Rorug07G0277600

Cgr1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006315
Physical Location & Seq
Reverse (-)
26548075 .. 26549377
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0277600.1

Sequence Viewer

Length: 729 bp
ATGGTGAAGTTTACAGCTGAGGAGCTTCGCCGGATTATGGACTACAAACACAACATTCGCAATATGTCTGTTATTGCACATGTTGATCACGGGAAGTCAACCCTTACGGATTCTCTTGTGGCTGCTGCTGGTATCATTGCCCAAGAGGTTGCTGGTGATGTTCGGATGACAGATACCCGTGCTGATGAGGCAGAGCGTGGCATCACAATCAAATCTACTGAGACTGTGCTTCGTCAAGCCTTGGGAGAAAGGATCAGGCCTGTTTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAGCTCCAGGTGGATGGAGAGGAGGCGTACCAAGCATTTCAAAGGGTTATTGAGAATGCTAATGTCATTATGGCTACCTACGAAGACCCCCTCCTTGGTGATGTCCAGGTCTACCCTGAGAAAGGAACGGTTGCTTTCTCTGCTGGTTTGCATGGTTGGGCTTTCACTCTAACCAACTTTGCCAAGATGTATGCATCCAAGTTTGGAGTTGATGAGTCAAAGATGATGGAAAGGCTCTGGGGTGAGAACTATTTTGACCCAGCTACCGAGAAATGGACCACCAAGAGCACTGGTTCTGCTACCTGCAAGCGTGGTTTCGTTCAGTTCTGCTATGAACCCATCAAGCAGATTATCAACACTTGCATGAATGACCAGAAGGACAAGCTGTGGCCTATGTTGACAAAGCTTGGAGTCACCATGCATGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cgr1

Protein Analysis

242

Amino Acids

27.41

Weight (kDa)

5.65

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 18 - 75 8.2e-16 Elongation factor Tu GTP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 608
AccI GTMKAC 1 cut(s) 408
AclWI GGATC 1 cut(s) 260
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 4 cut(s) 37, 392, 419, 570
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 2 cut(s) 303, 402
AluBI AGCT 6 cut(s) 17, 25, 301, 560, 682, 703
AluI AGCT 6 cut(s) 17, 25, 301, 560, 682, 703
Alw21I GWGCWC 2 cut(s) 303, 587
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 1 cut(s) 260
AoxI GGCC 2 cut(s) 257, 686
ApeKI GCWGC 2 cut(s) 122, 125
AspS9I GGNCC 1 cut(s) 573
AsuHPI GGTGA 5 cut(s) 16, 167, 407, 551, 703
AvaII GGWCC 1 cut(s) 573
BanII GRGCYC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 2 cut(s) 303, 587
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 109, 112
BccI CCATC 4 cut(s) 274, 305, 517, 644
BciT130I CCWGG 2 cut(s) 305, 404
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 608
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
Bme1390I CCNGG 2 cut(s) 305, 404
Bme18I GGWCC 1 cut(s) 573
BmgT120I GGNCC 1 cut(s) 573
BmrFI CCNGG 2 cut(s) 305, 404
BmsI GCATC 2 cut(s) 210, 500
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 240, 391
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 392, 419, 570
Bse1I ACTGG 1 cut(s) 592
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 2 cut(s) 305, 404
BseDI CCNNGG 2 cut(s) 240, 391
BseGI GGATG 3 cut(s) 171, 316, 491
BseLI CCNNNNNNNGG 4 cut(s) 37, 392, 419, 570
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 3 cut(s) 9, 210, 405
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 2 cut(s) 35, 332
BseXI GCAGC 2 cut(s) 109, 112
BseYI CCCAGC 1 cut(s) 556
BshFI GGCC 2 cut(s) 259, 688
BsiHKAI GWGCWC 2 cut(s) 303, 587
BsiSI CCGG 1 cut(s) 31
BslI CCNNNNNNNGG 4 cut(s) 37, 392, 419, 570
BsmAI GTCTC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 2 cut(s) 259, 688
Bsp1286I GDGCHC 2 cut(s) 303, 587
Bsp143I GATC 2 cut(s) 85, 252
BspANI GGCC 2 cut(s) 259, 688
BspCNI CTCAG 3 cut(s) 10, 211, 406
BspMI ACCTGC 1 cut(s) 608
BspPI GGATC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 1 cut(s) 592
BssECI CCNNGG 2 cut(s) 240, 391
BssMI GATC 2 cut(s) 85, 252
BssT1I CCWWGG 2 cut(s) 240, 391
Bst2UI CCWGG 2 cut(s) 305, 404
Bst4CI ACNGT 3 cut(s) 226, 271, 427
Bst6I CTCTTC 1 cut(s) 717
BstC8I GCNNGC 1 cut(s) 605
BstDEI CTNAG 3 cut(s) 18, 219, 414
BstENI CCTNNNNNAGG 1 cut(s) 417
BstF5I GGATG 3 cut(s) 171, 316, 491
BstKTI GATC 2 cut(s) 88, 255
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 2 cut(s) 85, 252
BstMWI GCNNNNNNNGC 3 cut(s) 188, 329, 437
BstNI CCWGG 2 cut(s) 305, 404
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 2 cut(s) 303, 402
BstV1I GCAGC 2 cut(s) 109, 112
BstV2I GAAGAC 1 cut(s) 387
BstXI CCANNNNNNTGG 1 cut(s) 311
BsuRI GGCC 2 cut(s) 259, 688
BtsCI GGATG 3 cut(s) 171, 316, 491
BtsIMutI CAGTG 1 cut(s) 585
BveI ACCTGC 1 cut(s) 608
Cac8I GCNNGC 1 cut(s) 605
Cfr13I GGNCC 1 cut(s) 573
Csp6I GTAC 1 cut(s) 325
CviAII CATG 5 cut(s) 80, 449, 661, 715, 719
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 3 cut(s) 18, 219, 414
DpnI GATC 2 cut(s) 87, 254
DpnII GATC 2 cut(s) 85, 252
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 240, 391
Eco147I AGGCCT 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 573
Eco53kI GAGCTC 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 301
EcoNI CCTNNNNNAGG 1 cut(s) 417
EcoRII CCWGG 2 cut(s) 303, 402
EcoT14I CCWWGG 2 cut(s) 240, 391
EcoT22I ATGCAT 2 cut(s) 493, 720
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 2 cut(s) 240, 391
FaeI CATG 5 cut(s) 83, 452, 664, 718, 722
FatI CATG 5 cut(s) 79, 448, 660, 714, 718
FbaI TGATCA 1 cut(s) 85
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 2 cut(s) 123, 126
FokI GGATG 3 cut(s) 178, 323, 478
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 2 cut(s) 123, 126
GluI GCNGC 2 cut(s) 123, 126
GsaI CCCAGC 1 cut(s) 560
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 2 cut(s) 259, 688
HapII CCGG 1 cut(s) 31
Hin1II CATG 5 cut(s) 83, 452, 664, 718, 722
HincII GTYRAC 3 cut(s) 99, 274, 696
HindII GTYRAC 3 cut(s) 99, 274, 696
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 3 cut(s) 110, 512, 708
HpaI GTTAAC 1 cut(s) 274
HpaII CCGG 1 cut(s) 31
HphI GGTGA 5 cut(s) 16, 167, 407, 551, 703
Hpy166II GTNNAC 5 cut(s) 12, 99, 274, 409, 696
Hpy188I TCNGA 1 cut(s) 165
Hpy8I GTNNAC 5 cut(s) 12, 99, 274, 409, 696
HpyAV CCTTC 1 cut(s) 667
HpyCH4III ACNGT 3 cut(s) 226, 271, 427
HpyCH4V TGCA 6 cut(s) 77, 448, 491, 603, 660, 718
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 329, 437
HpyF3I CTNAG 3 cut(s) 18, 219, 414
Hsp92II CATG 5 cut(s) 83, 452, 664, 718, 722
Ksp22I TGATCA 1 cut(s) 85
KspAI GTTAAC 1 cut(s) 274
Kzo9I GATC 2 cut(s) 85, 252
LmnI GCTCC 2 cut(s) 22, 306
Lsp1109I GCAGC 2 cut(s) 109, 112
LweI GCATC 2 cut(s) 210, 500
MaeIII GTNAC 1 cut(s) 709
MalI GATC 2 cut(s) 87, 254
MboI GATC 2 cut(s) 85, 252
MboII GAAGA 1 cut(s) 392
MhlI GDGCHC 2 cut(s) 303, 587
MlyI GAGTC 2 cut(s) 521, 717
MnlI CCTC 6 cut(s) 13, 139, 181, 310, 313, 398
Mph1103I ATGCAT 2 cut(s) 493, 720
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 659
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 2 cut(s) 305, 404
Mva1269I GAATGC 1 cut(s) 358
MvaI CCWGG 2 cut(s) 305, 404
MwoI GCNNNNNNNGC 3 cut(s) 188, 329, 437
NdeII GATC 2 cut(s) 85, 252
NlaIII CATG 5 cut(s) 83, 452, 664, 718, 722
NmuCI GTSAC 1 cut(s) 709
NsiI ATGCAT 2 cut(s) 493, 720
NspI RCATGY 1 cut(s) 83
PceI AGGCCT 1 cut(s) 259
PciI ACATGT 1 cut(s) 79
PctI GAATGC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 2 cut(s) 124, 127
PleI GAGTC 2 cut(s) 520, 716
PpsI GAGTC 2 cut(s) 520, 716
PscI ACATGT 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 303, 402
PspFI CCCAGC 1 cut(s) 556
PspGI CCWGG 2 cut(s) 303, 402
PspPI GGNCC 1 cut(s) 573
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 659
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 2 cut(s) 85, 252
Sau96I GGNCC 1 cut(s) 573
SchI GAGTC 2 cut(s) 521, 717
ScrFI CCNGG 2 cut(s) 305, 404
SduI GDGCHC 2 cut(s) 303, 587
SfaNI GCATC 2 cut(s) 210, 500
SinI GGWCC 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SseBI AGGCCT 1 cut(s) 259
SstI GAGCTC 1 cut(s) 303
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 303, 402
StyI CCWWGG 2 cut(s) 240, 391
TaaI ACNGT 3 cut(s) 226, 271, 427
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 2 cut(s) 122, 125
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 2 cut(s) 645, 677
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 573
XagI CCTNNNNNAGG 1 cut(s) 417
XceI RCATGY 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 408
Zsp2I ATGCAT 2 cut(s) 493, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.