Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8457001.1

Orthogroup ID

OG0006315

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1659

Gene Structure 1659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8457001.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 487 bp

ggttcccaatgcaaaggctgggagggaatcgacagatattgaaatatatgggatgcaaggaatcccacctgacgtcttagctgcacattatggagaggaagaagacgacaccccgtcaaaaatggctaaagtggaaatcccatcaaatcagcttgttagcagtgtggtgccaggttcattggggacatatcctccccaaccacctgttggaatgcggccaatatacaattcatcgattccaatgcctcataatggttggcaagttgcacctcatccccagccttggtatccacagcctgtggcagcctctgttcctccgccttccggaatgggttattcacaacagccattgtttcctgtgcagccacctctaccatcaacaacatcccctggacttcaatcttcacatgtaactcctcctggactgcctgcatctatgcatcctgtaccagtatcacaacctctgtttcctgttgttgggcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000075 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0001578 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008270 GO:0008608 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0015631 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030071 GO:0031109 GO:0031323 GO:0031326 GO:0031577 GO:0031647 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046785 GO:0046872 GO:0046914 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0051128 GO:0051129 GO:0051171 GO:0051225 GO:0051252 GO:0051258 GO:0051276 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070925 GO:0071173 GO:0071174 GO:0071840 GO:0080090 GO:0090307 GO:0097435 GO:0098687 GO:0098813 GO:0140014 GO:0140110 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902850 GO:1903047 GO:1903506 GO:1905818 GO:1905819 GO:1990047 GO:2000112 GO:2000816 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.03

Weight (kDa)

5.61

Isoelectric Point (pI)

84.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30970 AT1G30970 AT1G30970
fragaria_vesca	FvH4_3g12940 FvH4_3g12940
malus_domestica	MD05G1247000.v1.1 MD10G1227600.v1.1
prunus_persica	Prupe.4G117400_v2.0.a1 Prupe.4G117400_v2.0.a1
pyrus_communis	pycom05g22290 pycom10g19110
rosa_chinensis	RchiOBHm_Chr5g0021051
rosa_laevigata	RLG00000032579
rosa_multiflora	Rmu_co8457001.1_g000001 Rmu_ssc0000244.1_g000001 Rmu_ssc0000244.1_g000016
rosa_roxburghii	Rroxscaffold_1G00057410 Rroxscaffold_1G00057920
rosa_rugosa	Rorug05G0063800 Rorug05G0063800 Rorug07G0277600
rosa_samantha	Rh5AG153500 Rh5BG153200 Rh5CG166000 Rh5CG410900 Rh5DG152800
rosa_wichuraiana	Rw5G013640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	76
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	324
AciI	CCGC	2 cut(s)	215, 318
AcoI	YGGCCR	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	73
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	5 cut(s)	207, 252, 283, 324, 477
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	42, 399
AhdI	GACNNNNNGTC	1 cut(s)	113
AjnI	CCWGG	3 cut(s)	170, 389, 419
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	2 cut(s)	81, 152
AluI	AGCT	2 cut(s)	81, 152
AlwNI	CAGNNNCTG	1 cut(s)	309
Aor13HI	TCCGGA	1 cut(s)	324
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	3 cut(s)	81, 303, 362
AspLEI	GCGC	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	68, 315, 374
BccI	CCATC	2 cut(s)	149, 383
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	3 cut(s)	172, 391, 421
BciVI	GTATCC	1 cut(s)	298
BfaI	CTAG	1 cut(s)	485
BfoI	RGCGCY	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	4 cut(s)	82, 216, 304, 363
BlsI	GCNGC	4 cut(s)	83, 217, 305, 364
Bme1390I	CCNGG	3 cut(s)	172, 391, 421
BmeRI	GACNNNNNGTC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	4, 169
BmrFI	CCNGG	3 cut(s)	172, 391, 421
BmsI	GCATC	3 cut(s)	43, 441, 449
BpiI	GAAGAC	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	282, 389
BsaWI	WCCGGW	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	5 cut(s)	207, 252, 283, 324, 477
Bse1I	ACTGG	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	324
BseBI	CCWGG	3 cut(s)	172, 391, 421
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	282, 389
BseGI	GGATG	4 cut(s)	58, 272, 384, 440
BseLI	CCNNNNNNNGG	5 cut(s)	207, 252, 283, 324, 477
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	1 cut(s)	406
BseXI	GCAGC	3 cut(s)	68, 315, 374
BseYI	CCCAGC	2 cut(s)	18, 277
BsgI	GTGCAG	2 cut(s)	67, 381
BshFI	GGCC	1 cut(s)	218
BshNI	GGYRCC	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	325
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	5 cut(s)	207, 252, 283, 324, 477
BsmFI	GGGAC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	218
Bsp13I	TCCGGA	1 cut(s)	324
BspACI	CCGC	2 cut(s)	215, 318
BspANI	GGCC	1 cut(s)	218
BspDI	ATCGAT	1 cut(s)	234
BspEI	TCCGGA	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	4, 169
BspT107I	GGYRCC	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	2 cut(s)	282, 389
BssNI	GRCGYC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	3 cut(s)	172, 391, 421
BstACI	GRCGYC	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	4 cut(s)	58, 272, 384, 440
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	484
BstNI	CCWGG	3 cut(s)	172, 391, 421
BstNSI	RCATGY	1 cut(s)	411
BstSCI	CCNGG	3 cut(s)	170, 389, 419
BstV1I	GCAGC	3 cut(s)	68, 315, 374
BstV2I	GAAGAC	1 cut(s)	109
Bsu15I	ATCGAT	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	218
BsuTUI	ATCGAT	1 cut(s)	234
BtsCI	GGATG	4 cut(s)	58, 272, 384, 440
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	430
CaiI	CAGNNNCTG	1 cut(s)	309
CfoI	GCGC	1 cut(s)	484
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	1 cut(s)	408
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	1 cut(s)	77
DriI	GACNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	216
Eam1105I	GACNNNNNGTC	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	282
EcoRII	CCWGG	3 cut(s)	170, 389, 419
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	411
FaiI	YATR	8 cut(s)	47, 49, 91, 188, 224, 250, 409, 438
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	1 cut(s)	407
Fnu4HI	GCNGC	4 cut(s)	82, 216, 304, 363
FokI	GGATG	4 cut(s)	65, 259, 371, 427
Fsp4HI	GCNGC	4 cut(s)	82, 216, 304, 363
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	4 cut(s)	82, 216, 304, 363
GsaI	CCCAGC	2 cut(s)	22, 281
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	325
HhaI	GCGC	1 cut(s)	484
Hin1I	GRCGYC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	411
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HinfI	GANTC	3 cut(s)	27, 61, 236
HpaII	CCGG	1 cut(s)	325
Hpy188III	TCNNGA	1 cut(s)	325
HpyAV	CCTTC	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	7 cut(s)	12, 56, 84, 267, 362, 432, 440
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	73
Hsp92I	GRCGYC	1 cut(s)	73
Hsp92II	CATG	1 cut(s)	411
HspAI	GCGC	1 cut(s)	482
Kpn2I	TCCGGA	1 cut(s)	324
Lsp1109I	GCAGC	3 cut(s)	68, 315, 374
LweI	GCATC	3 cut(s)	43, 441, 449
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	410
MboII	GAAGA	3 cut(s)	111, 114, 394
MluCI	AATT	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	188
Mph1103I	ATGCAT	1 cut(s)	442
MroI	TCCGGA	1 cut(s)	324
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	3 cut(s)	172, 391, 421
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	3 cut(s)	172, 391, 421
NlaIII	CATG	1 cut(s)	411
NlaIV	GGNNCC	2 cut(s)	4, 169
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	411
PciI	ACATGT	1 cut(s)	407
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	3 cut(s)	27, 61, 236
PflMI	CCANNNNNTGG	1 cut(s)	207
PfoI	TCCNGGA	1 cut(s)	419
PkrI	GCNGC	4 cut(s)	83, 217, 305, 364
PscI	ACATGT	1 cut(s)	407
Psp6I	CCWGG	3 cut(s)	170, 389, 419
PspFI	CCCAGC	2 cut(s)	18, 277
PspGI	CCWGG	3 cut(s)	170, 389, 419
PspN4I	GGNNCC	2 cut(s)	4, 169
PstNI	CAGNNNCTG	1 cut(s)	309
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SatI	GCNGC	4 cut(s)	82, 216, 304, 363
ScrFI	CCNGG	3 cut(s)	172, 391, 421
SetI	ASST	9 cut(s)	71, 76, 83, 154, 176, 206, 272, 371, 464
SfaNI	GCATC	3 cut(s)	43, 441, 449
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	2 cut(s)	215, 318
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	3 cut(s)	170, 389, 419
StyI	CCWWGG	1 cut(s)	282
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	30, 234
TasI	AATT	1 cut(s)	227
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	3 cut(s)	27, 61, 236
TscAI	CASTG	1 cut(s)	167
TseI	GCWGC	3 cut(s)	81, 303, 362
TspDTI	ATGAA	2 cut(s)	166, 220
TspRI	CASTG	1 cut(s)	167
Van91I	CCANNNNNTGG	1 cut(s)	207
XceI	RCATGY	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	204
XspI	CTAG	1 cut(s)	485
ZraI	GACGTC	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.