Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009909

Physical Location & Seq

Genomic Coordinates Reverse (-)

1766503 .. 1768837

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGTGACAATCAGGAGTGGTTCAATCGTGATTTTGGTTCTGCTGGCTGTATCATTTCTGGCCTTGGTTGCCAATGGAGAGGACAAAACGATTAAAGTGAAGAAAGTGAGGGGAAATAAGGTGTGCACGCAAGGATGGGAATGCAGCTGGTGGTCTAAATACTGCTGTAACCAGACGATATCAGATTACTTTCAGGTTTATCAGTTTGAGCAACTCTTTTCCAAAAGGAACACTCCCATTGCTCATGCTGTTGGTTTCTGGGACTACCAGTCTTTCATTACTGCTGCTGCCCTCTTTGAGCCTCTTGGTTTTGGTACCACTGGAGGAAAGCTCATGGGACAGAAAGAAATGGCTGCCTTTCTCGGTCATGTAGCCAGCAAAACGTCCTGTGGCTATGGAGTTGCAACAGGAGGGCCTTTAGCTTGGGGTCTGTGCTACAACAGGGAAATGAGCCCAATGCAATCCTACTGTGACGAGTCCTGGAAATTCAAGTACCCCTGCAGCCCTGGAGCTGAATACTACGGACGCGGTGCCTTACCCATTTACTGGAACTTCAACTACGGAGCAGCTGGGGAAGCCCTGAAAGCTGATCTCTTGAACCACCCTGAGTACATTGAGCAAAACGCGACACTTGCATTCCAAGCTGCAATCTGGAGATGGATGACTCCAATCAAGAGAGCTCAGCCCTCAGCTCACGACATCTTTGTCGGAAACTGGAAACCTACAAAGAACGACACTTTGTCCAAGCGTGGCCCGACTTTTGGCAGCACCATGAACGTCCTCTACGGAGAGTACACATGTGGTCAAGGTTCCATTGATCCAATGAACAACATAATCTCACACTACTTATACTTCCTTGACCTCATGGGTATTGGAAGAGAAGACGCGGGACCAAACGATGAGCTCAGCTGCGCAGAACAGAAACCTTTCAACCCTTCAACTGTACCTTCCTCTTCCTCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009825 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010053 GO:0010167 GO:0010337 GO:0010565 GO:0010817 GO:0012505 GO:0016049 GO:0016051 GO:0019222 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0030246 GO:0030247 GO:0031323 GO:0032350 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051273 GO:0051274 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_19

Protein Analysis

321

Amino Acids

35.58

Weight (kDa)

7.49

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	68 - 294	1.2e-59	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05850 AT1G05850
fragaria_vesca	FvH4_4g11930
malus_domestica	MD04G1029400.v1.1 MD04G1030000.v1.1 MD04G1030300.v1.1 MD13G1278500.v1.1
prunus_persica	Prupe.1G179800_v2.0.a1
pyrus_communis	pycom04g02550
rosa_chinensis	RchiOBHm_Chr4g0409551
rosa_laevigata	RLG00000008556
rosa_multiflora	Rmu_sc0000647.1_g000016 Rmu_sc0001616.1_g000011
rosa_roxburghii	Rroxscaffold_5G00354020
rosa_rugosa	Rorug04G0094500
rosa_samantha	Rh4AG156500 Rh4BG155800 Rh4CG166100 Rh4DG149800
rosa_wichuraiana	Rw0G023420 Rw4G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	704
Acc16I	TGCGCA	1 cut(s)	913
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	2 cut(s)	314, 530
AccB7I	CCANNNNNTGG	1 cut(s)	546
AccII	CGCG	3 cut(s)	528, 626, 887
AciI	CCGC	2 cut(s)	528, 887
AclWI	GGATC	1 cut(s)	812
AcsI	RAATTY	1 cut(s)	485
AfaI	GTAC	5 cut(s)	316, 494, 611, 794, 945
AfiI	CCNNNNNNNGG	2 cut(s)	546, 761
AflIII	ACRYGT	1 cut(s)	797
AgsI	TTSAA	6 cut(s)	24, 490, 556, 598, 931, 939
AhdI	GACNNNNNGTC	2 cut(s)	268, 739
AjnI	CCWGG	2 cut(s)	479, 505
Alw21I	GWGCWC	3 cut(s)	128, 682, 906
Alw44I	GTGCAC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	812
AoxI	GGCC	3 cut(s)	60, 413, 751
ApaLI	GTGCAC	1 cut(s)	124
ApeKI	GCWGC	9 cut(s)	144, 284, 287, 353, 501, 566, 644, 765, 909
ApoI	RAATTY	1 cut(s)	485
Asp700I	GAANNNNTTC	1 cut(s)	926
Asp718I	GGTACC	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	914
AspS9I	GGNCC	3 cut(s)	413, 752, 890
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	890
BaeGI	GKGCMC	1 cut(s)	128
BanI	GGYRCC	2 cut(s)	314, 530
BanII	GRGCYC	3 cut(s)	455, 682, 906
BbsI	GAAGAC	1 cut(s)	888
Bbv12I	GWGCWC	3 cut(s)	128, 682, 906
BbvCI	CCTCAGC	1 cut(s)	688
BbvI	GCAGC	9 cut(s)	156, 271, 274, 340, 513, 578, 631, 777, 896
BccI	CCATC	2 cut(s)	129, 651
BciT130I	CCWGG	2 cut(s)	481, 507
BfmI	CTRYAG	1 cut(s)	499
BisI	GCNGC	9 cut(s)	145, 285, 288, 354, 502, 567, 645, 766, 910
BlpI	GCTNAGC	2 cut(s)	681, 905
BlsI	GCNGC	9 cut(s)	146, 286, 289, 355, 503, 568, 646, 767, 911
Bme1390I	CCNGG	2 cut(s)	481, 507
Bme18I	GGWCC	1 cut(s)	890
BmeRI	GACNNNNNGTC	2 cut(s)	268, 739
BmgT120I	GGNCC	3 cut(s)	413, 752, 890
BmiI	GGNNCC	4 cut(s)	316, 532, 811, 891
BmrFI	CCNGG	2 cut(s)	481, 507
BpiI	GAAGAC	1 cut(s)	888
BplI	GAGNNNNNCTC	2 cut(s)	315, 347
BpmI	CTGGAG	3 cut(s)	342, 528, 673
Bpu10I	CCTNAGC	1 cut(s)	688
Bpu1102I	GCTNAGC	2 cut(s)	681, 905
BsaJI	CCNNGG	2 cut(s)	63, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	546, 761
Bse1I	ACTGG	4 cut(s)	268, 325, 551, 719
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	481, 507
BseDI	CCNNGG	2 cut(s)	63, 505
BseGI	GGATG	2 cut(s)	140, 666
BseLI	CCNNNNNNNGG	2 cut(s)	546, 761
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	4 cut(s)	597, 695, 702, 919
BseNI	ACTGG	4 cut(s)	268, 325, 551, 719
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	9 cut(s)	156, 271, 274, 340, 513, 578, 631, 777, 896
BseYI	CCCAGC	1 cut(s)	569
Bsh1236I	CGCG	3 cut(s)	528, 626, 887
BshFI	GGCC	3 cut(s)	62, 415, 753
BshNI	GGYRCC	2 cut(s)	314, 530
BsiHKAI	GWGCWC	3 cut(s)	128, 682, 906
BslFI	GGGAC	3 cut(s)	275, 351, 903
BslI	CCNNNNNNNGG	2 cut(s)	546, 761
BsmFI	GGGAC	3 cut(s)	275, 351, 903
BsmI	GAATGC	2 cut(s)	146, 635
BsnI	GGCC	3 cut(s)	62, 415, 753
Bsp1286I	GDGCHC	4 cut(s)	128, 455, 682, 906
Bsp143I	GATC	2 cut(s)	589, 817
Bsp1720I	GCTNAGC	2 cut(s)	681, 905
BspACI	CCGC	2 cut(s)	528, 887
BspANI	GGCC	3 cut(s)	62, 415, 753
BspCNI	CTCAG	4 cut(s)	598, 694, 701, 918
BspFNI	CGCG	3 cut(s)	528, 626, 887
BspLI	GGNNCC	4 cut(s)	316, 532, 811, 891
BspMAI	CTGCAG	1 cut(s)	503
BspPI	GGATC	1 cut(s)	812
BspT107I	GGYRCC	2 cut(s)	314, 530
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	4 cut(s)	268, 325, 551, 719
BssECI	CCNNGG	2 cut(s)	63, 505
BssMI	GATC	2 cut(s)	589, 817
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	481, 507
Bst4CI	ACNGT	2 cut(s)	470, 943
Bst6I	CTCTTC	2 cut(s)	871, 958
BstC8I	GCNNGC	3 cut(s)	45, 128, 376
BstDEI	CTNAG	4 cut(s)	606, 681, 688, 905
BstF5I	GGATG	2 cut(s)	140, 666
BstFNI	CGCG	3 cut(s)	528, 626, 887
BstHHI	GCGC	1 cut(s)	914
BstKTI	GATC	2 cut(s)	592, 820
BstMBI	GATC	2 cut(s)	589, 817
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 575, 584, 632, 641
BstNI	CCWGG	2 cut(s)	481, 507
BstNSI	RCATGY	1 cut(s)	801
BstSCI	CCNGG	2 cut(s)	479, 505
BstSFI	CTRYAG	1 cut(s)	499
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	3 cut(s)	528, 626, 887
BstV1I	GCAGC	9 cut(s)	156, 271, 274, 340, 513, 578, 631, 777, 896
BstV2I	GAAGAC	1 cut(s)	888
BsuRI	GGCC	3 cut(s)	62, 415, 753
BtsCI	GGATG	2 cut(s)	140, 666
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	45, 128, 376
CfoI	GCGC	1 cut(s)	914
Cfr13I	GGNCC	3 cut(s)	413, 752, 890
CseI	GACGC	2 cut(s)	534, 893
Csp6I	GTAC	5 cut(s)	315, 493, 610, 793, 944
CviAII	CATG	6 cut(s)	245, 334, 368, 772, 798, 865
CviQI	GTAC	5 cut(s)	315, 493, 610, 793, 944
DdeI	CTNAG	4 cut(s)	606, 681, 688, 905
DpnI	GATC	2 cut(s)	591, 819
DpnII	GATC	2 cut(s)	589, 817
DrdI	GACNNNNNNGTC	1 cut(s)	704
DriI	GACNNNNNGTC	2 cut(s)	268, 739
DseDI	GACNNNNNNGTC	1 cut(s)	704
Eam1104I	CTCTTC	2 cut(s)	871, 958
Eam1105I	GACNNNNNGTC	2 cut(s)	268, 739
EarI	CTCTTC	2 cut(s)	871, 958
Ecl136II	GAGCTC	2 cut(s)	680, 904
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	3 cut(s)	455, 682, 906
Eco32I	GATATC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	890
Eco53kI	GAGCTC	2 cut(s)	680, 904
EcoICRI	GAGCTC	2 cut(s)	680, 904
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRII	CCWGG	2 cut(s)	479, 505
EcoRV	GATATC	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	3 cut(s)	455, 682, 906
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	6 cut(s)	248, 337, 371, 775, 801, 868
FaiI	YATR	9 cut(s)	246, 335, 369, 396, 773, 799, 833, 850, 866
FaqI	GGGAC	3 cut(s)	275, 351, 903
FatI	CATG	6 cut(s)	244, 333, 367, 771, 797, 864
FauI	CCCGC	1 cut(s)	880
Fnu4HI	GCNGC	9 cut(s)	145, 285, 288, 354, 502, 567, 645, 766, 910
FokI	GGATG	2 cut(s)	147, 673
FriOI	GRGCYC	3 cut(s)	455, 682, 906
Fsp4HI	GCNGC	9 cut(s)	145, 285, 288, 354, 502, 567, 645, 766, 910
FspI	TGCGCA	1 cut(s)	913
GlaI	GCGC	1 cut(s)	913
GluI	GCNGC	9 cut(s)	145, 285, 288, 354, 502, 567, 645, 766, 910
GsaI	CCCAGC	1 cut(s)	573
GsuI	CTGGAG	3 cut(s)	342, 528, 673
HaeIII	GGCC	3 cut(s)	62, 415, 753
HgaI	GACGC	2 cut(s)	534, 893
HhaI	GCGC	1 cut(s)	914
Hin1II	CATG	6 cut(s)	248, 337, 371, 775, 801, 868
Hin6I	GCGC	1 cut(s)	912
HinP1I	GCGC	1 cut(s)	912
HinfI	GANTC	2 cut(s)	476, 664
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	126, 795
Hpy188I	TCNGA	2 cut(s)	184, 710
Hpy188III	TCNNGA	6 cut(s)	13, 28, 595, 652, 673, 695
Hpy8I	GTNNAC	2 cut(s)	126, 795
HpyAV	CCTTC	2 cut(s)	945, 957
HpyCH4III	ACNGT	2 cut(s)	470, 943
HpyCH4IV	ACGT	2 cut(s)	383, 777
HpyCH4V	TGCA	7 cut(s)	126, 144, 404, 460, 501, 635, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 575, 584, 632, 641
HpyF3I	CTNAG	4 cut(s)	606, 681, 688, 905
HpySE526I	ACGT	2 cut(s)	383, 777
Hsp92II	CATG	6 cut(s)	248, 337, 371, 775, 801, 868
HspAI	GCGC	1 cut(s)	912
KpnI	GGTACC	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	589, 817
LmnI	GCTCC	2 cut(s)	509, 563
Lsp1109I	GCAGC	9 cut(s)	156, 271, 274, 340, 513, 578, 631, 777, 896
MaeII	ACGT	2 cut(s)	383, 777
MaeIII	GTNAC	3 cut(s)	4, 167, 470
MalI	GATC	2 cut(s)	591, 819
MboI	GATC	2 cut(s)	589, 817
MboII	GAAGA	5 cut(s)	112, 888, 893, 945, 951
MhlI	GDGCHC	4 cut(s)	128, 455, 682, 906
MluCI	AATT	1 cut(s)	485
MlyI	GAGTC	2 cut(s)	485, 658
MmeI	TCCRAC	1 cut(s)	688
MroXI	GAANNNNTTC	1 cut(s)	926
MseI	TTAA	1 cut(s)	93
MspA1I	CMGCKG	3 cut(s)	147, 569, 909
MspR9I	CCNGG	2 cut(s)	481, 507
Mva1269I	GAATGC	2 cut(s)	146, 635
MvaI	CCWGG	2 cut(s)	481, 507
MvnI	CGCG	3 cut(s)	528, 626, 887
MwoI	GCNNNNNNNGC	5 cut(s)	68, 575, 584, 632, 641
NdeII	GATC	2 cut(s)	589, 817
NlaIII	CATG	6 cut(s)	248, 337, 371, 775, 801, 868
NlaIV	GGNNCC	4 cut(s)	316, 532, 811, 891
NmuCI	GTSAC	2 cut(s)	4, 470
NsbI	TGCGCA	1 cut(s)	913
NspI	RCATGY	1 cut(s)	801
PciI	ACATGT	1 cut(s)	797
PctI	GAATGC	2 cut(s)	146, 635
PdmI	GAANNNNTTC	1 cut(s)	926
PflMI	CCANNNNNTGG	1 cut(s)	546
PfoI	TCCNGGA	1 cut(s)	479
PkrI	GCNGC	9 cut(s)	146, 286, 289, 355, 503, 568, 646, 767, 911
PleI	GAGTC	2 cut(s)	484, 658
PpsI	GAGTC	2 cut(s)	484, 658
PscI	ACATGT	1 cut(s)	797
Psp124BI	GAGCTC	2 cut(s)	682, 906
Psp6I	CCWGG	2 cut(s)	479, 505
PspFI	CCCAGC	1 cut(s)	569
PspGI	CCWGG	2 cut(s)	479, 505
PspN4I	GGNNCC	4 cut(s)	316, 532, 811, 891
PspPI	GGNCC	3 cut(s)	413, 752, 890
PsrI	GAACNNNNNNTAC	4 cut(s)	542, 574, 767, 799
PstI	CTGCAG	1 cut(s)	503
PvuII	CAGCTG	3 cut(s)	147, 569, 909
RsaI	GTAC	5 cut(s)	316, 494, 611, 794, 945
RsaNI	GTAC	5 cut(s)	315, 493, 610, 793, 944
SacI	GAGCTC	2 cut(s)	682, 906
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	9 cut(s)	145, 285, 288, 354, 502, 567, 645, 766, 910
Sau3AI	GATC	2 cut(s)	589, 817
Sau96I	GGNCC	3 cut(s)	413, 752, 890
SchI	GAGTC	2 cut(s)	485, 658
ScrFI	CCNGG	2 cut(s)	481, 507
SduI	GDGCHC	4 cut(s)	128, 455, 682, 906
SfcI	CTRYAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	890
Sse9I	AATT	1 cut(s)	485
SsiI	CCGC	2 cut(s)	528, 887
SstI	GAGCTC	2 cut(s)	682, 906
StyD4I	CCNGG	2 cut(s)	479, 505
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	470, 943
TaiI	ACGT	2 cut(s)	386, 780
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	1 cut(s)	485
TatI	WGTACW	2 cut(s)	609, 792
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	2 cut(s)	4, 470
TseI	GCWGC	9 cut(s)	144, 284, 287, 353, 501, 566, 644, 765, 909
Tsp45I	GTSAC	2 cut(s)	4, 470
TspDTI	ATGAA	3 cut(s)	265, 788, 839
TspGWI	ACGGA	3 cut(s)	537, 576, 801
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	546
VneI	GTGCAC	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	890
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	1 cut(s)	801
XmnI	GAANNNNTTC	1 cut(s)	926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.