FvH4_4g11930

Chitinase-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
15646303 .. 15649212
2910 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11930.t1

Sequence Viewer

Length: 972 bp
ATGAAGCCCTCTTCGTTGGTCTCCGCGGCCGCGCTCGCGGTGGTGGTCCTCCTCAGCGTAGCCTCCGTGCAGGCCGCCTTCGACGACCAGGTCTCGGCGACGCCGGCGCTGGTCAAGAAGGTCAAAGGAAAGAAGGTGTGCGACAAAGGGTGGGAGTGTAAGGGATGGTCTCAGTACTGTTGCAATCTCACCATCACTGATTTCTTCCAGACTTACCAGTTCGAGGAGCTTTTCTCCAACCGGAACGCGCCCGTGGCTCACGCCGTTGGGTTCTGGGACTACAAGTCCTTTATTCTCGCCGCATCGCTTTTTCAGCCTCAGGGGTTTTGCACCACCGGCGGGAAGCTTATGCAGATGAAGGAGCTCGCAGCTTTCCTCGGACATGTCGGCAGCAAGACCTCTTGTGGTTACGGTGTGGCCACTGGAGGACCGTTGGCCTGGGGACTTTGCTATAACAGGGAAATGAGTCCCATGCAGTCATACTGTGATGACTTCTACAAATACACATATCCTTGCACTCCTGGAGCTGAATACTACGGTCGCGGAGCTTTGCCTATTTACTGGAACTACAATTACGGTGCAGCTGGGGAAGCATTGAAGGTTGATCTGTTGAATCATCCAGAATATATTGAGCAGAATGCTACTCTTGCCTTCCAGGCTGCAATATGGAGGTGGATGACTCCTATCAAGAAGTCACAACCCTCAGCCCATGAAGCATTTGTTGGCACTTGGAAGCCCACCAAGAATGATACGGAGTCCAAGCGGTTTCCTGGATTTGGCACAACAATGAATGTTTTATATGGGGATGGAGTTTGTGGCCAGGGTGACATTGACGCCATGAACAACATCGTTTCCCATTACCAGTATTACCTTGACCTTATGGGTGTTGGTCGTGAGGAAGCAGGTCCTCATGAAGTACTAACTTGTGCTGAGCAGCTTGCATTTAATCCGATTACCCAAGCATCTTCTTGA

Protein Analysis

324

Amino Acids

35.54

Weight (kDa)

6.08

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 73 - 299 1.5e-59 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
Acc36I ACCTGC 1 cut(s) 893
AccII CGCG 5 cut(s) 26, 32, 38, 248, 543
AciI CCGC 9 cut(s) 24, 26, 30, 38, 75, 300, 339, 543, 763
AcoI YGGCCR 3 cut(s) 27, 417, 817
AcyI GRCGYC 2 cut(s) 101, 834
AfaI GTAC 2 cut(s) 176, 918
AfiI CCNNNNNNNGG 4 cut(s) 94, 223, 339, 776
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 2 cut(s) 598, 613
AhdI GACNNNNNGTC 1 cut(s) 283
AjnI CCWGG 6 cut(s) 87, 437, 520, 654, 769, 819
AjuI GAANNNNNNNTTGG 2 cut(s) 705, 737
AluBI AGCT 8 cut(s) 229, 346, 364, 371, 527, 548, 584, 937
AluI AGCT 8 cut(s) 229, 346, 364, 371, 527, 548, 584, 937
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 3 cut(s) 25, 97, 174
AoxI GGCC 5 cut(s) 27, 72, 417, 435, 817
ApeKI GCWGC 5 cut(s) 368, 390, 581, 659, 934
AspLEI GCGC 3 cut(s) 34, 109, 250
AspS9I GGNCC 3 cut(s) 46, 428, 905
AsuHPI GGTGA 2 cut(s) 181, 836
AvaII GGWCC 3 cut(s) 46, 428, 905
AxyI CCTNAGG 1 cut(s) 318
BalI TGGCCA 2 cut(s) 419, 819
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 366
BbvCI CCTCAGC 2 cut(s) 53, 703
BbvI GCAGC 5 cut(s) 380, 402, 593, 646, 946
BccI CCATC 3 cut(s) 159, 200, 800
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 6 cut(s) 89, 439, 522, 656, 771, 821
BcoDI GTCTC 3 cut(s) 25, 97, 174
BfoI RGCGCY 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 893
BglI GCCNNNNNGGC 1 cut(s) 656
BisI GCNGC 9 cut(s) 27, 30, 75, 300, 369, 391, 582, 660, 935
BlpI GCTNAGC 1 cut(s) 930
BlsI GCNGC 9 cut(s) 28, 31, 76, 301, 370, 392, 583, 661, 936
BmcAI AGTACT 2 cut(s) 176, 918
Bme1390I CCNGG 6 cut(s) 89, 439, 522, 656, 771, 821
Bme18I GGWCC 3 cut(s) 46, 428, 905
BmeRI GACNNNNNGTC 1 cut(s) 283
BmgT120I GGNCC 3 cut(s) 46, 428, 905
BmrFI CCNGG 6 cut(s) 89, 439, 522, 656, 771, 821
BmsI GCATC 1 cut(s) 311
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpmI CTGGAG 2 cut(s) 444, 543
Bpu10I CCTNAGC 2 cut(s) 53, 703
Bpu1102I GCTNAGC 1 cut(s) 930
BsaHI GRCGYC 2 cut(s) 101, 834
BsaI GGTCTC 3 cut(s) 25, 97, 174
BsaJI CCNNGG 5 cut(s) 24, 252, 376, 438, 820
BsaWI WCCGGW 1 cut(s) 240
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 223, 339, 776
Bse118I RCCGGY 2 cut(s) 103, 335
Bse1I ACTGG 4 cut(s) 217, 427, 566, 862
Bse21I CCTNAGG 1 cut(s) 318
BseBI CCWGG 6 cut(s) 89, 439, 522, 656, 771, 821
BseDI CCNNGG 5 cut(s) 24, 252, 376, 438, 820
BseGI GGATG 4 cut(s) 170, 616, 681, 811
BseLI CCNNNNNNNGG 4 cut(s) 94, 223, 339, 776
BseMII CTCAG 5 cut(s) 67, 185, 332, 717, 921
BseNI ACTGG 4 cut(s) 217, 427, 566, 862
BseRI GAGGAG 2 cut(s) 41, 239
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 5 cut(s) 380, 402, 593, 646, 946
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 2 cut(s) 89, 600
Bsh1236I CGCG 5 cut(s) 26, 32, 38, 248, 543
Bsh1285I CGRYCG 2 cut(s) 30, 541
BshFI GGCC 5 cut(s) 29, 74, 419, 437, 819
BsiEI CGRYCG 2 cut(s) 30, 541
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 3 cut(s) 104, 241, 336
BslFI GGGAC 3 cut(s) 290, 453, 456
BslI CCNNNNNNNGG 4 cut(s) 94, 223, 339, 776
BsmAI GTCTC 3 cut(s) 25, 97, 174
BsmFI GGGAC 3 cut(s) 290, 453, 456
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 5 cut(s) 29, 74, 419, 437, 819
Bso31I GGTCTC 3 cut(s) 25, 97, 174
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 1 cut(s) 604
Bsp1720I GCTNAGC 1 cut(s) 930
BspACI CCGC 9 cut(s) 24, 26, 30, 38, 75, 300, 339, 543, 763
BspANI GGCC 5 cut(s) 29, 74, 419, 437, 819
BspCNI CTCAG 5 cut(s) 66, 184, 331, 716, 922
BspFNI CGCG 5 cut(s) 26, 32, 38, 248, 543
BspHI TCATGA 1 cut(s) 910
BspMI ACCTGC 1 cut(s) 893
BspTNI GGTCTC 3 cut(s) 25, 97, 174
BsrFI RCCGGY 2 cut(s) 103, 335
BsrI ACTGG 4 cut(s) 217, 427, 566, 862
BssAI RCCGGY 2 cut(s) 103, 335
BssECI CCNNGG 5 cut(s) 24, 252, 376, 438, 820
BssMI GATC 1 cut(s) 604
BssNI GRCGYC 2 cut(s) 101, 834
Bst2UI CCWGG 6 cut(s) 89, 439, 522, 656, 771, 821
Bst4CI ACNGT 6 cut(s) 179, 413, 432, 485, 539, 578
Bst6I CTCTTC 1 cut(s) 16
BstACI GRCGYC 2 cut(s) 101, 834
BstC8I GCNNGC 5 cut(s) 36, 72, 105, 366, 939
BstDEI CTNAG 5 cut(s) 53, 171, 318, 703, 930
BstDSI CCRYGG 2 cut(s) 24, 252
BstF5I GGATG 4 cut(s) 170, 616, 681, 811
BstFNI CGCG 5 cut(s) 26, 32, 38, 248, 543
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 3 cut(s) 34, 109, 250
BstKTI GATC 1 cut(s) 607
BstMAI GTCTC 3 cut(s) 25, 97, 174
BstMBI GATC 1 cut(s) 604
BstMCI CGRYCG 2 cut(s) 30, 541
BstMWI GCNNNNNNNGC 9 cut(s) 35, 104, 254, 313, 336, 590, 647, 656, 713
BstNI CCWGG 6 cut(s) 89, 439, 522, 656, 771, 821
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 6 cut(s) 87, 437, 520, 654, 769, 819
BstUI CGCG 5 cut(s) 26, 32, 38, 248, 543
BstV1I GCAGC 5 cut(s) 380, 402, 593, 646, 946
BstZI CGGCCG 1 cut(s) 27
Bsu36I CCTNAGG 1 cut(s) 318
BsuRI GGCC 5 cut(s) 29, 74, 419, 437, 819
BtgI CCRYGG 2 cut(s) 24, 252
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 4 cut(s) 170, 616, 681, 811
BtsIMutI CAGTG 2 cut(s) 195, 420
BveI ACCTGC 1 cut(s) 893
Cac8I GCNNGC 5 cut(s) 36, 72, 105, 366, 939
CciI TCATGA 1 cut(s) 910
CciNI GCGGCCGC 1 cut(s) 27
CfoI GCGC 3 cut(s) 34, 109, 250
Cfr10I RCCGGY 2 cut(s) 103, 335
Cfr13I GGNCC 3 cut(s) 46, 428, 905
Cfr42I CCGCGG 1 cut(s) 27
CseI GACGC 2 cut(s) 109, 842
CsiI ACCWGGT 1 cut(s) 87
Csp6I GTAC 2 cut(s) 175, 917
CviAII CATG 5 cut(s) 383, 472, 710, 838, 911
CviQI GTAC 2 cut(s) 175, 917
DdeI CTNAG 5 cut(s) 53, 171, 318, 703, 930
DpnI GATC 1 cut(s) 606
DpnII GATC 1 cut(s) 604
DrdI GACNNNNNNGTC 1 cut(s) 89
DriI GACNNNNNGTC 1 cut(s) 283
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 3 cut(s) 27, 417, 817
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 16
Eam1105I GACNNNNNGTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 364
EclXI CGGCCG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 366
Eco31I GGTCTC 3 cut(s) 25, 97, 174
Eco47I GGWCC 3 cut(s) 46, 428, 905
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 364
Eco81I CCTNAGG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 905
EcoRII CCWGG 6 cut(s) 87, 437, 520, 654, 769, 819
EcoT38I GRGCYC 1 cut(s) 366
FaeI CATG 5 cut(s) 386, 475, 713, 841, 914
FaqI GGGAC 3 cut(s) 290, 453, 456
FatI CATG 5 cut(s) 382, 471, 709, 837, 910
FauI CCCGC 1 cut(s) 332
Fnu4HI GCNGC 9 cut(s) 27, 30, 75, 300, 369, 391, 582, 660, 935
FokI GGATG 4 cut(s) 177, 603, 688, 818
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 9 cut(s) 27, 30, 75, 300, 369, 391, 582, 660, 935
GlaI GCGC 3 cut(s) 33, 108, 249
GluI GCNGC 9 cut(s) 27, 30, 75, 300, 369, 391, 582, 660, 935
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 2 cut(s) 444, 543
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 5 cut(s) 29, 74, 419, 437, 819
HapII CCGG 3 cut(s) 104, 241, 336
HgaI GACGC 2 cut(s) 109, 842
HhaI GCGC 3 cut(s) 34, 109, 250
Hin1I GRCGYC 2 cut(s) 101, 834
Hin1II CATG 5 cut(s) 386, 475, 713, 841, 914
Hin6I GCGC 3 cut(s) 32, 107, 248
HinP1I GCGC 3 cut(s) 32, 107, 248
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 4 cut(s) 466, 613, 679, 755
HpaII CCGG 3 cut(s) 104, 241, 336
HphI GGTGA 2 cut(s) 181, 836
Hpy188I TCNGA 2 cut(s) 380, 951
Hpy188III TCNNGA 7 cut(s) 115, 208, 620, 688, 893, 911, 969
Hpy99I CGWCG 2 cut(s) 86, 103
HpyAV CCTTC 6 cut(s) 88, 112, 127, 352, 592, 661
HpyCH4III ACNGT 6 cut(s) 179, 413, 432, 485, 539, 578
HpyCH4V TGCA 9 cut(s) 70, 183, 330, 352, 475, 516, 581, 662, 941
HpyF10VI GCNNNNNNNGC 9 cut(s) 35, 104, 254, 313, 336, 590, 647, 656, 713
HpyF3I CTNAG 5 cut(s) 53, 171, 318, 703, 930
Hsp92I GRCGYC 2 cut(s) 101, 834
Hsp92II CATG 5 cut(s) 386, 475, 713, 841, 914
HspAI GCGC 3 cut(s) 32, 107, 248
KroI GCCGGC 1 cut(s) 103
KroNI GCCGGC 1 cut(s) 105
KspI CCGCGG 1 cut(s) 27
Kzo9I GATC 1 cut(s) 604
LmnI GCTCC 4 cut(s) 226, 361, 524, 545
Lsp1109I GCAGC 5 cut(s) 380, 402, 593, 646, 946
LweI GCATC 1 cut(s) 311
MabI ACCWGGT 1 cut(s) 87
MaeIII GTNAC 3 cut(s) 407, 693, 824
MalI GATC 1 cut(s) 606
MboI GATC 1 cut(s) 604
MboII GAAGA 3 cut(s) 3, 196, 957
MhlI GDGCHC 1 cut(s) 366
MlsI TGGCCA 2 cut(s) 419, 819
MluCI AATT 1 cut(s) 571
MluNI TGGCCA 2 cut(s) 419, 819
MlyI GAGTC 3 cut(s) 475, 673, 764
MmeI TCCRAC 1 cut(s) 261
Mox20I TGGCCA 2 cut(s) 419, 819
MreI CGCCGGCG 1 cut(s) 103
MroNI GCCGGC 1 cut(s) 103
MscI TGGCCA 2 cut(s) 419, 819
MseI TTAA 1 cut(s) 945
MslI CAYNNNNRTG 1 cut(s) 785
Msp20I TGGCCA 2 cut(s) 419, 819
MspA1I CMGCKG 2 cut(s) 26, 584
MspI CCGG 3 cut(s) 104, 241, 336
MspR9I CCNGG 6 cut(s) 89, 439, 522, 656, 771, 821
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 6 cut(s) 89, 439, 522, 656, 771, 821
MvnI CGCG 5 cut(s) 26, 32, 38, 248, 543
MwoI GCNNNNNNNGC 9 cut(s) 35, 104, 254, 313, 336, 590, 647, 656, 713
NaeI GCCGGC 1 cut(s) 105
NdeII GATC 1 cut(s) 604
NgoMIV GCCGGC 1 cut(s) 103
NlaIII CATG 5 cut(s) 386, 475, 713, 841, 914
NmeAIII GCCGAG 1 cut(s) 74
NmuCI GTSAC 2 cut(s) 693, 824
NotI GCGGCCGC 1 cut(s) 27
NspI RCATGY 1 cut(s) 386
PagI TCATGA 1 cut(s) 910
PciI ACATGT 1 cut(s) 382
PctI GAATGC 1 cut(s) 643
PdiI GCCGGC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 613
PflFI GACNNNGTC 1 cut(s) 89
PfoI TCCNGGA 2 cut(s) 520, 769
PkrI GCNGC 9 cut(s) 28, 31, 76, 301, 370, 392, 583, 661, 936
PleI GAGTC 3 cut(s) 474, 673, 763
PpsI GAGTC 3 cut(s) 474, 673, 763
PpuMI RGGWCCY 1 cut(s) 905
PscI ACATGT 1 cut(s) 382
Psp124BI GAGCTC 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 905
Psp6I CCWGG 6 cut(s) 87, 437, 520, 654, 769, 819
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 6 cut(s) 87, 437, 520, 654, 769, 819
PspPI GGNCC 3 cut(s) 46, 428, 905
PspPPI RGGWCCY 1 cut(s) 905
PsrI GAACNNNNNNTAC 2 cut(s) 557, 589
PsyI GACNNNGTC 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 2 cut(s) 176, 918
RsaNI GTAC 2 cut(s) 175, 917
RseI CAYNNNNRTG 1 cut(s) 785
SacI GAGCTC 1 cut(s) 366
SacII CCGCGG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 945
SatI GCNGC 9 cut(s) 27, 30, 75, 300, 369, 391, 582, 660, 935
Sau3AI GATC 1 cut(s) 604
Sau96I GGNCC 3 cut(s) 46, 428, 905
ScaI AGTACT 2 cut(s) 176, 918
SchI GAGTC 3 cut(s) 475, 673, 764
ScrFI CCNGG 6 cut(s) 89, 439, 522, 656, 771, 821
SduI GDGCHC 1 cut(s) 366
SexAI ACCWGGT 1 cut(s) 87
SfaNI GCATC 1 cut(s) 311
Sfr303I CCGCGG 1 cut(s) 27
SgrAI CRCCGGYG 2 cut(s) 103, 335
SgrBI CCGCGG 1 cut(s) 27
SinI GGWCC 3 cut(s) 46, 428, 905
SmiMI CAYNNNNRTG 1 cut(s) 785
Sse9I AATT 1 cut(s) 571
SsiI CCGC 9 cut(s) 24, 26, 30, 38, 75, 300, 339, 543, 763
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 6 cut(s) 87, 437, 520, 654, 769, 819
TaaI ACNGT 6 cut(s) 179, 413, 432, 485, 539, 578
TaqI TCGA 2 cut(s) 81, 222
TasI AATT 1 cut(s) 571
TatI WGTACW 2 cut(s) 174, 916
TauI GCSGC 4 cut(s) 29, 32, 77, 302
TfiI GAWTC 1 cut(s) 613
Tru1I TTAA 1 cut(s) 945
Tru9I TTAA 1 cut(s) 945
TscAI CASTG 2 cut(s) 202, 427
TseFI GTSAC 2 cut(s) 693, 824
TseI GCWGC 5 cut(s) 368, 390, 581, 659, 934
Tsp45I GTSAC 2 cut(s) 693, 824
TspDTI ATGAA 6 cut(s) 17, 371, 726, 803, 854, 927
TspGWI ACGGA 2 cut(s) 55, 767
TspRI CASTG 2 cut(s) 202, 427
Tth111I GACNNNGTC 1 cut(s) 89
VpaK11BI GGWCC 3 cut(s) 46, 428, 905
XceI RCATGY 1 cut(s) 386
ZrmI AGTACT 2 cut(s) 176, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.