Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000244.1

Orthogroup ID

OG0006315

Physical Location & Seq

Genomic Coordinates Forward (+)

42 .. 3088

Gene Structure 3047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000244.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgggaaagaagaagaagagggtggcctcgaaggtgtggtgttactactgcgatagggagtttgacgacgagaagatattggtgcagcaccagaaagctaagcacttcaagtgccatgtctgccacaagaagctttctacagctgggggtatggccattcatgtcctccagcttgtcagtcaagcacttgaatggcaaaacagtttcggtaaagccaatttgaggccactccctgctgtctcatctcgtatttcatcagattcttctattccttctaggaggcaaattcgtcggaacgatggtcccccacaaggcaggcctggagctgttgtgagagatgagaagggtagtatgaaagaagcactgatgcacaccatccaaggaggactgtctgctcattctggtgaggtgttggtggtgctttttggaatgaggtactgtctcatggaaggcttcacgaaattagaagtggaatctgatgaaactgtgatttcagaatcaaatccctttgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000075 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0001578 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008270 GO:0008608 GO:0009889 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0015631 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030071 GO:0031109 GO:0031323 GO:0031326 GO:0031577 GO:0031647 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046785 GO:0046872 GO:0046914 GO:0048285 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050821 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051225 GO:0051239 GO:0051241 GO:0051252 GO:0051258 GO:0051276 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070925 GO:0071173 GO:0071174 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0097435 GO:0098687 GO:0098813 GO:0140014 GO:0140110 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902850 GO:1903047 GO:1903506 GO:1905818 GO:1905819 GO:1990047 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2000816 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

19.16

Weight (kDa)

9.26

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30970 AT1G30970 AT1G30970
fragaria_vesca	FvH4_3g12940 FvH4_3g12940
malus_domestica	MD05G1247000.v1.1 MD10G1227600.v1.1
prunus_persica	Prupe.4G117400_v2.0.a1 Prupe.4G117400_v2.0.a1
pyrus_communis	pycom05g22290 pycom10g19110
rosa_chinensis	RchiOBHm_Chr5g0021051
rosa_laevigata	RLG00000032579
rosa_multiflora	Rmu_co8457001.1_g000001 Rmu_ssc0000244.1_g000001 Rmu_ssc0000244.1_g000016
rosa_roxburghii	Rroxscaffold_1G00057410 Rroxscaffold_1G00057920
rosa_rugosa	Rorug05G0063800 Rorug05G0063800 Rorug07G0277600
rosa_samantha	Rh5AG153500 Rh5BG153200 Rh5CG166000 Rh5CG410900 Rh5DG152800
rosa_wichuraiana	Rw5G013640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	285
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	222, 311
AgsI	TTSAA	2 cut(s)	109, 191
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	5 cut(s)	98, 133, 143, 172, 326
AluI	AGCT	5 cut(s)	98, 133, 143, 172, 326
Alw26I	GTCTC	2 cut(s)	244, 446
AoxI	GGCC	4 cut(s)	24, 153, 224, 317
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	2 cut(s)	293, 383
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	244, 446
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	86
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	357
BpmI	CTGGAG	2 cut(s)	152, 342
Bpu1102I	GCTNAGC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 311
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	2 cut(s)	222, 311
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	4 cut(s)	26, 155, 226, 319
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	222, 311
BsmAI	GTCTC	2 cut(s)	244, 446
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	4 cut(s)	26, 155, 226, 319
Bsp1720I	GCTNAGC	1 cut(s)	99
BspANI	GGCC	4 cut(s)	26, 155, 226, 319
BspLI	GGNNCC	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	4 cut(s)	203, 390, 440, 487
Bst6I	CTCTTC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	375
BstMAI	GTCTC	2 cut(s)	244, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	97
BsuRI	GGCC	4 cut(s)	26, 155, 226, 319
BtsCI	GGATG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	3 cut(s)	116, 161, 445
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	379
Eco147I	AGGCCT	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	3 cut(s)	119, 164, 448
FaiI	YATR	5 cut(s)	117, 152, 162, 353, 446
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	3 cut(s)	115, 160, 444
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	1 cut(s)	86
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	1 cut(s)	86
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	2 cut(s)	152, 342
HaeIII	GGCC	4 cut(s)	26, 155, 226, 319
Hin1II	CATG	3 cut(s)	119, 164, 448
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	260, 473, 497
HphI	GGTGA	1 cut(s)	416
Hpy188I	TCNGA	4 cut(s)	259, 294, 478, 496
Hpy188III	TCNNGA	1 cut(s)	457
Hpy99I	CGWCG	2 cut(s)	71, 294
HpyAV	CCTTC	4 cut(s)	25, 282, 337, 443
HpyCH4III	ACNGT	4 cut(s)	203, 390, 440, 487
HpyCH4V	TGCA	2 cut(s)	85, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	119, 164, 448
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	8 cut(s)	104, 129, 182, 246, 301, 306, 333, 387
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	41
MboII	GAAGA	5 cut(s)	22, 25, 28, 85, 255
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	3 cut(s)	217, 285, 461
MluNI	TGGCCA	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	8 cut(s)	12, 37, 176, 216, 273, 377, 400, 426
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MslI	CAYNNNNRTG	2 cut(s)	190, 402
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	120
NlaIII	CATG	3 cut(s)	119, 164, 448
NlaIV	GGNNCC	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	319
PfeI	GAWTC	3 cut(s)	260, 473, 497
PkrI	GCNGC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	2 cut(s)	190, 402
SatI	GCNGC	1 cut(s)	86
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	8 cut(s)	36, 100, 135, 145, 174, 328, 411, 437
SfaNI	GCATC	1 cut(s)	357
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	190, 402
Sse9I	AATT	3 cut(s)	217, 285, 461
SseBI	AGGCCT	1 cut(s)	319
SspMI	CTAG	1 cut(s)	276
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	4 cut(s)	203, 390, 440, 487
TaqI	TCGA	1 cut(s)	29
TasI	AATT	3 cut(s)	217, 285, 461
TfiI	GAWTC	3 cut(s)	260, 473, 497
TscAI	CASTG	1 cut(s)	369
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	4 cut(s)	149, 243, 368, 495
TspRI	CASTG	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	285
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.