Rroxscaffold_1G00057410

Protein SUPPRESSOR OF FRI

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006315
Physical Location & Seq
Reverse (-)
79374776 .. 79379462
4687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057410.1

Sequence Viewer

Length: 1167 bp
ATGGGAAAGAAGAAGAAGAGGGTGGCCTCGAAGGTGTGGTGTTACTACTGCGATAGGGAGTTTGACGACGAGAAGATATTGGTGCAGCACCAGAAAGCTAAGCACTTTAAGTGCCATGTCTGCCACAAGAAGCTTTCTACAGCTGGGGGTATGGCCATTCATGTCCTCCAGGTCCACAAAGAGAACGTCACCAAGGTTCCCAATGCAAAGGCTGGGAGGGAATCGACAGATATTGAAATATATGGGATGCAAGGAATCCCACCTGACGTCTTAGCTGCACATTATGGAGAGGAAGAAGACGACACCCCGTCAAAAATGGCTAAAGTGGAAATCCCATCAACTCAGCTTGTTGGCGGTGTGGTGCCAGGTTCAATGGGGACATATCCTCCCCAACCACCTTTTGGAATGCGGCCAATATACAATTCATCAGCCCCAATGCCTCACAACGGTTGGCAAGTTGCACCTCGTCCCCAGCCTTGGTACCCACAGCCTTTGGCAGTCTCTGTCCCTCCGGCTTCCGGAATGGGTTATTCACAACAGCCATTGTTTCCTGTGCAGCCACCTCTACCATCAACAACATCCCCTGGACTTCAATCTTCACACGTAACTCCTCCTGGACTGCCTGCATCTATGCATCCTGTACCTGTATCACAACCTCTGTTTCCTGTTGTTGGTGTCAATAATTTACCAACTCAAAGTTCTCCATTTTCTGCACCCCTGCTTTTAACAAATAATCCATCAAACCCTCTAGGCTCGATGGATGCACATCAGGGCGCTAGAACTTCAATTCCAAATAGTTACCATGCTTCAAATATTCCAGGTGGGAACTTCAATAATTCACACTCTTATGCATCTGGTCCAAATACTGGTGGCCCATCGATCGGACCACCCCCTGTAATAGCAAACAAAGCTCCCCAGCCAGCCACTAATGAGGTCTATTTAGTTTGGGATGATGAGGCTATGTCCATGGAGGAAAGAAGAATGTCCTTAGCAAAGTATCAGGTGCATGATGAAACTACCCAGGTAAGTCATACTACCTCTTTTACTTTTACGGAGTTGGATTTCTCTAACCAGATGGGTAGGCTTTATGTTTCGGCTATTCAGATTAGTTTGTTTACCAATTCTTTCCTGTTTATAAATGTATTTTCTGTACGACTTCGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000075 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0001578 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008270 GO:0008608 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0015631 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030071 GO:0031109 GO:0031323 GO:0031326 GO:0031577 GO:0031647 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046785 GO:0046872 GO:0046914 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0051128 GO:0051129 GO:0051171 GO:0051225 GO:0051252 GO:0051258 GO:0051276 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070925 GO:0071173 GO:0071174 GO:0071840 GO:0080090 GO:0090307 GO:0097435 GO:0098687 GO:0098813 GO:0140014 GO:0140110 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902850 GO:1903047 GO:1903506 GO:1905818 GO:1905819 GO:1990047 GO:2000112 GO:2000816 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

42.23

Weight (kDa)

8.25

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1136
AatII GACGTC 1 cut(s) 270
Acc65I GGTACC 1 cut(s) 480
AccB1I GGYRCC 2 cut(s) 361, 480
AccB7I CCANNNNNTGG 2 cut(s) 401, 866
AccIII TCCGGA 1 cut(s) 518
AciI CCGC 2 cut(s) 354, 409
AcoI YGGCCR 2 cut(s) 153, 410
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 3 cut(s) 482, 642, 1152
AfiI CCNNNNNNNGG 7 cut(s) 401, 446, 477, 518, 671, 866, 881
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 6 cut(s) 236, 372, 593, 786, 810, 832
AhdI GACNNNNNGTC 1 cut(s) 307
AjnI CCWGG 6 cut(s) 168, 364, 583, 613, 817, 1020
AjuI GAANNNNNNNTTGG 4 cut(s) 406, 438, 682, 714
AloI GAACNNNNNNTCC 2 cut(s) 772, 804
AluBI AGCT 6 cut(s) 98, 133, 143, 275, 346, 911
AluI AGCT 6 cut(s) 98, 133, 143, 275, 346, 911
Alw26I GTCTC 1 cut(s) 505
AlwNI CAGNNNCTG 1 cut(s) 503
Aor13HI TCCGGA 1 cut(s) 518
AoxI GGCC 4 cut(s) 24, 153, 410, 871
ApeKI GCWGC 3 cut(s) 85, 275, 556
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
Asp718I GGTACC 1 cut(s) 480
AspLEI GCGC 1 cut(s) 776
AspS9I GGNCC 4 cut(s) 172, 857, 872, 884
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 3 cut(s) 172, 857, 884
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 2 cut(s) 361, 480
BbsI GAAGAC 1 cut(s) 303
BbvI GCAGC 3 cut(s) 97, 262, 568
BccI CCATC 6 cut(s) 343, 577, 745, 751, 883, 1069
BciT130I CCWGG 6 cut(s) 170, 366, 585, 615, 819, 1022
BcoDI GTCTC 1 cut(s) 505
BfaI CTAG 2 cut(s) 749, 777
BfmI CTRYAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 777
BisI GCNGC 4 cut(s) 86, 276, 410, 557
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 4 cut(s) 87, 277, 411, 558
Bme1390I CCNGG 6 cut(s) 170, 366, 585, 615, 819, 1022
Bme18I GGWCC 3 cut(s) 172, 857, 884
BmeRI GACNNNNNGTC 1 cut(s) 307
BmgT120I GGNCC 4 cut(s) 172, 857, 872, 884
BmiI GGNNCC 3 cut(s) 198, 363, 482
BmrFI CCNGG 6 cut(s) 170, 366, 585, 615, 819, 1022
BmsI GCATC 5 cut(s) 237, 635, 643, 751, 860
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 988
Bpu1102I GCTNAGC 1 cut(s) 99
Bsa29I ATCGAT 1 cut(s) 878
BsaAI YACGTR 1 cut(s) 604
BsaBI GATNNNNATC 1 cut(s) 765
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 5 cut(s) 192, 476, 583, 966, 1020
BsaWI WCCGGW 1 cut(s) 518
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bsc4I CCNNNNNNNGG 7 cut(s) 401, 446, 477, 518, 671, 866, 881
Bse1I ACTGG 1 cut(s) 871
Bse8I GATNNNNATC 1 cut(s) 765
BseAI TCCGGA 1 cut(s) 518
BseBI CCWGG 6 cut(s) 170, 366, 585, 615, 819, 1022
BseCI ATCGAT 1 cut(s) 878
BseDI CCNNGG 5 cut(s) 192, 476, 583, 966, 1020
BseGI GGATG 5 cut(s) 252, 578, 634, 766, 955
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 7 cut(s) 401, 446, 477, 518, 671, 866, 881
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 871
BseRI GAGGAG 1 cut(s) 600
BseXI GCAGC 3 cut(s) 97, 262, 568
BseYI CCCAGC 4 cut(s) 143, 212, 471, 915
BsgI GTGCAG 4 cut(s) 104, 261, 575, 696
Bsh1285I CGRYCG 1 cut(s) 882
BshFI GGCC 4 cut(s) 26, 155, 412, 873
BshNI GGYRCC 2 cut(s) 361, 480
BshVI ATCGAT 1 cut(s) 878
BsiEI CGRYCG 1 cut(s) 882
BsiSI CCGG 2 cut(s) 512, 519
BslFI GGGAC 3 cut(s) 391, 453, 491
BslI CCNNNNNNNGG 7 cut(s) 401, 446, 477, 518, 671, 866, 881
BsmAI GTCTC 1 cut(s) 505
BsmFI GGGAC 3 cut(s) 391, 453, 491
BsmI GAATGC 1 cut(s) 411
BsnI GGCC 4 cut(s) 26, 155, 412, 873
Bsp13I TCCGGA 1 cut(s) 518
Bsp143I GATC 2 cut(s) 879, 1160
Bsp1720I GCTNAGC 1 cut(s) 99
Bsp19I CCATGG 1 cut(s) 966
BspACI CCGC 2 cut(s) 354, 409
BspANI GGCC 4 cut(s) 26, 155, 412, 873
BspCNI CTCAG 1 cut(s) 355
BspDI ATCGAT 1 cut(s) 878
BspEI TCCGGA 1 cut(s) 518
BspLI GGNNCC 3 cut(s) 198, 363, 482
BspT107I GGYRCC 2 cut(s) 361, 480
BsrI ACTGG 1 cut(s) 871
BssECI CCNNGG 5 cut(s) 192, 476, 583, 966, 1020
BssMI GATC 2 cut(s) 879, 1160
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 3 cut(s) 192, 476, 966
Bst2UI CCWGG 6 cut(s) 170, 366, 585, 615, 819, 1022
Bst4CI ACNGT 1 cut(s) 449
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 267
BstBAI YACGTR 1 cut(s) 604
BstC8I GCNNGC 2 cut(s) 624, 921
BstDEI CTNAG 4 cut(s) 99, 271, 342, 988
BstDSI CCRYGG 1 cut(s) 966
BstF5I GGATG 5 cut(s) 252, 578, 634, 766, 955
BstH2I RGCGCY 1 cut(s) 777
BstHHI GCGC 1 cut(s) 776
BstKTI GATC 2 cut(s) 882, 1163
BstMAI GTCTC 1 cut(s) 505
BstMBI GATC 2 cut(s) 879, 1160
BstMCI CGRYCG 1 cut(s) 882
BstMWI GCNNNNNNNGC 2 cut(s) 120, 908
BstNI CCWGG 6 cut(s) 170, 366, 585, 615, 819, 1022
BstSCI CCNGG 6 cut(s) 168, 364, 583, 613, 817, 1020
BstSFI CTRYAG 1 cut(s) 138
BstV1I GCAGC 3 cut(s) 97, 262, 568
BstV2I GAAGAC 1 cut(s) 303
Bsu15I ATCGAT 1 cut(s) 878
BsuRI GGCC 4 cut(s) 26, 155, 412, 873
BsuTUI ATCGAT 1 cut(s) 878
BtgI CCRYGG 1 cut(s) 966
BtsCI GGATG 5 cut(s) 252, 578, 634, 766, 955
Cac8I GCNNGC 2 cut(s) 624, 921
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 1 cut(s) 776
Cfr13I GGNCC 4 cut(s) 172, 857, 872, 884
ClaI ATCGAT 1 cut(s) 878
Csp6I GTAC 3 cut(s) 481, 641, 1151
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 5 cut(s) 116, 161, 803, 967, 1007
CviQI GTAC 3 cut(s) 481, 641, 1151
DdeI CTNAG 4 cut(s) 99, 271, 342, 988
DpnI GATC 2 cut(s) 881, 1162
DpnII GATC 2 cut(s) 879, 1160
DriI GACNNNNNGTC 1 cut(s) 307
EaeI YGGCCR 2 cut(s) 153, 410
Eam1104I CTCTTC 1 cut(s) 11
Eam1105I GACNNNNNGTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 11
Eco130I CCWWGG 3 cut(s) 192, 476, 966
Eco47I GGWCC 3 cut(s) 172, 857, 884
EcoRII CCWGG 6 cut(s) 168, 364, 583, 613, 817, 1020
EcoT14I CCWWGG 3 cut(s) 192, 476, 966
EcoT22I ATGCAT 2 cut(s) 636, 853
ErhI CCWWGG 3 cut(s) 192, 476, 966
FaeI CATG 5 cut(s) 119, 164, 806, 970, 1010
FaqI GGGAC 3 cut(s) 391, 453, 491
FatI CATG 5 cut(s) 115, 160, 802, 966, 1006
Fnu4HI GCNGC 4 cut(s) 86, 276, 410, 557
FokI GGATG 5 cut(s) 259, 565, 621, 773, 962
Fsp4HI GCNGC 4 cut(s) 86, 276, 410, 557
FspBI CTAG 2 cut(s) 749, 777
GlaI GCGC 1 cut(s) 775
GluI GCNGC 4 cut(s) 86, 276, 410, 557
GsaI CCCAGC 4 cut(s) 147, 216, 475, 919
GsuI CTGGAG 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 777
HaeIII GGCC 4 cut(s) 26, 155, 412, 873
HapII CCGG 2 cut(s) 512, 519
HhaI GCGC 1 cut(s) 776
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 5 cut(s) 119, 164, 806, 970, 1010
Hin6I GCGC 1 cut(s) 774
HinP1I GCGC 1 cut(s) 774
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 2 cut(s) 221, 255
HpaII CCGG 2 cut(s) 512, 519
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 175, 1116
Hpy188I TCNGA 2 cut(s) 884, 1104
Hpy188III TCNNGA 1 cut(s) 519
Hpy8I GTNNAC 2 cut(s) 175, 1116
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 449
HpyCH4IV ACGT 3 cut(s) 186, 267, 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 908
HpyF3I CTNAG 4 cut(s) 99, 271, 342, 988
HpySE526I ACGT 3 cut(s) 186, 267, 603
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 5 cut(s) 119, 164, 806, 970, 1010
HspAI GCGC 1 cut(s) 774
Kpn2I TCCGGA 1 cut(s) 518
KpnI GGTACC 1 cut(s) 484
Kzo9I GATC 2 cut(s) 879, 1160
LmnI GCTCC 1 cut(s) 916
Lsp1109I GCAGC 3 cut(s) 97, 262, 568
LweI GCATC 5 cut(s) 237, 635, 643, 751, 860
MaeI CTAG 2 cut(s) 749, 777
MaeII ACGT 3 cut(s) 186, 267, 603
MaeIII GTNAC 4 cut(s) 41, 187, 604, 797
MalI GATC 2 cut(s) 881, 1162
MboI GATC 2 cut(s) 879, 1160
MboII GAAGA 8 cut(s) 22, 25, 28, 85, 305, 308, 588, 990
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 5 cut(s) 421, 682, 786, 835, 1120
MluNI TGGCCA 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 1038
Mox20I TGGCCA 1 cut(s) 155
Mph1103I ATGCAT 2 cut(s) 636, 853
MroI TCCGGA 1 cut(s) 518
MscI TGGCCA 1 cut(s) 155
MseI TTAA 3 cut(s) 108, 725, 1165
MslI CAYNNNNRTG 1 cut(s) 846
Msp20I TGGCCA 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 2 cut(s) 512, 519
MspR9I CCNGG 6 cut(s) 170, 366, 585, 615, 819, 1022
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 6 cut(s) 170, 366, 585, 615, 819, 1022
MwoI GCNNNNNNNGC 2 cut(s) 120, 908
NcoI CCATGG 1 cut(s) 966
NdeII GATC 2 cut(s) 879, 1160
NlaIII CATG 5 cut(s) 119, 164, 806, 970, 1010
NlaIV GGNNCC 3 cut(s) 198, 363, 482
NmuCI GTSAC 1 cut(s) 187
NsiI ATGCAT 2 cut(s) 636, 853
PctI GAATGC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 221, 255
PflMI CCANNNNNTGG 2 cut(s) 401, 866
PfoI TCCNGGA 1 cut(s) 613
PkrI GCNGC 4 cut(s) 87, 277, 411, 558
Ple19I CGATCG 1 cut(s) 882
Ppu21I YACGTR 1 cut(s) 604
PsiI TTATAA 1 cut(s) 1136
Psp6I CCWGG 6 cut(s) 168, 364, 583, 613, 817, 1020
PspFI CCCAGC 4 cut(s) 143, 212, 471, 915
PspGI CCWGG 6 cut(s) 168, 364, 583, 613, 817, 1020
PspN4I GGNNCC 3 cut(s) 198, 363, 482
PspPI GGNCC 4 cut(s) 172, 857, 872, 884
PstNI CAGNNNCTG 1 cut(s) 503
PvuI CGATCG 1 cut(s) 882
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 3 cut(s) 482, 642, 1152
RsaNI GTAC 3 cut(s) 481, 641, 1151
RseI CAYNNNNRTG 1 cut(s) 846
SaqAI TTAA 3 cut(s) 108, 725, 1165
SatI GCNGC 4 cut(s) 86, 276, 410, 557
Sau3AI GATC 2 cut(s) 879, 1160
Sau96I GGNCC 4 cut(s) 172, 857, 872, 884
ScrFI CCNGG 6 cut(s) 170, 366, 585, 615, 819, 1022
SfaNI GCATC 5 cut(s) 237, 635, 643, 751, 860
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 3 cut(s) 172, 857, 884
SmiMI CAYNNNNRTG 1 cut(s) 846
Sse9I AATT 5 cut(s) 421, 682, 786, 835, 1120
SsiI CCGC 2 cut(s) 354, 409
SspI AATATT 1 cut(s) 814
SspMI CTAG 2 cut(s) 749, 777
StyD4I CCNGG 6 cut(s) 168, 364, 583, 613, 817, 1020
StyI CCWWGG 3 cut(s) 192, 476, 966
TaaI ACNGT 1 cut(s) 449
TaiI ACGT 3 cut(s) 189, 270, 606
TaqI TCGA 5 cut(s) 29, 224, 755, 878, 1159
TasI AATT 5 cut(s) 421, 682, 786, 835, 1120
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 2 cut(s) 221, 255
Tru1I TTAA 3 cut(s) 108, 725, 1165
Tru9I TTAA 3 cut(s) 108, 725, 1165
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 3 cut(s) 85, 275, 556
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 3 cut(s) 149, 414, 1026
TspGWI ACGGA 1 cut(s) 1067
Van91I CCANNNNNTGG 2 cut(s) 401, 866
VpaK11BI GGWCC 3 cut(s) 172, 857, 884
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XspI CTAG 2 cut(s) 749, 777
ZraI GACGTC 1 cut(s) 268
Zsp2I ATGCAT 2 cut(s) 636, 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.