Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006315

Physical Location & Seq

Genomic Coordinates Reverse (-)

11040250 .. 11043773

Gene Structure 3524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G30970.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGTAAGAAGAAGAAGAGAGCTACAGAGAAGGTGTGGTGTTATTACTGCGATAGAGAGTTTGATGATGAGAAGATTCTTGTGCAGCATCAGAAAGCTAAGCACTTTAAGTGTCATGTCTGTCATAAGAAGCTTTCTACAGCTAGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAAGTTCCTAATGCTAAAGACGGTCGAGATTCAACTGATATTGAAATATATGGAATGCAAGGAATTCCACCCCATGTCTTGACTGCTCATTATGGAGAAGAAGAGGATGAGCCTCCAGCCAAAGTTGCAAAAGTTGAGATTCCTTCTGCCCCTCTTGGTGGTGTAGTTCCTAGACCATATGGAATGGTATATCCGCCTCAACAAGTACCTGGTGCTGTACCTGCACGACCAATGTATTATCCGGGTCCTCCTATGCGTCATCCTGCTCCTGTATGGCAAATGCCACCTCCTCGTCCGCAACAATGGTATCCTCAAAATCCAGCTCTTTCTGTACCTCCAGCTGCCCATTTAGGGTATCGACCACAACCACTTTTTCCTGTTCAAAATATGGGGATGACTCCAACTCCAACCTCAGCTCCTGCCATACAACCATCACCAGTCACTGGAGTAACTCCTCCTGGAATTCCTACATCATCACCTGCAATGCCAGTTCCTCAACCTCTGTTCCCTGTTGTGAATAACAGCATTCCTTCTCAAGCTCCACCATTTTCTGCTCCTCTGCCTGTTGGTGGGGCTCAGCAACCATCTCATGCAGATGCTTTAGGATCAGCAGATGCTTATCCGCCTAACAATTCTATTCCAGGTGGGACTAATGCTCATTCTTATGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCTCCTGTAATTGCAAACAAAGCTCCTAGCAATCAGCCTAATGAGGTCTATCTTGTATGGGATGATGAAGCGATGTCTATGGAGGAAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAGATGAACTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTTGCTGGGCGGATGGCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

367

Amino Acids

39.8

Weight (kDa)

8.72

Isoelectric Point (pI)

67.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30970 AT1G30970 AT1G30970
fragaria_vesca	FvH4_3g12940 FvH4_3g12940
malus_domestica	MD05G1247000.v1.1 MD10G1227600.v1.1
prunus_persica	Prupe.4G117400_v2.0.a1 Prupe.4G117400_v2.0.a1
pyrus_communis	pycom05g22290 pycom10g19110
rosa_chinensis	RchiOBHm_Chr5g0021051
rosa_laevigata	RLG00000032579
rosa_multiflora	Rmu_co8457001.1_g000001 Rmu_ssc0000244.1_g000001 Rmu_ssc0000244.1_g000016
rosa_roxburghii	Rroxscaffold_1G00057410 Rroxscaffold_1G00057920
rosa_rugosa	Rorug05G0063800 Rorug05G0063800 Rorug07G0277600
rosa_samantha	Rh5AG153500 Rh5BG153200 Rh5CG166000 Rh5CG410900 Rh5DG152800
rosa_wichuraiana	Rw5G013640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	679
Acc36I	ACCTGC	2 cut(s)	421, 679
AccB7I	CCANNNNNTGG	1 cut(s)	635
AciI	CCGC	5 cut(s)	386, 488, 815, 879, 1090
AclWI	GGATC	1 cut(s)	805
AcsI	RAATTY	2 cut(s)	255, 654
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	3 cut(s)	399, 411, 525
AfiI	CCNNNNNNNGG	5 cut(s)	350, 543, 635, 761, 890
AgsI	TTSAA	4 cut(s)	225, 236, 575, 888
AjnI	CCWGG	3 cut(s)	400, 649, 832
AluBI	AGCT	9 cut(s)	23, 98, 133, 143, 515, 533, 608, 731, 920
AluI	AGCT	9 cut(s)	23, 98, 133, 143, 515, 533, 608, 731, 920
Alw21I	GWGCWC	1 cut(s)	1017
Alw44I	GTGCAC	1 cut(s)	1013
AlwI	GGATC	1 cut(s)	805
AlwNI	CAGNNNCTG	2 cut(s)	611, 635
AoxI	GGCC	1 cut(s)	865
ApaLI	GTGCAC	1 cut(s)	1013
ApeKI	GCWGC	3 cut(s)	85, 533, 1049
ApoI	RAATTY	2 cut(s)	255, 654
AspS9I	GGNCC	4 cut(s)	437, 866, 881, 893
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	3 cut(s)	166, 618, 660
AvaII	GGWCC	3 cut(s)	437, 881, 893
BaeGI	GKGCMC	1 cut(s)	1017
BaeI	ACNNNNGTAYC	2 cut(s)	482, 515
BanII	GRGCYC	1 cut(s)	769
Bbv12I	GWGCWC	1 cut(s)	1017
BbvCI	CCTCAGC	1 cut(s)	604
BbvI	GCAGC	3 cut(s)	97, 520, 1061
BccI	CCATC	3 cut(s)	631, 784, 1087
BciT130I	CCWGG	3 cut(s)	402, 651, 834
BciVI	GTATCC	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	435
BfaI	CTAG	4 cut(s)	144, 363, 876, 924
BfmI	CTRYAG	2 cut(s)	24, 138
BfuAI	ACCTGC	2 cut(s)	421, 679
BfuI	GTATCC	1 cut(s)	510
BisI	GCNGC	3 cut(s)	86, 534, 1050
BlpI	GCTNAGC	2 cut(s)	99, 768
BlsI	GCNGC	3 cut(s)	87, 535, 1051
Bme1390I	CCNGG	4 cut(s)	402, 435, 651, 834
Bme18I	GGWCC	3 cut(s)	437, 881, 893
BmgT120I	GGNCC	4 cut(s)	437, 866, 881, 893
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	4 cut(s)	402, 435, 651, 834
BmsI	GCATC	3 cut(s)	97, 778, 796
BpmI	CTGGAG	3 cut(s)	291, 513, 657
Bpu10I	CCTNAGC	1 cut(s)	604
Bpu1102I	GCTNAGC	2 cut(s)	99, 768
BpuEI	CTTGAG	1 cut(s)	711
BpuMI	CCSGG	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	810
BsaXI	ACNNNNNCTCC	4 cut(s)	580, 592, 610, 622
Bsc4I	CCNNNNNNNGG	5 cut(s)	350, 543, 635, 761, 890
Bse1I	ACTGG	3 cut(s)	629, 640, 680
Bse3DI	GCAATG	1 cut(s)	681
Bse8I	GATNNNNATC	1 cut(s)	810
BseBI	CCWGG	3 cut(s)	402, 651, 834
BseGI	GGATG	5 cut(s)	304, 451, 591, 964, 1098
BseJI	GATNNNNATC	1 cut(s)	810
BseLI	CCNNNNNNNGG	5 cut(s)	350, 543, 635, 761, 890
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	3 cut(s)	618, 782, 1083
BseNI	ACTGG	3 cut(s)	629, 640, 680
BseRI	GAGGAG	3 cut(s)	471, 636, 738
BseSI	GKGCMC	1 cut(s)	1017
BseXI	GCAGC	3 cut(s)	97, 520, 1061
BseYI	CCCAGC	1 cut(s)	1085
BsgI	GTGCAG	2 cut(s)	104, 399
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	1 cut(s)	867
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	1017
BsiSI	CCGG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	853
BslI	CCNNNNNNNGG	5 cut(s)	350, 543, 635, 761, 890
BsmFI	GGGAC	1 cut(s)	853
BsmI	GAATGC	2 cut(s)	252, 717
BsnI	GGCC	1 cut(s)	867
Bsp1286I	GDGCHC	2 cut(s)	769, 1017
Bsp143I	GATC	1 cut(s)	797
Bsp1720I	GCTNAGC	2 cut(s)	99, 768
BspACI	CCGC	5 cut(s)	386, 488, 815, 879, 1090
BspANI	GGCC	1 cut(s)	867
BspCNI	CTCAG	3 cut(s)	617, 781, 1082
BspLI	GGNNCC	1 cut(s)	438
BspMI	ACCTGC	2 cut(s)	421, 679
BspPI	GGATC	1 cut(s)	805
BsrDI	GCAATG	1 cut(s)	681
BsrI	ACTGG	3 cut(s)	629, 640, 680
BssMI	GATC	1 cut(s)	797
Bst2UI	CCWGG	3 cut(s)	402, 651, 834
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	2 cut(s)	11, 288
BstC8I	GCNNGC	1 cut(s)	1083
BstDEI	CTNAG	4 cut(s)	99, 604, 768, 1069
BstF5I	GGATG	5 cut(s)	304, 451, 591, 964, 1098
BstKTI	GATC	1 cut(s)	800
BstMBI	GATC	1 cut(s)	797
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 413, 917, 1087
BstNI	CCWGG	3 cut(s)	402, 651, 834
BstSCI	CCNGG	4 cut(s)	400, 433, 649, 832
BstSFI	CTRYAG	2 cut(s)	24, 138
BstSLI	GKGCMC	1 cut(s)	1017
BstV1I	GCAGC	3 cut(s)	97, 520, 1061
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	867
BtgZI	GCGATG	1 cut(s)	983
BtsCI	GGATG	5 cut(s)	304, 451, 591, 964, 1098
BtsIMutI	CAGTG	1 cut(s)	633
BveI	ACCTGC	2 cut(s)	421, 679
Cac8I	GCNNGC	1 cut(s)	1083
CaiI	CAGNNNCTG	2 cut(s)	611, 635
Cfr13I	GGNCC	4 cut(s)	437, 866, 881, 893
CseI	GACGC	1 cut(s)	437
CsiI	ACCWGGT	1 cut(s)	400
Csp6I	GTAC	3 cut(s)	398, 410, 524
CviAII	CATG	5 cut(s)	116, 151, 161, 266, 782
CviQI	GTAC	3 cut(s)	398, 410, 524
DdeI	CTNAG	4 cut(s)	99, 604, 768, 1069
DpnI	GATC	1 cut(s)	799
DpnII	GATC	1 cut(s)	797
Eam1104I	CTCTTC	2 cut(s)	11, 288
EarI	CTCTTC	2 cut(s)	11, 288
EciI	GGCGGA	2 cut(s)	375, 804
Eco24I	GRGCYC	1 cut(s)	769
Eco47I	GGWCC	3 cut(s)	437, 881, 893
Eco57I	CTGAAG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRI	GAATTC	2 cut(s)	255, 654
EcoRII	CCWGG	3 cut(s)	400, 649, 832
EcoT38I	GRGCYC	1 cut(s)	769
FaeI	CATG	5 cut(s)	119, 154, 164, 269, 785
FaqI	GGGAC	1 cut(s)	853
FatI	CATG	5 cut(s)	115, 150, 160, 265, 781
FauNDI	CATATG	1 cut(s)	370
Fnu4HI	GCNGC	3 cut(s)	86, 534, 1050
FokI	GGATG	4 cut(s)	311, 438, 598, 971
FriOI	GRGCYC	1 cut(s)	769
Fsp4HI	GCNGC	3 cut(s)	86, 534, 1050
FspBI	CTAG	4 cut(s)	144, 363, 876, 924
GluI	GCNGC	3 cut(s)	86, 534, 1050
GsaI	CCCAGC	1 cut(s)	1089
GsuI	CTGGAG	3 cut(s)	291, 513, 657
HaeIII	GGCC	1 cut(s)	867
HapII	CCGG	1 cut(s)	434
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	5 cut(s)	119, 154, 164, 269, 785
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	6 cut(s)	76, 157, 221, 331, 589, 1065
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	3 cut(s)	166, 618, 660
Hpy166II	GTNNAC	2 cut(s)	896, 1015
Hpy188I	TCNGA	2 cut(s)	93, 1072
Hpy188III	TCNNGA	2 cut(s)	218, 271
Hpy8I	GTNNAC	2 cut(s)	896, 1015
HpyAV	CCTTC	4 cut(s)	25, 345, 732, 894
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	9 cut(s)	85, 250, 320, 416, 674, 785, 911, 1015, 1049
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 413, 917, 1087
HpyF3I	CTNAG	4 cut(s)	99, 604, 768, 1069
Hsp92II	CATG	5 cut(s)	119, 154, 164, 269, 785
Kzo9I	GATC	1 cut(s)	797
LmnI	GCTCC	5 cut(s)	463, 613, 736, 751, 925
Lsp1109I	GCAGC	3 cut(s)	97, 520, 1061
LweI	GCATC	3 cut(s)	97, 778, 796
MabI	ACCWGGT	1 cut(s)	400
MaeI	CTAG	4 cut(s)	144, 363, 876, 924
MaeIII	GTNAC	3 cut(s)	187, 631, 640
MalI	GATC	1 cut(s)	799
MboI	GATC	1 cut(s)	797
MboII	GAAGA	8 cut(s)	22, 25, 28, 85, 158, 302, 305, 999
MfeI	CAATTG	1 cut(s)	888
MhlI	GDGCHC	2 cut(s)	769, 1017
MluCI	AATT	5 cut(s)	255, 654, 823, 888, 906
MlyI	GAGTC	1 cut(s)	583
MmeI	TCCRAC	2 cut(s)	617, 623
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	2 cut(s)	786, 855
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	4 cut(s)	402, 435, 651, 834
MunI	CAATTG	1 cut(s)	888
Mva1269I	GAATGC	2 cut(s)	252, 717
MvaI	CCWGG	3 cut(s)	402, 651, 834
MwoI	GCNNNNNNNGC	4 cut(s)	317, 413, 917, 1087
NciI	CCSGG	1 cut(s)	435
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	1 cut(s)	797
NlaIII	CATG	5 cut(s)	119, 154, 164, 269, 785
NlaIV	GGNNCC	1 cut(s)	438
NmuCI	GTSAC	1 cut(s)	631
PaqCI	CACCTGC	1 cut(s)	679
PctI	GAATGC	2 cut(s)	252, 717
PfeI	GAWTC	5 cut(s)	76, 157, 221, 331, 1065
PflMI	CCANNNNNTGG	1 cut(s)	635
PfoI	TCCNGGA	1 cut(s)	649
PkrI	GCNGC	3 cut(s)	87, 535, 1051
PleI	GAGTC	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	583
PpuMI	RGGWCCY	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	3 cut(s)	400, 649, 832
PspFI	CCCAGC	1 cut(s)	1085
PspGI	CCWGG	3 cut(s)	400, 649, 832
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	4 cut(s)	437, 866, 881, 893
PspPPI	RGGWCCY	1 cut(s)	437
PstNI	CAGNNNCTG	2 cut(s)	611, 635
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	3 cut(s)	399, 411, 525
RsaNI	GTAC	3 cut(s)	398, 410, 524
RseI	CAYNNNNRTG	2 cut(s)	786, 855
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	3 cut(s)	86, 534, 1050
Sau3AI	GATC	1 cut(s)	797
Sau96I	GGNCC	4 cut(s)	437, 866, 881, 893
SchI	GAGTC	1 cut(s)	583
ScrFI	CCNGG	4 cut(s)	402, 435, 651, 834
SduI	GDGCHC	2 cut(s)	769, 1017
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	3 cut(s)	97, 778, 796
SfcI	CTRYAG	2 cut(s)	24, 138
SinI	GGWCC	3 cut(s)	437, 881, 893
SmiMI	CAYNNNNRTG	2 cut(s)	786, 855
SmlI	CTYRAG	1 cut(s)	726
SmoI	CTYRAG	1 cut(s)	726
Sse9I	AATT	5 cut(s)	255, 654, 823, 888, 906
SsiI	CCGC	5 cut(s)	386, 488, 815, 879, 1090
SspMI	CTAG	4 cut(s)	144, 363, 876, 924
StyD4I	CCNGG	4 cut(s)	400, 433, 649, 832
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	3 cut(s)	217, 550, 1040
TasI	AATT	5 cut(s)	255, 654, 823, 888, 906
TfiI	GAWTC	5 cut(s)	76, 157, 221, 331, 1065
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	3 cut(s)	85, 533, 1049
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	5 cut(s)	149, 164, 978, 1035, 1049
TspRI	CASTG	1 cut(s)	640
Van91I	CCANNNNNTGG	1 cut(s)	635
VneI	GTGCAC	1 cut(s)	1013
VpaK11BI	GGWCC	3 cut(s)	437, 881, 893
XapI	RAATTY	2 cut(s)	255, 654
XspI	CTAG	4 cut(s)	144, 363, 876, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.