGCCTCTCTGGCAAGGAAGGAATCGAGTTGATGATCAAGGATGCCCTCTCAAACCAAGAGTGGGGTTTGACATACAAACACAGGTACTGGACCAATAACAACAGCCGAATGTATGTTCTTGAACATATACAGGAGACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VMA21

Protein Analysis

147

Amino Acids

16.94

Weight (kDa)

9.57

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30970 AT1G30970 AT1G30970
fragaria_vesca	FvH4_3g12940 FvH4_3g12940
malus_domestica	MD05G1247000.v1.1 MD10G1227600.v1.1
prunus_persica	Prupe.4G117400_v2.0.a1 Prupe.4G117400_v2.0.a1
pyrus_communis	pycom05g22290 pycom10g19110
rosa_chinensis	RchiOBHm_Chr5g0021051
rosa_laevigata	RLG00000032579
rosa_multiflora	Rmu_co8457001.1_g000001 Rmu_ssc0000244.1_g000001 Rmu_ssc0000244.1_g000016
rosa_roxburghii	Rroxscaffold_1G00057410 Rroxscaffold_1G00057920
rosa_rugosa	Rorug05G0063800 Rorug05G0063800 Rorug07G0277600
rosa_samantha	Rh5AG153500 Rh5BG153200 Rh5CG166000 Rh5CG410900 Rh5DG152800
rosa_wichuraiana	Rw5G013640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	153
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	256
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	220, 422
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw21I	GWGCWC	2 cut(s)	74, 231
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	387
ApeKI	GCWGC	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	390
AvaII	GGWCC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	2 cut(s)	74, 231
BbvI	GCAGC	1 cut(s)	6
BciT130I	CCWGG	1 cut(s)	15
BciVI	GTATCC	1 cut(s)	21
BclI	TGATCA	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	21
BglI	GCCNNNNNGGC	1 cut(s)	309
BisI	GCNGC	2 cut(s)	20, 93
BlsI	GCNGC	2 cut(s)	21, 94
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	5 cut(s)	73, 104, 118, 139, 331
BpiI	GAAGAC	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	14
BsaXI	ACNNNNNCTCC	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	2 cut(s)	139, 392
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	2 cut(s)	133, 346
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	59, 197
BseNI	ACTGG	2 cut(s)	139, 392
BseRI	GAGGAG	2 cut(s)	43, 132
BseXI	GCAGC	1 cut(s)	6
BseYI	CCCAGC	1 cut(s)	299
BsgI	GTGCAG	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	74, 231
BsiSI	CCGG	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	74, 231
Bsp143I	GATC	2 cut(s)	248, 333
BspACI	CCGC	1 cut(s)	93
BspCNI	CTCAG	2 cut(s)	60, 198
BspPI	GGATC	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	139, 392
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	2 cut(s)	248, 333
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	45, 188
BstDEI	CTNAG	3 cut(s)	68, 206, 273
BstF5I	GGATG	2 cut(s)	133, 346
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	2 cut(s)	251, 336
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	2 cut(s)	248, 333
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 98, 137, 309
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BsuI	GTATCC	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	133, 346
Cac8I	GCNNGC	2 cut(s)	45, 188
CaiI	CAGNNNCTG	1 cut(s)	387
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	4 cut(s)	19, 229, 303, 405
CviKI_1	RGCY	4 cut(s)	19, 229, 303, 405
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	3 cut(s)	68, 206, 273
DpnI	GATC	2 cut(s)	250, 335
DpnII	GATC	2 cut(s)	248, 333
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	1 cut(s)	92
FaiI	YATR	5 cut(s)	90, 373, 414, 426, 428
FatI	CATG	1 cut(s)	88
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	20, 93
FokI	GGATG	2 cut(s)	140, 353
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	20, 93
FspI	TGCGCA	1 cut(s)	153
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	2 cut(s)	20, 93
GsaI	CCCAGC	1 cut(s)	303
HapII	CCGG	1 cut(s)	191
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	1 cut(s)	321
HpaII	CCGG	1 cut(s)	191
Hpy188I	TCNGA	2 cut(s)	69, 148
Hpy188III	TCNNGA	3 cut(s)	108, 232, 419
HpyAV	CCTTC	4 cut(s)	271, 278, 305, 311
HpyCH4V	TGCA	4 cut(s)	4, 43, 131, 186
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 98, 137, 309
HpyF3I	CTNAG	3 cut(s)	68, 206, 273
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	248, 333
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	1 cut(s)	6
LweI	GCATC	5 cut(s)	73, 104, 118, 139, 331
MalI	GATC	2 cut(s)	250, 335
MboI	GATC	2 cut(s)	248, 333
MboII	GAAGA	4 cut(s)	47, 69, 96, 247
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	2 cut(s)	74, 231
MluCI	AATT	1 cut(s)	38
MnlI	CCTC	8 cut(s)	17, 21, 110, 117, 182, 274, 314, 356
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	4 cut(s)	92, 98, 137, 309
NdeII	GATC	2 cut(s)	248, 333
NlaIII	CATG	1 cut(s)	92
NsbI	TGCGCA	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	21, 94
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	231
SatI	GCNGC	2 cut(s)	20, 93
Sau3AI	GATC	2 cut(s)	248, 333
Sau96I	GGNCC	1 cut(s)	390
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	2 cut(s)	74, 231
SetI	ASST	4 cut(s)	174, 231, 297, 386
SfaNI	GCATC	5 cut(s)	73, 104, 118, 139, 331
SinI	GGWCC	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	13
TaqI	TCGA	2 cut(s)	107, 324
TasI	AATT	1 cut(s)	38
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	321
TseI	GCWGC	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.