FvH4_3g12940

Protein SUPPRESSOR OF FRI

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
7727055 .. 7731869
4815 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12940.t1

Sequence Viewer

Length: 1065 bp
ATGGGAAAGAAGAAGAAGAGGGTGGCGTCGAAGGTGTGGTGTTACTACTGCGATAGGGAATTCGACGACGAGAAGATATTGGTGCAGCACCAGAAAGCTAAGCACTTCAAGTGCCACGTCTGCCACAAGAAGCTCTCCACTGCTGGAGGTATGGCCATTCATGTCCTCCAGGTCCACAAAGAGAACGTCACCAAGGTTCCGAATGCAAAGGCTGGGAGGGAGTCGACAGATATTGAAATATATGGGATGCAAGGAATCCCACCTGAAGTCTTGGCTGCACATTATGGAGAAGAAGAAGACGACACCCCATCAAAAATGGCTAAAGTGGAAATCCCATCGACTCAGCTTGTTGGCGGAGTGGTTCCAGGTCCATTGGGGACATATCCTCCCCAACCACCTTTTGGAATGCGGCCAATGTACAATGCATCTGTCCCATTGCCTCAAAACGGTTGGCAAGTTGCACCTCGTCCCCAGCCCTGGTACCCCCAGCCTCCGGCAGTCTCAGTTCCTCCACCTTCCGGACTGGGTTATGCACAGCAGCCGTTGTTTCCTGTGCAGTCACCTCTACCATCAACAACATCCCCTGGACTGCCTGCGTCAATGCATCCTGTACCTGTATCACAACCCCTGTTTCCTGTTGTTGGTGTCAATAATTTACCAACTCAAAGTTCTCCATATTCTGCTCCTATGCTTTCTACAAATATTCCATCAAACCCTCTTGGTTCGATGGATGCATATCAGGGCGCTAGAACTTCCAATCCAAGTAGTTACCACGCTTCAACTATTCCAGGTGGGAACTTAAATAATTCACACTCTTATGCTTCTGGTCCAAATACTGGTGGTCCATCAATTGGACCACCCCCTGTGATAGCAAACAAAGCTCCCCAGCCAGCCACTAATGAGGTGTATTTAGTTTGGGATGATGAGGCTATGTCCATGGAGGAAAGAAGAATGTCCTTAGCAAAGTATCAGGTGCATGATGAAACTACCCAGATGAGCTCAATCGATGCAGCCATAGACAGAAGGATTTTGGAGAGCAGGCTTGCTGGTCGAATGGCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000075 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0001578 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008270 GO:0008608 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0015631 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030071 GO:0031109 GO:0031323 GO:0031326 GO:0031577 GO:0031647 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046785 GO:0046872 GO:0046914 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0051128 GO:0051129 GO:0051171 GO:0051225 GO:0051252 GO:0051258 GO:0051276 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070925 GO:0071173 GO:0071174 GO:0071840 GO:0080090 GO:0090307 GO:0097435 GO:0098687 GO:0098813 GO:0140014 GO:0140110 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902850 GO:1903047 GO:1903506 GO:1905818 GO:1905819 GO:1990047 GO:2000112 GO:2000816 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

38.28

Weight (kDa)

8.23

Isoelectric Point (pI)

69.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 480
AccB1I GGYRCC 1 cut(s) 480
AccB7I CCANNNNNTGG 3 cut(s) 401, 836, 851
AccI GTMKAC 1 cut(s) 224
AccIII TCCGGA 1 cut(s) 518
AciI CCGC 2 cut(s) 354, 409
AcoI YGGCCR 2 cut(s) 153, 410
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 3 cut(s) 419, 482, 612
AfiI CCNNNNNNNGG 8 cut(s) 401, 446, 477, 493, 518, 641, 836, 851
AgsI TTSAA 3 cut(s) 109, 236, 780
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 5 cut(s) 168, 364, 476, 583, 787
AjuI GAANNNNNNNTTGG 2 cut(s) 652, 684
AloI GAACNNNNNNTCC 2 cut(s) 742, 774
AluBI AGCT 5 cut(s) 98, 133, 346, 881, 999
AluI AGCT 5 cut(s) 98, 133, 346, 881, 999
Alw21I GWGCWC 1 cut(s) 1001
Alw26I GTCTC 1 cut(s) 505
Aor13HI TCCGGA 1 cut(s) 518
AoxI GGCC 2 cut(s) 153, 410
ApeKI GCWGC 4 cut(s) 85, 275, 538, 1010
ApoI RAATTY 1 cut(s) 59
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
Asp718I GGTACC 1 cut(s) 480
AspLEI GCGC 1 cut(s) 746
AspS9I GGNCC 5 cut(s) 172, 368, 827, 842, 854
AsuHPI GGTGA 2 cut(s) 181, 552
AvaII GGWCC 5 cut(s) 172, 368, 827, 842, 854
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 480
BanII GRGCYC 1 cut(s) 1001
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 1001
BbvI GCAGC 4 cut(s) 97, 262, 550, 1022
BccI CCATC 6 cut(s) 316, 343, 577, 715, 721, 853
BceAI ACGGC 1 cut(s) 526
BciT130I CCWGG 5 cut(s) 170, 366, 478, 585, 789
BcoDI GTCTC 1 cut(s) 505
BfaI CTAG 1 cut(s) 747
BfoI RGCGCY 1 cut(s) 747
BisI GCNGC 5 cut(s) 86, 276, 410, 539, 1011
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 5 cut(s) 87, 277, 411, 540, 1012
Bme1390I CCNGG 5 cut(s) 170, 366, 478, 585, 789
Bme18I GGWCC 5 cut(s) 172, 368, 827, 842, 854
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 5 cut(s) 172, 368, 827, 842, 854
BmiI GGNNCC 3 cut(s) 198, 363, 482
BmrFI CCNGG 5 cut(s) 170, 366, 478, 585, 789
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 5 cut(s) 237, 434, 613, 721, 997
BmuI ACTGGG 1 cut(s) 533
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 2 cut(s) 152, 165
Bpu10I CCTNAGC 1 cut(s) 958
Bpu1102I GCTNAGC 1 cut(s) 99
Bsa29I ATCGAT 1 cut(s) 1005
BsaBI GATNNNNATC 1 cut(s) 735
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 4 cut(s) 192, 476, 583, 936
BsaWI WCCGGW 1 cut(s) 518
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bsc4I CCNNNNNNNGG 8 cut(s) 401, 446, 477, 493, 518, 641, 836, 851
Bse1I ACTGG 2 cut(s) 528, 841
Bse3DI GCAATG 1 cut(s) 434
Bse8I GATNNNNATC 1 cut(s) 735
BseAI TCCGGA 1 cut(s) 518
BseBI CCWGG 5 cut(s) 170, 366, 478, 585, 789
BseCI ATCGAT 1 cut(s) 1005
BseDI CCNNGG 4 cut(s) 192, 476, 583, 936
BseGI GGATG 5 cut(s) 252, 578, 604, 736, 925
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 8 cut(s) 401, 446, 477, 493, 518, 641, 836, 851
BseMI GCAATG 1 cut(s) 434
BseMII CTCAG 2 cut(s) 356, 516
BseNI ACTGG 2 cut(s) 528, 841
BseXI GCAGC 4 cut(s) 97, 262, 550, 1022
BseYI CCCAGC 4 cut(s) 212, 471, 486, 885
BsgI GTGCAG 3 cut(s) 104, 261, 575
BshFI GGCC 2 cut(s) 155, 412
BshNI GGYRCC 1 cut(s) 480
BshVI ATCGAT 1 cut(s) 1005
BsiHKAI GWGCWC 1 cut(s) 1001
BsiSI CCGG 2 cut(s) 494, 519
BslFI GGGAC 3 cut(s) 391, 416, 453
BslI CCNNNNNNNGG 8 cut(s) 401, 446, 477, 493, 518, 641, 836, 851
BsmAI GTCTC 1 cut(s) 505
BsmFI GGGAC 3 cut(s) 391, 416, 453
BsmI GAATGC 2 cut(s) 208, 411
BsnI GGCC 2 cut(s) 155, 412
Bsp1286I GDGCHC 1 cut(s) 1001
Bsp13I TCCGGA 1 cut(s) 518
Bsp1407I TGTACA 1 cut(s) 417
Bsp1720I GCTNAGC 1 cut(s) 99
Bsp19I CCATGG 1 cut(s) 936
BspACI CCGC 2 cut(s) 354, 409
BspANI GGCC 2 cut(s) 155, 412
BspCNI CTCAG 2 cut(s) 355, 515
BspDI ATCGAT 1 cut(s) 1005
BspEI TCCGGA 1 cut(s) 518
BspLI GGNNCC 3 cut(s) 198, 363, 482
BspT107I GGYRCC 1 cut(s) 480
BsrDI GCAATG 1 cut(s) 434
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 2 cut(s) 528, 841
BssECI CCNNGG 4 cut(s) 192, 476, 583, 936
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 2 cut(s) 192, 936
Bst2UI CCWGG 5 cut(s) 170, 366, 478, 585, 789
Bst4CI ACNGT 1 cut(s) 449
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 417
BstC8I GCNNGC 4 cut(s) 594, 891, 1040, 1044
BstDEI CTNAG 4 cut(s) 99, 342, 502, 958
BstDSI CCRYGG 1 cut(s) 936
BstF5I GGATG 5 cut(s) 252, 578, 604, 736, 925
BstH2I RGCGCY 1 cut(s) 747
BstHHI GCGC 1 cut(s) 746
BstMAI GTCTC 1 cut(s) 505
BstMWI GCNNNNNNNGC 2 cut(s) 120, 878
BstNI CCWGG 5 cut(s) 170, 366, 478, 585, 789
BstSCI CCNGG 5 cut(s) 168, 364, 476, 583, 787
BstV1I GCAGC 4 cut(s) 97, 262, 550, 1022
BstV2I GAAGAC 1 cut(s) 303
Bsu15I ATCGAT 1 cut(s) 1005
BsuRI GGCC 2 cut(s) 155, 412
BsuTUI ATCGAT 1 cut(s) 1005
BtgI CCRYGG 1 cut(s) 936
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 5 cut(s) 252, 578, 604, 736, 925
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 4 cut(s) 594, 891, 1040, 1044
CfoI GCGC 1 cut(s) 746
Cfr13I GGNCC 5 cut(s) 172, 368, 827, 842, 854
ClaI ATCGAT 1 cut(s) 1005
CseI GACGC 2 cut(s) 15, 585
Csp6I GTAC 3 cut(s) 418, 481, 611
CviAII CATG 3 cut(s) 161, 937, 977
CviQI GTAC 3 cut(s) 418, 481, 611
DdeI CTNAG 4 cut(s) 99, 342, 502, 958
EaeI YGGCCR 2 cut(s) 153, 410
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
EciI GGCGGA 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 999
Eco130I CCWWGG 2 cut(s) 192, 936
Eco24I GRGCYC 1 cut(s) 1001
Eco47I GGWCC 5 cut(s) 172, 368, 827, 842, 854
Eco53kI GAGCTC 1 cut(s) 999
Eco57I CTGAAG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 999
EcoRI GAATTC 1 cut(s) 59
EcoRII CCWGG 5 cut(s) 168, 364, 476, 583, 787
EcoT14I CCWWGG 2 cut(s) 192, 936
EcoT22I ATGCAT 3 cut(s) 427, 606, 736
EcoT38I GRGCYC 1 cut(s) 1001
ErhI CCWWGG 2 cut(s) 192, 936
FaeI CATG 3 cut(s) 164, 940, 980
FaqI GGGAC 3 cut(s) 391, 416, 453
FatI CATG 3 cut(s) 160, 936, 976
FblI GTMKAC 1 cut(s) 224
Fnu4HI GCNGC 5 cut(s) 86, 276, 410, 539, 1011
FokI GGATG 5 cut(s) 259, 565, 591, 743, 932
FriOI GRGCYC 1 cut(s) 1001
Fsp4HI GCNGC 5 cut(s) 86, 276, 410, 539, 1011
FspBI CTAG 1 cut(s) 747
GlaI GCGC 1 cut(s) 745
GluI GCNGC 5 cut(s) 86, 276, 410, 539, 1011
GsaI CCCAGC 4 cut(s) 216, 475, 490, 889
GsuI CTGGAG 2 cut(s) 152, 165
HaeII RGCGCY 1 cut(s) 747
HaeIII GGCC 2 cut(s) 155, 412
HapII CCGG 2 cut(s) 494, 519
HgaI GACGC 2 cut(s) 15, 585
HhaI GCGC 1 cut(s) 746
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 3 cut(s) 164, 940, 980
Hin6I GCGC 1 cut(s) 744
HinP1I GCGC 1 cut(s) 744
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 3 cut(s) 221, 255, 340
HpaII CCGG 2 cut(s) 494, 519
HphI GGTGA 2 cut(s) 181, 552
Hpy166II GTNNAC 2 cut(s) 175, 225
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 519
Hpy8I GTNNAC 2 cut(s) 175, 225
Hpy99I CGWCG 3 cut(s) 31, 68, 71
HpyAV CCTTC 3 cut(s) 25, 525, 1017
HpyCH4III ACNGT 1 cut(s) 449
HpyCH4IV ACGT 2 cut(s) 117, 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 878
HpyF3I CTNAG 4 cut(s) 99, 342, 502, 958
HpySE526I ACGT 2 cut(s) 117, 186
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 3 cut(s) 164, 940, 980
HspAI GCGC 1 cut(s) 744
Kpn2I TCCGGA 1 cut(s) 518
KpnI GGTACC 1 cut(s) 484
LmnI GCTCC 2 cut(s) 688, 886
Lsp1109I GCAGC 4 cut(s) 97, 262, 550, 1022
LweI GCATC 5 cut(s) 237, 434, 613, 721, 997
MaeI CTAG 1 cut(s) 747
MaeII ACGT 2 cut(s) 117, 186
MaeIII GTNAC 4 cut(s) 41, 187, 558, 767
MboII GAAGA 8 cut(s) 22, 25, 28, 85, 302, 305, 308, 960
MfeI CAATTG 1 cut(s) 849
MhlI GDGCHC 1 cut(s) 1001
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 5 cut(s) 59, 652, 805, 849, 1059
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 2 cut(s) 230, 334
Mox20I TGGCCA 1 cut(s) 155
Mph1103I ATGCAT 3 cut(s) 427, 606, 736
MroI TCCGGA 1 cut(s) 518
MscI TGGCCA 1 cut(s) 155
MseI TTAA 1 cut(s) 800
MslI CAYNNNNRTG 1 cut(s) 816
Msp20I TGGCCA 1 cut(s) 155
MspI CCGG 2 cut(s) 494, 519
MspR9I CCNGG 5 cut(s) 170, 366, 478, 585, 789
MunI CAATTG 1 cut(s) 849
Mva1269I GAATGC 2 cut(s) 208, 411
MvaI CCWGG 5 cut(s) 170, 366, 478, 585, 789
MwoI GCNNNNNNNGC 2 cut(s) 120, 878
NcoI CCATGG 1 cut(s) 936
NlaIII CATG 3 cut(s) 164, 940, 980
NlaIV GGNNCC 3 cut(s) 198, 363, 482
NmuCI GTSAC 2 cut(s) 187, 558
NsiI ATGCAT 3 cut(s) 427, 606, 736
PctI GAATGC 2 cut(s) 208, 411
PfeI GAWTC 1 cut(s) 255
PflMI CCANNNNNTGG 3 cut(s) 401, 836, 851
PkrI GCNGC 5 cut(s) 87, 277, 411, 540, 1012
PleI GAGTC 2 cut(s) 229, 334
PpsI GAGTC 2 cut(s) 229, 334
Psp124BI GAGCTC 1 cut(s) 1001
Psp6I CCWGG 5 cut(s) 168, 364, 476, 583, 787
PspFI CCCAGC 4 cut(s) 212, 471, 486, 885
PspGI CCWGG 5 cut(s) 168, 364, 476, 583, 787
PspN4I GGNNCC 3 cut(s) 198, 363, 482
PspPI GGNCC 5 cut(s) 172, 368, 827, 842, 854
RsaI GTAC 3 cut(s) 419, 482, 612
RsaNI GTAC 3 cut(s) 418, 481, 611
RseI CAYNNNNRTG 1 cut(s) 816
SacI GAGCTC 1 cut(s) 1001
SalI GTCGAC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 800
SatI GCNGC 5 cut(s) 86, 276, 410, 539, 1011
Sau96I GGNCC 5 cut(s) 172, 368, 827, 842, 854
SchI GAGTC 2 cut(s) 230, 334
ScrFI CCNGG 5 cut(s) 170, 366, 478, 585, 789
SduI GDGCHC 1 cut(s) 1001
SfaNI GCATC 5 cut(s) 237, 434, 613, 721, 997
SinI GGWCC 5 cut(s) 172, 368, 827, 842, 854
SmiMI CAYNNNNRTG 1 cut(s) 816
Sse9I AATT 5 cut(s) 59, 652, 805, 849, 1059
SsiI CCGC 2 cut(s) 354, 409
SspI AATATT 1 cut(s) 703
SspMI CTAG 1 cut(s) 747
SstI GAGCTC 1 cut(s) 1001
StyD4I CCNGG 5 cut(s) 168, 364, 476, 583, 787
StyI CCWWGG 2 cut(s) 192, 936
TaaI ACNGT 1 cut(s) 449
TaiI ACGT 2 cut(s) 120, 189
TaqI TCGA 7 cut(s) 29, 63, 224, 338, 725, 1005, 1051
TasI AATT 5 cut(s) 59, 652, 805, 849, 1059
TatI WGTACW 1 cut(s) 417
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 1 cut(s) 255
Tru1I TTAA 1 cut(s) 800
Tru9I TTAA 1 cut(s) 800
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 2 cut(s) 187, 558
TseI GCWGC 4 cut(s) 85, 275, 538, 1010
Tsp45I GTSAC 2 cut(s) 187, 558
TspDTI ATGAA 2 cut(s) 149, 996
TspRI CASTG 1 cut(s) 145
Van91I CCANNNNNTGG 3 cut(s) 401, 836, 851
VpaK11BI GGWCC 5 cut(s) 172, 368, 827, 842, 854
XapI RAATTY 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 224
XspI CTAG 1 cut(s) 747
Zsp2I ATGCAT 3 cut(s) 427, 606, 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.