Rh5CG410900

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006315
Physical Location & Seq
Reverse (-)
55493421 .. 55493885
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG410900.1

Sequence Viewer

Length: 465 bp
ATGTGGGGTTATTGCTTGGTTAATCACTTAATCTGGAAAAACCGAAATGCATGCAGATTCGGGGAAAAAGTTTGTGGTGGGGAGCAGCTTGTCAGTCAAGCACTTGAATGGCAAAACAGTTTCGGTAAAGCCAATTTGAGGCCACTCCCTGCTGTCTCATCTCGTATTTCATCAGATTCTTCTATTCCTTCTAGGAGGCAAATTCATCGGAACGATGGTCCCCCACAAGGCAGGCCTGGAGCTGTTGTGAGAGATGAGAAGGGTAGTATGAAAGAAGCACTGATGCACACCATCCAAGGAGGACTGTCTGCTCATTCTGGTGAGGTGTTGGTGGTGCTTTTTGGAATGAGGTACTGTCTCATGGAAGGCTTCACGAAATTAGAAGTGGAATCTGATGAAACTGTGATTTCAAAATCAAATCCCTTTGATATCTGTTTTCACTTGGAATCTATGATTTTCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

154

Amino Acids

17.18

Weight (kDa)

7.69

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 74 - 136 3.6e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 2 cut(s) 138, 227
AgsI TTSAA 2 cut(s) 107, 411
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 2 cut(s) 88, 242
AluI AGCT 2 cut(s) 88, 242
Alw26I GTCTC 2 cut(s) 160, 362
AoxI GGCC 2 cut(s) 140, 233
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 332, 451
AvaII GGWCC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 97
BccI CCATC 2 cut(s) 209, 299
BcgI CGANNNNNNTGC 4 cut(s) 33, 67, 188, 222
BciT130I CCWGG 1 cut(s) 237
BcoDI GTCTC 2 cut(s) 160, 362
BfaI CTAG 2 cut(s) 192, 463
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 237
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 227
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 138, 227
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 2 cut(s) 142, 235
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 138, 227
BsmAI GTCTC 2 cut(s) 160, 362
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 2 cut(s) 142, 235
BspANI GGCC 2 cut(s) 142, 235
BspLI GGNNCC 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 4 cut(s) 119, 306, 356, 403
BstC8I GCNNGC 2 cut(s) 52, 233
BstF5I GGATG 1 cut(s) 291
BstMAI GTCTC 2 cut(s) 160, 362
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 142, 235
BtsCI GGATG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 2 cut(s) 52, 233
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 352
CviAII CATG 2 cut(s) 51, 361
CviJI RGCY 6 cut(s) 88, 131, 142, 235, 242, 369
CviKI_1 RGCY 6 cut(s) 88, 131, 142, 235, 242, 369
CviQI GTAC 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 295
Eco147I AGGCCT 1 cut(s) 235
Eco32I GATATC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 235
EcoRV GATATC 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 295
EcoT22I ATGCAT 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 2 cut(s) 54, 364
FaiI YATR 4 cut(s) 52, 269, 362, 452
FaqI GGGAC 1 cut(s) 204
FatI CATG 2 cut(s) 50, 360
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 86
FspBI CTAG 2 cut(s) 192, 463
GluI GCNGC 1 cut(s) 86
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 2 cut(s) 142, 235
Hin1II CATG 2 cut(s) 54, 364
HinfI GANTC 4 cut(s) 57, 176, 389, 446
HphI GGTGA 2 cut(s) 332, 451
Hpy188I TCNGA 3 cut(s) 175, 210, 394
Hpy188III TCNNGA 2 cut(s) 34, 373
HpyAV CCTTC 3 cut(s) 198, 253, 359
HpyCH4III ACNGT 4 cut(s) 119, 306, 356, 403
HpyCH4V TGCA 3 cut(s) 50, 54, 286
Hsp92II CATG 2 cut(s) 54, 364
LmnI GCTCC 2 cut(s) 82, 239
LpnPI CCDG 6 cut(s) 19, 162, 217, 222, 249, 303
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 273
MaeI CTAG 2 cut(s) 192, 463
MboII GAAGA 1 cut(s) 171
MluCI AATT 3 cut(s) 133, 201, 377
MnlI CCTC 5 cut(s) 132, 189, 293, 316, 342
Mph1103I ATGCAT 1 cut(s) 52
MseI TTAA 2 cut(s) 21, 29
MslI CAYNNNNRTG 2 cut(s) 106, 318
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
NlaIII CATG 2 cut(s) 54, 364
NlaIV GGNNCC 1 cut(s) 220
NsiI ATGCAT 1 cut(s) 52
NspI RCATGY 1 cut(s) 54
PaeI GCATGC 1 cut(s) 54
PceI AGGCCT 1 cut(s) 235
PfeI GAWTC 4 cut(s) 57, 176, 389, 446
PkrI GCNGC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 218
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 2 cut(s) 106, 318
SaqAI TTAA 2 cut(s) 21, 29
SatI GCNGC 1 cut(s) 86
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 237
SetI ASST 5 cut(s) 90, 244, 327, 353, 464
SfaNI GCATC 1 cut(s) 273
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 106, 318
SphI GCATGC 1 cut(s) 54
Sse9I AATT 3 cut(s) 133, 201, 377
SseBI AGGCCT 1 cut(s) 235
SspMI CTAG 2 cut(s) 192, 463
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 1 cut(s) 235
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 4 cut(s) 119, 306, 356, 403
TasI AATT 3 cut(s) 133, 201, 377
TfiI GAWTC 4 cut(s) 57, 176, 389, 446
Tru1I TTAA 2 cut(s) 21, 29
Tru9I TTAA 2 cut(s) 21, 29
TscAI CASTG 1 cut(s) 285
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 4 cut(s) 159, 194, 284, 411
TspRI CASTG 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 54
XspI CTAG 2 cut(s) 192, 463
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.