Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009909

Physical Location & Seq

Genomic Coordinates Reverse (-)

3371669 .. 3373607

Gene Structure 1939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1030000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAAGATCTCTGCTGCTGCATTGGTGGCGGTGGTGGCGCTGAGTGTTGTCTTTTGTGCCAGCAACGATGGCGATTACTCGTCCACCGTCGTGAAAGTGAAGATTGTGAGGGGGAAGAAGTTGTGCGACAAAGGGTGGGAGTGTAAAGGGTGGTCAAAGTACTGTTGCAATCTCACCATCTCTGATTACTTCCAGACTTACCAGTTTGAGAATCTGTTCTCCAAGAGAAACATACCGGTGGCGCATGCCGTTGGGTTTTGGGATTACCAGGCGTTTATCACCGCCGCAGCGCTTTTCGAGCCTCTTGGGTTTAGGACCACCGGTGGGAAGCTTATGCAGATGAAGGAGATCACCGCCTTTCTTGGACATGTCCGCAGCAAAACCTCCTGCGGTTACGGTGTGGCCACCGGAGGACCATACGCTTGGGGGCTTTGCTACAACAGGGAAATGAGTCCCATGCAGTCATACTGTGATGACTATTACAAGTACATATATCCCTGCAGTCATGGGGCTGAATACTATGGCCGTGGTGCTTTGCCTATCTACTGGAACTACAATTACGGTGCTGCTGGAGATGCTTTGAAGGTGGATCTGTTGAACCATCCAGAATACATTGAGCAGAACGCTACTCTTGCTTTCCAAGCTGCAGTATGGAGGTGGATGACCCCTATCAAGAAGTCACAACCCTCGGCCCACCAAGCATTTGTTGGAGACTGGAAGCCTACCAAGAACGATACCTTGAGTAAGCGGTTTCCTGGATTTGGCACTACAATGAATATTCTTTATGGGGAATCAGTTTGTGGCAAGGGTGACATTGATGCCATGAACAACATCGTTTCACATTACCAGTACTACCTGGACCTTATGGGTGTCGGTCGAGACGAGGCAGGGCCTCATAAAGTGTTAACTTGTGCCGAGCAGGTTGCATTTAACCCAATCCAGCCTGCTGTTACTGCATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009825 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010053 GO:0010167 GO:0010337 GO:0010565 GO:0010817 GO:0012505 GO:0016049 GO:0016051 GO:0019222 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0030246 GO:0030247 GO:0031323 GO:0032350 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051273 GO:0051274 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_19

Protein Analysis

322

Amino Acids

35.7

Weight (kDa)

8.37

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	68 - 295	1.1e-60	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05850 AT1G05850
fragaria_vesca	FvH4_4g11930
malus_domestica	MD04G1029400.v1.1 MD04G1030000.v1.1 MD04G1030300.v1.1 MD13G1278500.v1.1
prunus_persica	Prupe.1G179800_v2.0.a1
pyrus_communis	pycom04g02550
rosa_chinensis	RchiOBHm_Chr4g0409551
rosa_laevigata	RLG00000008556
rosa_multiflora	Rmu_sc0000647.1_g000016 Rmu_sc0001616.1_g000011
rosa_roxburghii	Rroxscaffold_5G00354020
rosa_rugosa	Rorug04G0094500
rosa_samantha	Rh4AG156500 Rh4BG155800 Rh4CG166100 Rh4DG149800
rosa_wichuraiana	Rw0G023420 Rw4G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	910
AciI	CCGC	7 cut(s)	29, 282, 285, 354, 373, 390, 748
AclWI	GGATC	1 cut(s)	597
AcoI	YGGCCR	2 cut(s)	402, 523
AfaI	GTAC	3 cut(s)	161, 488, 851
AfeI	AGCGCT	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	324, 761
AflIII	ACRYGT	1 cut(s)	367
AgeI	ACCGGT	2 cut(s)	235, 320
AgsI	TTSAA	2 cut(s)	583, 598
AjnI	CCWGG	3 cut(s)	267, 754, 855
AleI	CACNNNNGTG	1 cut(s)	89
AluBI	AGCT	2 cut(s)	331, 644
AluI	AGCT	2 cut(s)	331, 644
Alw26I	GTCTC	2 cut(s)	705, 873
AlwI	GGATC	1 cut(s)	597
Aor51HI	AGCGCT	1 cut(s)	291
AoxI	GGCC	4 cut(s)	402, 523, 690, 890
ApeKI	GCWGC	6 cut(s)	14, 17, 287, 375, 566, 644
AsiGI	ACCGGT	2 cut(s)	235, 320
Asp700I	GAANNNNTTC	1 cut(s)	215
AspLEI	GCGC	3 cut(s)	40, 244, 292
AspS9I	GGNCC	5 cut(s)	315, 413, 691, 859, 890
AsuHPI	GGTGA	4 cut(s)	166, 271, 343, 821
AvaII	GGWCC	3 cut(s)	315, 413, 859
BalI	TGGCCA	1 cut(s)	404
BbvI	GCAGC	5 cut(s)	4, 299, 387, 553, 631
BccI	CCATC	3 cut(s)	62, 185, 609
BceAI	ACGGC	2 cut(s)	233, 510
BcgI	CGANNNNNNTGC	2 cut(s)	905, 939
BciT130I	CCWGG	3 cut(s)	269, 756, 857
BcoDI	GTCTC	2 cut(s)	705, 873
BfmI	CTRYAG	2 cut(s)	499, 645
BfoI	RGCGCY	2 cut(s)	41, 293
BfuAI	ACCTGC	1 cut(s)	910
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	7 cut(s)	15, 18, 285, 288, 376, 567, 645
BlsI	GCNGC	7 cut(s)	16, 19, 286, 289, 377, 568, 646
BmcAI	AGTACT	2 cut(s)	161, 851
Bme1390I	CCNGG	3 cut(s)	269, 756, 857
Bme18I	GGWCC	3 cut(s)	315, 413, 859
BmgT120I	GGNCC	5 cut(s)	315, 413, 691, 859, 890
BmrFI	CCNGG	3 cut(s)	269, 756, 857
BmsI	GCATC	2 cut(s)	565, 808
BpmI	CTGGAG	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	760
BsaJI	CCNNGG	2 cut(s)	526, 687
BsaWI	WCCGGW	3 cut(s)	235, 320, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 761
Bse118I	RCCGGY	2 cut(s)	235, 320
Bse1I	ACTGG	4 cut(s)	202, 551, 719, 847
BseBI	CCWGG	3 cut(s)	269, 756, 857
BseDI	CCNNGG	2 cut(s)	526, 687
BseGI	GGATG	2 cut(s)	601, 666
BseLI	CCNNNNNNNGG	2 cut(s)	324, 761
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	4 cut(s)	202, 551, 719, 847
BseXI	GCAGC	5 cut(s)	4, 299, 387, 553, 631
Bsh1285I	CGRYCG	1 cut(s)	877
BshFI	GGCC	4 cut(s)	404, 525, 692, 892
BshTI	ACCGGT	2 cut(s)	235, 320
BsiEI	CGRYCG	1 cut(s)	877
BsiSI	CCGG	3 cut(s)	236, 321, 408
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	324, 761
BsmAI	GTCTC	2 cut(s)	705, 873
BsmBI	CGTCTC	1 cut(s)	873
BsmFI	GGGAC	1 cut(s)	438
BsnI	GGCC	4 cut(s)	404, 525, 692, 892
Bsp143I	GATC	3 cut(s)	6, 348, 589
BspACI	CCGC	7 cut(s)	29, 282, 285, 354, 373, 390, 748
BspANI	GGCC	4 cut(s)	404, 525, 692, 892
BspCNI	CTCAG	1 cut(s)	33
BspMAI	CTGCAG	2 cut(s)	503, 649
BspMI	ACCTGC	1 cut(s)	910
BspPI	GGATC	1 cut(s)	597
BsrFI	RCCGGY	2 cut(s)	235, 320
BsrI	ACTGG	4 cut(s)	202, 551, 719, 847
BssAI	RCCGGY	2 cut(s)	235, 320
BssECI	CCNNGG	2 cut(s)	526, 687
BssMI	GATC	3 cut(s)	6, 348, 589
Bst2UI	CCWGG	3 cut(s)	269, 756, 857
Bst4CI	ACNGT	5 cut(s)	88, 164, 398, 470, 563
BstC8I	GCNNGC	3 cut(s)	61, 246, 945
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	2 cut(s)	601, 666
BstH2I	RGCGCY	2 cut(s)	41, 293
BstHHI	GCGC	3 cut(s)	40, 244, 292
BstKTI	GATC	3 cut(s)	9, 351, 592
BstMAI	GTCTC	2 cut(s)	705, 873
BstMBI	GATC	3 cut(s)	6, 348, 589
BstMCI	CGRYCG	1 cut(s)	877
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 35, 69, 298, 575, 632, 641, 698, 953
BstNI	CCWGG	3 cut(s)	269, 756, 857
BstNSI	RCATGY	2 cut(s)	248, 371
BstSCI	CCNGG	3 cut(s)	267, 754, 855
BstSFI	CTRYAG	2 cut(s)	499, 645
BstV1I	GCAGC	5 cut(s)	4, 299, 387, 553, 631
BstX2I	RGATCY	2 cut(s)	6, 589
BstXI	CCANNNNNNTGG	1 cut(s)	423
BstYI	RGATCY	2 cut(s)	6, 589
BsuRI	GGCC	4 cut(s)	404, 525, 692, 892
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	2 cut(s)	601, 666
BveI	ACCTGC	1 cut(s)	910
Cac8I	GCNNGC	3 cut(s)	61, 246, 945
CfoI	GCGC	3 cut(s)	40, 244, 292
Cfr10I	RCCGGY	2 cut(s)	235, 320
Cfr13I	GGNCC	5 cut(s)	315, 413, 691, 859, 890
Csp6I	GTAC	3 cut(s)	160, 487, 850
CspAI	ACCGGT	2 cut(s)	235, 320
CviAII	CATG	5 cut(s)	245, 368, 457, 506, 823
CviQI	GTAC	3 cut(s)	160, 487, 850
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	3 cut(s)	8, 350, 591
DpnII	GATC	3 cut(s)	6, 348, 589
EaeI	YGGCCR	2 cut(s)	402, 523
Eco47I	GGWCC	3 cut(s)	315, 413, 859
Eco47III	AGCGCT	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	890
EcoRII	CCWGG	3 cut(s)	267, 754, 855
Esp3I	CGTCTC	1 cut(s)	873
FaeI	CATG	5 cut(s)	248, 371, 460, 509, 826
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	5 cut(s)	244, 367, 456, 505, 822
Fnu4HI	GCNGC	7 cut(s)	15, 18, 285, 288, 376, 567, 645
FokI	GGATG	2 cut(s)	588, 673
Fsp4HI	GCNGC	7 cut(s)	15, 18, 285, 288, 376, 567, 645
GlaI	GCGC	3 cut(s)	39, 243, 291
GluI	GCNGC	7 cut(s)	15, 18, 285, 288, 376, 567, 645
GsuI	CTGGAG	1 cut(s)	591
HaeII	RGCGCY	2 cut(s)	41, 293
HaeIII	GGCC	4 cut(s)	404, 525, 692, 892
HapII	CCGG	3 cut(s)	236, 321, 408
HhaI	GCGC	3 cut(s)	40, 244, 292
Hin1II	CATG	5 cut(s)	248, 371, 460, 509, 826
Hin6I	GCGC	3 cut(s)	38, 242, 290
HinP1I	GCGC	3 cut(s)	38, 242, 290
HincII	GTYRAC	1 cut(s)	906
HindII	GTYRAC	1 cut(s)	906
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	211, 451, 791
HpaI	GTTAAC	1 cut(s)	906
HpaII	CCGG	3 cut(s)	236, 321, 408
HphI	GGTGA	4 cut(s)	166, 271, 343, 821
Hpy166II	GTNNAC	2 cut(s)	84, 906
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	6 cut(s)	91, 193, 605, 673, 878, 963
Hpy8I	GTNNAC	2 cut(s)	84, 906
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	337, 577
HpyCH4III	ACNGT	5 cut(s)	88, 164, 398, 470, 563
HpyCH4V	TGCA	8 cut(s)	20, 168, 337, 460, 501, 647, 926, 956
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 35, 69, 298, 575, 632, 641, 698, 953
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	5 cut(s)	248, 371, 460, 509, 826
HspAI	GCGC	3 cut(s)	38, 242, 290
KspAI	GTTAAC	1 cut(s)	906
Kzo9I	GATC	3 cut(s)	6, 348, 589
Lsp1109I	GCAGC	5 cut(s)	4, 299, 387, 553, 631
LweI	GCATC	2 cut(s)	565, 808
MaeIII	GTNAC	4 cut(s)	392, 678, 809, 949
MalI	GATC	3 cut(s)	8, 350, 591
MboI	GATC	3 cut(s)	6, 348, 589
MboII	GAAGA	4 cut(s)	16, 112, 127, 951
MflI	RGATCY	2 cut(s)	6, 589
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	1 cut(s)	556
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	460
MmeI	TCCRAC	1 cut(s)	688
MnlI	CCTC	8 cut(s)	102, 312, 394, 404, 648, 697, 877, 903
Mox20I	TGGCCA	1 cut(s)	404
MroXI	GAANNNNTTC	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	2 cut(s)	905, 930
MslI	CAYNNNNRTG	3 cut(s)	89, 236, 770
Msp20I	TGGCCA	1 cut(s)	404
MspI	CCGG	3 cut(s)	236, 321, 408
MspR9I	CCNGG	3 cut(s)	269, 756, 857
MvaI	CCWGG	3 cut(s)	269, 756, 857
MwoI	GCNNNNNNNGC	9 cut(s)	26, 35, 69, 298, 575, 632, 641, 698, 953
NdeII	GATC	3 cut(s)	6, 348, 589
NlaIII	CATG	5 cut(s)	248, 371, 460, 509, 826
NmeAIII	GCCGAG	2 cut(s)	668, 940
NmuCI	GTSAC	2 cut(s)	678, 809
NspI	RCATGY	2 cut(s)	248, 371
OliI	CACNNNNGTG	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	248
PciI	ACATGT	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	879
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	211, 791
PfoI	TCCNGGA	1 cut(s)	754
PinAI	ACCGGT	2 cut(s)	235, 320
PkrI	GCNGC	7 cut(s)	16, 19, 286, 289, 377, 568, 646
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
PscI	ACATGT	1 cut(s)	367
Psp6I	CCWGG	3 cut(s)	267, 754, 855
PspGI	CCWGG	3 cut(s)	267, 754, 855
PspPI	GGNCC	5 cut(s)	315, 413, 691, 859, 890
PsrI	GAACNNNNNNTAC	2 cut(s)	542, 574
PstI	CTGCAG	2 cut(s)	503, 649
PsuI	RGATCY	2 cut(s)	6, 589
RsaI	GTAC	3 cut(s)	161, 488, 851
RsaNI	GTAC	3 cut(s)	160, 487, 850
RseI	CAYNNNNRTG	3 cut(s)	89, 236, 770
SaqAI	TTAA	2 cut(s)	905, 930
SatI	GCNGC	7 cut(s)	15, 18, 285, 288, 376, 567, 645
Sau3AI	GATC	3 cut(s)	6, 348, 589
Sau96I	GGNCC	5 cut(s)	315, 413, 691, 859, 890
ScaI	AGTACT	2 cut(s)	161, 851
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	3 cut(s)	269, 756, 857
SetI	ASST	9 cut(s)	333, 386, 588, 646, 659, 740, 858, 864, 924
SfaNI	GCATC	2 cut(s)	565, 808
SfcI	CTRYAG	2 cut(s)	499, 645
SgrAI	CRCCGGYG	1 cut(s)	320
SinI	GGWCC	3 cut(s)	315, 413, 859
SmiMI	CAYNNNNRTG	3 cut(s)	89, 236, 770
SmlI	CTYRAG	1 cut(s)	739
SmoI	CTYRAG	1 cut(s)	739
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	1 cut(s)	556
SsiI	CCGC	7 cut(s)	29, 282, 285, 354, 373, 390, 748
SspI	AATATT	1 cut(s)	778
StyD4I	CCNGG	3 cut(s)	267, 754, 855
TaaI	ACNGT	5 cut(s)	88, 164, 398, 470, 563
TaqI	TCGA	2 cut(s)	297, 877
TaqII	GACCGA	1 cut(s)	863
TasI	AATT	1 cut(s)	556
TatI	WGTACW	3 cut(s)	159, 486, 849
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	211, 791
Tru1I	TTAA	2 cut(s)	905, 930
Tru9I	TTAA	2 cut(s)	905, 930
TseFI	GTSAC	2 cut(s)	678, 809
TseI	GCWGC	6 cut(s)	14, 17, 287, 375, 566, 644
Tsp45I	GTSAC	2 cut(s)	678, 809
TspDTI	ATGAA	4 cut(s)	17, 356, 788, 839
VpaK11BI	GGWCC	3 cut(s)	315, 413, 859
XceI	RCATGY	2 cut(s)	248, 371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	704
XmnI	GAANNNNTTC	1 cut(s)	215
ZrmI	AGTACT	2 cut(s)	161, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.