Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009909

Physical Location & Seq

Genomic Coordinates Reverse (-)

3314368 .. 3316127

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1029400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAGATCTCCGCTGCTGCATTGGTGGCGGTGGTGGCGCTGAGTGTTGTCCTGTGTGCCAGCAGCGACGGCGATTACTCGTCCACCGTCGCGAAAGTGAAGATTGTGAGGGGGAAGAAGCTGTGCGACAAAGGGTGGAAGTGTAAAGGGTGGTCAAAGTACTTTTGCAATCTCACCATCTCCGATTACTTCCAGACTTACCAGTTTGAGAATCTGTTCTCCAAGAGAAACACGCCGGTGGCGCATGCCGTTGGGTTTTGGGATTACCAGGCGTTTATCACCGCCGCCGCGCTTTTCGAGCCTCTTGGGTTTGGGACCACGGGTGGGAAGCTTATGCAGATGAAGGAGATCGCCGCCTTTCTTGGACATGTCGGCAGCAAAACCTCTTGGAAGTCACCACTCTTGTTTGTGCATAGAATTGCTATTTTGGGCGGTTACGGTGTGGCCACCGGAGGACCATACGCTTGGGGGCTTTGCTACAACAGGGAAATGAGTCCCATGCAGTCATACTGTGATGACTATTACAAGTACATATATCCCTGCAGCCCTGGAGCTGAATACTATGGCCGTGGTGCTTTGCCTATCTACTGGAACTACAATTACGGTGCAGCTGGAGACGCTTTGAAGGTGGATCTGTTGAACCATCCAGAATACATTGAGCAGAACGCTACTCTTGCTTTCCAAGCTGCAGTATGGAGGTGGATGACCCCTATCAAGAAGTCACAACCCTCGGCCCACCAAGCATTTGTTGGAGACTGGAAGCCTACCAAGAACGATACCTTGAGTAAGCGGTTTCCTGGATTTGGCACTACAATGAATATTCTTTATGGGGAATCAGTTTGTGGCAAGGGTGACATTGATGCCATGAACAGCATCGTTTCACATTACCAGTACTACCTGGACCTTATGGGTGTCGGTCGAGACGAGGCAGGGCCTCATGAAGTGTTAACTTGTGCCGAGCAGGTTGCATTTAACCCAATCCAGCCTGCTGTTACTGCATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009825 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010053 GO:0010167 GO:0010337 GO:0010565 GO:0010817 GO:0012505 GO:0016049 GO:0016051 GO:0019222 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0030246 GO:0030247 GO:0031323 GO:0032350 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051273 GO:0051274 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_19

Protein Analysis

336

Amino Acids

36.97

Weight (kDa)

8.43

Isoelectric Point (pI)

27.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	68 - 309	1.7e-57	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05850 AT1G05850
fragaria_vesca	FvH4_4g11930
malus_domestica	MD04G1029400.v1.1 MD04G1030000.v1.1 MD04G1030300.v1.1 MD13G1278500.v1.1
prunus_persica	Prupe.1G179800_v2.0.a1
pyrus_communis	pycom04g02550
rosa_chinensis	RchiOBHm_Chr4g0409551
rosa_laevigata	RLG00000008556
rosa_multiflora	Rmu_sc0000647.1_g000016 Rmu_sc0001616.1_g000011
rosa_roxburghii	Rroxscaffold_5G00354020
rosa_rugosa	Rorug04G0094500
rosa_samantha	Rh4AG156500 Rh4BG155800 Rh4CG166100 Rh4DG149800
rosa_wichuraiana	Rw0G023420 Rw4G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	952
AccII	CGCG	2 cut(s)	92, 290
AciI	CCGC	8 cut(s)	12, 29, 282, 285, 288, 354, 432, 790
AclWI	GGATC	1 cut(s)	639
AcoI	YGGCCR	2 cut(s)	444, 565
AfaI	GTAC	3 cut(s)	161, 530, 893
AfiI	CCNNNNNNNGG	2 cut(s)	324, 803
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	625, 640
AjnI	CCWGG	4 cut(s)	267, 547, 796, 897
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	5 cut(s)	121, 331, 554, 611, 686
AluI	AGCT	5 cut(s)	121, 331, 554, 611, 686
Alw26I	GTCTC	3 cut(s)	609, 747, 915
AlwI	GGATC	1 cut(s)	639
AoxI	GGCC	4 cut(s)	444, 565, 732, 932
ApeKI	GCWGC	7 cut(s)	14, 17, 63, 375, 543, 608, 686
Asp700I	GAANNNNTTC	1 cut(s)	215
AspLEI	GCGC	3 cut(s)	40, 244, 292
AspS9I	GGNCC	5 cut(s)	315, 455, 733, 901, 932
AsuHPI	GGTGA	4 cut(s)	166, 271, 387, 863
AvaII	GGWCC	3 cut(s)	315, 455, 901
BalI	TGGCCA	1 cut(s)	446
BbvI	GCAGC	6 cut(s)	4, 75, 387, 555, 620, 673
BccI	CCATC	2 cut(s)	185, 651
BceAI	ACGGC	3 cut(s)	85, 233, 552
BcgI	CGANNNNNNTGC	2 cut(s)	947, 981
BciT130I	CCWGG	4 cut(s)	269, 549, 798, 899
BcoDI	GTCTC	3 cut(s)	609, 747, 915
BfmI	CTRYAG	2 cut(s)	541, 687
BfoI	RGCGCY	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	952
BglII	AGATCT	1 cut(s)	6
BmcAI	AGTACT	2 cut(s)	161, 893
Bme1390I	CCNGG	4 cut(s)	269, 549, 798, 899
Bme18I	GGWCC	3 cut(s)	315, 455, 901
BmgT120I	GGNCC	5 cut(s)	315, 455, 733, 901, 932
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	4 cut(s)	269, 549, 798, 899
BmsI	GCATC	2 cut(s)	850, 882
BpmI	CTGGAG	2 cut(s)	570, 633
BpuEI	CTTGAG	1 cut(s)	802
BsaJI	CCNNGG	4 cut(s)	318, 547, 568, 729
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 803
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	4 cut(s)	202, 593, 761, 889
BseBI	CCWGG	4 cut(s)	269, 549, 798, 899
BseDI	CCNNGG	4 cut(s)	318, 547, 568, 729
BseGI	GGATG	2 cut(s)	643, 708
BseLI	CCNNNNNNNGG	2 cut(s)	324, 803
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	4 cut(s)	202, 593, 761, 889
BseXI	GCAGC	6 cut(s)	4, 75, 387, 555, 620, 673
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	2 cut(s)	92, 290
Bsh1285I	CGRYCG	1 cut(s)	919
BshFI	GGCC	4 cut(s)	446, 567, 734, 934
BsiEI	CGRYCG	1 cut(s)	919
BsiSI	CCGG	2 cut(s)	236, 450
BslFI	GGGAC	2 cut(s)	328, 480
BslI	CCNNNNNNNGG	2 cut(s)	324, 803
BsmAI	GTCTC	3 cut(s)	609, 747, 915
BsmBI	CGTCTC	2 cut(s)	609, 915
BsmFI	GGGAC	2 cut(s)	328, 480
BsnI	GGCC	4 cut(s)	446, 567, 734, 934
Bsp143I	GATC	3 cut(s)	6, 348, 631
Bsp68I	TCGCGA	1 cut(s)	92
BspACI	CCGC	8 cut(s)	12, 29, 282, 285, 288, 354, 432, 790
BspANI	GGCC	4 cut(s)	446, 567, 734, 934
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	2 cut(s)	92, 290
BspHI	TCATGA	1 cut(s)	937
BspLI	GGNNCC	1 cut(s)	316
BspMAI	CTGCAG	2 cut(s)	545, 691
BspMI	ACCTGC	1 cut(s)	952
BspPI	GGATC	1 cut(s)	639
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	4 cut(s)	202, 593, 761, 889
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	4 cut(s)	318, 547, 568, 729
BssMI	GATC	3 cut(s)	6, 348, 631
Bst2UI	CCWGG	4 cut(s)	269, 549, 798, 899
Bst4CI	ACNGT	4 cut(s)	88, 440, 512, 605
BstC8I	GCNNGC	3 cut(s)	61, 246, 987
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	2 cut(s)	318, 568
BstF5I	GGATG	2 cut(s)	643, 708
BstFNI	CGCG	2 cut(s)	92, 290
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	3 cut(s)	40, 244, 292
BstKTI	GATC	3 cut(s)	9, 351, 634
BstMAI	GTCTC	3 cut(s)	609, 747, 915
BstMBI	GATC	3 cut(s)	6, 348, 631
BstMCI	CGRYCG	1 cut(s)	919
BstNI	CCWGG	4 cut(s)	269, 549, 798, 899
BstNSI	RCATGY	2 cut(s)	248, 371
BstSCI	CCNGG	4 cut(s)	267, 547, 796, 897
BstSFI	CTRYAG	2 cut(s)	541, 687
BstUI	CGCG	2 cut(s)	92, 290
BstV1I	GCAGC	6 cut(s)	4, 75, 387, 555, 620, 673
BstX2I	RGATCY	2 cut(s)	6, 631
BstXI	CCANNNNNNTGG	1 cut(s)	465
BstYI	RGATCY	2 cut(s)	6, 631
BsuRI	GGCC	4 cut(s)	446, 567, 734, 934
BtgI	CCRYGG	2 cut(s)	318, 568
BtsCI	GGATG	2 cut(s)	643, 708
BtuMI	TCGCGA	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	952
Cac8I	GCNNGC	3 cut(s)	61, 246, 987
CciI	TCATGA	1 cut(s)	937
CfoI	GCGC	3 cut(s)	40, 244, 292
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	5 cut(s)	315, 455, 733, 901, 932
CseI	GACGC	1 cut(s)	626
Csp6I	GTAC	3 cut(s)	160, 529, 892
CviAII	CATG	5 cut(s)	245, 368, 499, 865, 938
CviQI	GTAC	3 cut(s)	160, 529, 892
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	3 cut(s)	8, 350, 633
DpnII	GATC	3 cut(s)	6, 348, 631
EaeI	YGGCCR	2 cut(s)	444, 565
Eco47I	GGWCC	3 cut(s)	315, 455, 901
EcoO109I	RGGNCCY	1 cut(s)	932
EcoRII	CCWGG	4 cut(s)	267, 547, 796, 897
Esp3I	CGTCTC	2 cut(s)	609, 915
FaeI	CATG	5 cut(s)	248, 371, 502, 868, 941
FaqI	GGGAC	2 cut(s)	328, 480
FatI	CATG	5 cut(s)	244, 367, 498, 864, 937
FokI	GGATG	2 cut(s)	630, 715
GlaI	GCGC	3 cut(s)	39, 243, 291
GsuI	CTGGAG	2 cut(s)	570, 633
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	4 cut(s)	446, 567, 734, 934
HapII	CCGG	2 cut(s)	236, 450
HgaI	GACGC	1 cut(s)	626
HhaI	GCGC	3 cut(s)	40, 244, 292
Hin1II	CATG	5 cut(s)	248, 371, 502, 868, 941
Hin6I	GCGC	3 cut(s)	38, 242, 290
HinP1I	GCGC	3 cut(s)	38, 242, 290
HincII	GTYRAC	1 cut(s)	948
HindII	GTYRAC	1 cut(s)	948
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	211, 493, 833
HpaI	GTTAAC	1 cut(s)	948
HpaII	CCGG	2 cut(s)	236, 450
HphI	GGTGA	4 cut(s)	166, 271, 387, 863
Hpy166II	GTNNAC	2 cut(s)	84, 948
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	7 cut(s)	91, 193, 647, 715, 920, 938, 1005
Hpy8I	GTNNAC	2 cut(s)	84, 948
Hpy99I	CGWCG	2 cut(s)	71, 92
HpyAV	CCTTC	2 cut(s)	337, 619
HpyCH4III	ACNGT	4 cut(s)	88, 440, 512, 605
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	5 cut(s)	248, 371, 502, 868, 941
HspAI	GCGC	3 cut(s)	38, 242, 290
KspAI	GTTAAC	1 cut(s)	948
Kzo9I	GATC	3 cut(s)	6, 348, 631
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	6 cut(s)	4, 75, 387, 555, 620, 673
LweI	GCATC	2 cut(s)	850, 882
MaeIII	GTNAC	5 cut(s)	393, 434, 720, 851, 991
MalI	GATC	3 cut(s)	8, 350, 633
MboI	GATC	3 cut(s)	6, 348, 631
MboII	GAAGA	4 cut(s)	16, 112, 127, 993
MflI	RGATCY	2 cut(s)	6, 631
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	2 cut(s)	417, 598
MluNI	TGGCCA	1 cut(s)	446
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	1 cut(s)	730
MnlI	CCTC	8 cut(s)	102, 312, 394, 446, 690, 739, 919, 945
Mox20I	TGGCCA	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	2 cut(s)	947, 972
MslI	CAYNNNNRTG	2 cut(s)	236, 812
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	2 cut(s)	14, 611
MspI	CCGG	2 cut(s)	236, 450
MspR9I	CCNGG	4 cut(s)	269, 549, 798, 899
MvaI	CCWGG	4 cut(s)	269, 549, 798, 899
MvnI	CGCG	2 cut(s)	92, 290
NdeII	GATC	3 cut(s)	6, 348, 631
NlaIII	CATG	5 cut(s)	248, 371, 502, 868, 941
NlaIV	GGNNCC	1 cut(s)	316
NmeAIII	GCCGAG	2 cut(s)	710, 982
NmuCI	GTSAC	3 cut(s)	393, 720, 851
NruI	TCGCGA	1 cut(s)	92
NspI	RCATGY	2 cut(s)	248, 371
OliI	CACNNNNGTG	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	248
PagI	TCATGA	1 cut(s)	937
PciI	ACATGT	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	921
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	211, 833
PfoI	TCCNGGA	1 cut(s)	796
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
PscI	ACATGT	1 cut(s)	367
Psp6I	CCWGG	4 cut(s)	267, 547, 796, 897
PspGI	CCWGG	4 cut(s)	267, 547, 796, 897
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	5 cut(s)	315, 455, 733, 901, 932
PsrI	GAACNNNNNNTAC	2 cut(s)	584, 616
PstI	CTGCAG	2 cut(s)	545, 691
PsuI	RGATCY	2 cut(s)	6, 631
PvuII	CAGCTG	1 cut(s)	611
RruI	TCGCGA	1 cut(s)	92
RsaI	GTAC	3 cut(s)	161, 530, 893
RsaNI	GTAC	3 cut(s)	160, 529, 892
RseI	CAYNNNNRTG	2 cut(s)	236, 812
SaqAI	TTAA	2 cut(s)	947, 972
Sau3AI	GATC	3 cut(s)	6, 348, 631
Sau96I	GGNCC	5 cut(s)	315, 455, 733, 901, 932
ScaI	AGTACT	2 cut(s)	161, 893
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	4 cut(s)	269, 549, 798, 899
SfaNI	GCATC	2 cut(s)	850, 882
SfcI	CTRYAG	2 cut(s)	541, 687
SgrAI	CRCCGGYG	1 cut(s)	235
SinI	GGWCC	3 cut(s)	315, 455, 901
SmiMI	CAYNNNNRTG	2 cut(s)	236, 812
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	2 cut(s)	417, 598
SsiI	CCGC	8 cut(s)	12, 29, 282, 285, 288, 354, 432, 790
SspI	AATATT	1 cut(s)	820
StyD4I	CCNGG	4 cut(s)	267, 547, 796, 897
TaaI	ACNGT	4 cut(s)	88, 440, 512, 605
TaqI	TCGA	2 cut(s)	297, 919
TaqII	GACCGA	1 cut(s)	905
TasI	AATT	2 cut(s)	417, 598
TatI	WGTACW	3 cut(s)	159, 528, 891
TauI	GCSGC	3 cut(s)	287, 290, 356
TfiI	GAWTC	2 cut(s)	211, 833
Tru1I	TTAA	2 cut(s)	947, 972
Tru9I	TTAA	2 cut(s)	947, 972
TseFI	GTSAC	3 cut(s)	393, 720, 851
TseI	GCWGC	7 cut(s)	14, 17, 63, 375, 543, 608, 686
Tsp45I	GTSAC	3 cut(s)	393, 720, 851
TspDTI	ATGAA	5 cut(s)	17, 356, 830, 881, 954
VpaK11BI	GGWCC	3 cut(s)	315, 455, 901
XceI	RCATGY	2 cut(s)	248, 371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	746
XmnI	GAANNNNTTC	1 cut(s)	215
ZrmI	AGTACT	2 cut(s)	161, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.