Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009909

Physical Location & Seq

Genomic Coordinates Forward (+)

29961515 .. 29964248

Gene Structure 2734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG149800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAAGACCTCTCCGTTGGTGTCCGCGGCGGCGTTGGCGGCGGTGGTTCTGCTCAGCGTACTATGCGTGAATGCCTTCGACGACCAGGTGTCGGCGACCCCGACGCTGGTGAAGAAGGTCAAAGGAAAGAAGGTGTGCGACAAAGGGTGGGAGTGTAAGGGGTGGTCACAGTACTGTTGCAATCTCACCATTACCGATGTCTTCCAGACCTACCAATTCGAGGAGCTCTTCAAAAACCGGAACGCGCCGGTGGCTCACGCCGTTGGATTCTGGGACTTCCAGTCCTTCATTCTCGCCGCCGCGGTTTTCGAGCCACAAGGGTTTTGCACCACCGGCGGGAAGCTTATGCAGATGAAGGAGCTCGCCGCTTTTCTCGGACACGTCGGCAGCAAGACCTCTTGTGGATACGGTGTGGCCACTGGAGGACCATTGGCATGGGGACTTTGCTATAACAGGGAAATGAGTCCCATGCAGTCATACTGTGATGACTTCTACAAATACACATACCCCTGCTCTCCTGGAGCTGACTACTACGGTCGTGGTGCTTTGCCTATCTACTGGAACTACAATTACGGTGCAGCTGGGGAAGCATTGAAGGTTGATCTGTTGAACCATCCAGAATACATTGAGCAGAATGCTACTCTTGCCTTCCAGGCTGCCATATGGAGGTGGATGACTCCTATCAAGAAATCGCAACCCTCAGCCCATGAAGCATTCGTTGGCACTTGGAAGCCTACCAAGAATGACACATTGTCCAAGCGATTTCCTGGATTTGGCGCAACAATGAATATTCTATATGGGGAGCAAGTTTGTGGCCAGGGCGACATTGATGCCATGAACAACATCGTTTCCCATTACCAGTATTACCTCGACCTTTTGGGTGTTGGTCGTGAGGAAGCAGGTCCCCATGAAGTGCTAACTTGTGCTGAGCAGCTTGCATTTAATCCAATTACCAAAGCATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009825 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010053 GO:0010167 GO:0010337 GO:0010565 GO:0010817 GO:0012505 GO:0016049 GO:0016051 GO:0019222 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0030246 GO:0030247 GO:0031323 GO:0032350 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051273 GO:0051274 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_19

Protein Analysis

322

Amino Acids

35.49

Weight (kDa)

6.31

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	71 - 298	2.3e-60	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05850 AT1G05850
fragaria_vesca	FvH4_4g11930
malus_domestica	MD04G1029400.v1.1 MD04G1030000.v1.1 MD04G1030300.v1.1 MD13G1278500.v1.1
prunus_persica	Prupe.1G179800_v2.0.a1
pyrus_communis	pycom04g02550
rosa_chinensis	RchiOBHm_Chr4g0409551
rosa_laevigata	RLG00000008556
rosa_multiflora	Rmu_sc0000647.1_g000016 Rmu_sc0001616.1_g000011
rosa_roxburghii	Rroxscaffold_5G00354020
rosa_rugosa	Rorug04G0094500
rosa_samantha	Rh4AG156500 Rh4BG155800 Rh4CG166100 Rh4DG149800
rosa_wichuraiana	Rw0G023420 Rw4G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	890
AccII	CGCG	3 cut(s)	26, 245, 302
AcoI	YGGCCR	2 cut(s)	414, 814
AfaI	GTAC	2 cut(s)	60, 173
AfiI	CCNNNNNNNGG	6 cut(s)	91, 106, 220, 336, 666, 773
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	232, 595, 610
AhdI	GACNNNNNGTC	3 cut(s)	88, 280, 751
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	5 cut(s)	84, 517, 651, 766, 816
AjuI	GAANNNNNNNTTGG	2 cut(s)	702, 734
AluBI	AGCT	6 cut(s)	226, 343, 361, 524, 581, 934
AluI	AGCT	6 cut(s)	226, 343, 361, 524, 581, 934
Alw21I	GWGCWC	2 cut(s)	228, 363
AoxI	GGCC	2 cut(s)	414, 814
ApeKI	GCWGC	4 cut(s)	387, 578, 656, 931
Asp700I	GAANNNNTTC	1 cut(s)	74
AspLEI	GCGC	2 cut(s)	247, 779
AspS9I	GGNCC	2 cut(s)	425, 902
AsuHPI	GGTGA	2 cut(s)	121, 178
AvaII	GGWCC	2 cut(s)	425, 902
BalI	TGGCCA	2 cut(s)	416, 816
BanII	GRGCYC	2 cut(s)	228, 363
BbsI	GAAGAC	2 cut(s)	11, 193
Bbv12I	GWGCWC	2 cut(s)	228, 363
BbvCI	CCTCAGC	1 cut(s)	700
BbvI	GCAGC	4 cut(s)	399, 590, 643, 943
BccI	CCATC	1 cut(s)	621
BceAI	ACGGC	1 cut(s)	245
BcgI	CGANNNNNNTGC	2 cut(s)	812, 846
BciT130I	CCWGG	5 cut(s)	86, 519, 653, 768, 818
BciVI	GTATCC	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	890
BfuI	GTATCC	1 cut(s)	398
BglI	GCCNNNNNGGC	1 cut(s)	653
BlpI	GCTNAGC	2 cut(s)	53, 927
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	5 cut(s)	86, 519, 653, 768, 818
Bme18I	GGWCC	2 cut(s)	425, 902
BmeRI	GACNNNNNGTC	3 cut(s)	88, 280, 751
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	2 cut(s)	425, 902
BmiI	GGNNCC	1 cut(s)	904
BmrFI	CCNGG	5 cut(s)	86, 519, 653, 768, 818
BmsI	GCATC	1 cut(s)	820
BpiI	GAAGAC	2 cut(s)	11, 193
BpmI	CTGGAG	2 cut(s)	441, 540
Bpu10I	CCTNAGC	1 cut(s)	700
Bpu1102I	GCTNAGC	2 cut(s)	53, 927
BsaJI	CCNNGG	3 cut(s)	24, 300, 817
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	6 cut(s)	91, 106, 220, 336, 666, 773
Bse118I	RCCGGY	2 cut(s)	247, 332
Bse1I	ACTGG	4 cut(s)	280, 424, 563, 859
BseBI	CCWGG	5 cut(s)	86, 519, 653, 768, 818
BseDI	CCNNGG	3 cut(s)	24, 300, 817
BseGI	GGATG	2 cut(s)	613, 678
BseLI	CCNNNNNNNGG	6 cut(s)	91, 106, 220, 336, 666, 773
BseMII	CTCAG	3 cut(s)	67, 714, 918
BseNI	ACTGG	4 cut(s)	280, 424, 563, 859
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	4 cut(s)	399, 590, 643, 943
BseYI	CCCAGC	1 cut(s)	581
BsgI	GTGCAG	1 cut(s)	597
Bsh1236I	CGCG	3 cut(s)	26, 245, 302
Bsh1285I	CGRYCG	1 cut(s)	538
BshFI	GGCC	2 cut(s)	416, 816
BsiEI	CGRYCG	1 cut(s)	538
BsiHKAI	GWGCWC	2 cut(s)	228, 363
BsiSI	CCGG	3 cut(s)	238, 248, 333
BslFI	GGGAC	4 cut(s)	287, 450, 453, 888
BslI	CCNNNNNNNGG	6 cut(s)	91, 106, 220, 336, 666, 773
BsmFI	GGGAC	4 cut(s)	287, 450, 453, 888
BsmI	GAATGC	3 cut(s)	76, 640, 713
BsnI	GGCC	2 cut(s)	416, 816
Bsp1286I	GDGCHC	2 cut(s)	228, 363
Bsp143I	GATC	1 cut(s)	601
Bsp1720I	GCTNAGC	2 cut(s)	53, 927
BspANI	GGCC	2 cut(s)	416, 816
BspCNI	CTCAG	3 cut(s)	66, 713, 919
BspFNI	CGCG	3 cut(s)	26, 245, 302
BspLI	GGNNCC	1 cut(s)	904
BspMI	ACCTGC	1 cut(s)	890
BspQI	GCTCTTC	1 cut(s)	233
BsrFI	RCCGGY	2 cut(s)	247, 332
BsrI	ACTGG	4 cut(s)	280, 424, 563, 859
BssAI	RCCGGY	2 cut(s)	247, 332
BssECI	CCNNGG	3 cut(s)	24, 300, 817
BssMI	GATC	1 cut(s)	601
Bst2UI	CCWGG	5 cut(s)	86, 519, 653, 768, 818
Bst4CI	ACNGT	6 cut(s)	171, 176, 410, 482, 536, 575
Bst6I	CTCTTC	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	363, 936
BstDEI	CTNAG	3 cut(s)	53, 700, 927
BstDSI	CCRYGG	2 cut(s)	24, 300
BstF5I	GGATG	2 cut(s)	613, 678
BstFNI	CGCG	3 cut(s)	26, 245, 302
BstHHI	GCGC	2 cut(s)	247, 779
BstKTI	GATC	1 cut(s)	604
BstMBI	GATC	1 cut(s)	601
BstMCI	CGRYCG	1 cut(s)	538
BstMWI	GCNNNNNNNGC	9 cut(s)	35, 38, 63, 251, 333, 587, 644, 653, 710
BstNI	CCWGG	5 cut(s)	86, 519, 653, 768, 818
BstSCI	CCNGG	5 cut(s)	84, 517, 651, 766, 816
BstUI	CGCG	3 cut(s)	26, 245, 302
BstV1I	GCAGC	4 cut(s)	399, 590, 643, 943
BstV2I	GAAGAC	2 cut(s)	11, 193
BstXI	CCANNNNNNTGG	1 cut(s)	435
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	416, 816
BtgI	CCRYGG	2 cut(s)	24, 300
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	613, 678
BtsIMutI	CAGTG	1 cut(s)	417
BveI	ACCTGC	1 cut(s)	890
Cac8I	GCNNGC	2 cut(s)	363, 936
CfoI	GCGC	2 cut(s)	247, 779
Cfr10I	RCCGGY	2 cut(s)	247, 332
Cfr13I	GGNCC	2 cut(s)	425, 902
Cfr42I	CCGCGG	2 cut(s)	27, 303
CseI	GACGC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	59, 172
CviAII	CATG	5 cut(s)	435, 469, 707, 835, 908
CviQI	GTAC	2 cut(s)	59, 172
DdeI	CTNAG	3 cut(s)	53, 700, 927
DpnI	GATC	1 cut(s)	603
DpnII	GATC	1 cut(s)	601
DriI	GACNNNNNGTC	3 cut(s)	88, 280, 751
EaeI	YGGCCR	2 cut(s)	414, 814
Eam1104I	CTCTTC	1 cut(s)	233
Eam1105I	GACNNNNNGTC	3 cut(s)	88, 280, 751
EarI	CTCTTC	1 cut(s)	233
Ecl136II	GAGCTC	2 cut(s)	226, 361
Eco24I	GRGCYC	2 cut(s)	228, 363
Eco47I	GGWCC	2 cut(s)	425, 902
Eco53kI	GAGCTC	2 cut(s)	226, 361
EcoICRI	GAGCTC	2 cut(s)	226, 361
EcoO109I	RGGNCCY	1 cut(s)	902
EcoRII	CCWGG	5 cut(s)	84, 517, 651, 766, 816
EcoT38I	GRGCYC	2 cut(s)	228, 363
FaeI	CATG	5 cut(s)	438, 472, 710, 838, 911
FaqI	GGGAC	4 cut(s)	287, 450, 453, 888
FatI	CATG	5 cut(s)	434, 468, 706, 834, 907
FauI	CCCGC	1 cut(s)	329
FauNDI	CATATG	1 cut(s)	662
FokI	GGATG	2 cut(s)	600, 685
FriOI	GRGCYC	2 cut(s)	228, 363
GlaI	GCGC	2 cut(s)	246, 778
GsaI	CCCAGC	1 cut(s)	585
GsuI	CTGGAG	2 cut(s)	441, 540
HaeIII	GGCC	2 cut(s)	416, 816
HapII	CCGG	3 cut(s)	238, 248, 333
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	2 cut(s)	247, 779
Hin1II	CATG	5 cut(s)	438, 472, 710, 838, 911
Hin6I	GCGC	2 cut(s)	245, 777
HinP1I	GCGC	2 cut(s)	245, 777
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	3 cut(s)	267, 463, 676
HpaII	CCGG	3 cut(s)	238, 248, 333
HphI	GGTGA	2 cut(s)	121, 178
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	5 cut(s)	205, 617, 685, 890, 966
Hpy99I	CGWCG	3 cut(s)	83, 106, 386
HpyAV	CCTTC	7 cut(s)	85, 109, 124, 295, 349, 589, 658
HpyCH4III	ACNGT	6 cut(s)	171, 176, 410, 482, 536, 575
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	6 cut(s)	180, 327, 349, 472, 578, 938
HpyF10VI	GCNNNNNNNGC	9 cut(s)	35, 38, 63, 251, 333, 587, 644, 653, 710
HpyF3I	CTNAG	3 cut(s)	53, 700, 927
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	5 cut(s)	438, 472, 710, 838, 911
HspAI	GCGC	2 cut(s)	245, 777
KspI	CCGCGG	2 cut(s)	27, 303
Kzo9I	GATC	1 cut(s)	601
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	4 cut(s)	223, 358, 521, 802
Lsp1109I	GCAGC	4 cut(s)	399, 590, 643, 943
LweI	GCATC	1 cut(s)	820
MabI	ACCWGGT	1 cut(s)	84
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	1 cut(s)	603
MboI	GATC	1 cut(s)	601
MboII	GAAGA	5 cut(s)	16, 124, 193, 220, 954
MhlI	GDGCHC	2 cut(s)	228, 363
MlsI	TGGCCA	2 cut(s)	416, 816
MluCI	AATT	3 cut(s)	215, 568, 948
MluNI	TGGCCA	2 cut(s)	416, 816
MlyI	GAGTC	2 cut(s)	472, 670
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	8 cut(s)	19, 214, 406, 416, 660, 709, 878, 886
Mox20I	TGGCCA	2 cut(s)	416, 816
MroXI	GAANNNNTTC	1 cut(s)	74
MscI	TGGCCA	2 cut(s)	416, 816
MseI	TTAA	1 cut(s)	942
MslI	CAYNNNNRTG	1 cut(s)	433
Msp20I	TGGCCA	2 cut(s)	416, 816
MspA1I	CMGCKG	3 cut(s)	26, 302, 581
MspI	CCGG	3 cut(s)	238, 248, 333
MspR9I	CCNGG	5 cut(s)	86, 519, 653, 768, 818
Mva1269I	GAATGC	3 cut(s)	76, 640, 713
MvaI	CCWGG	5 cut(s)	86, 519, 653, 768, 818
MvnI	CGCG	3 cut(s)	26, 245, 302
MwoI	GCNNNNNNNGC	9 cut(s)	35, 38, 63, 251, 333, 587, 644, 653, 710
NdeI	CATATG	1 cut(s)	662
NdeII	GATC	1 cut(s)	601
NlaIII	CATG	5 cut(s)	438, 472, 710, 838, 911
NlaIV	GGNNCC	1 cut(s)	904
NmuCI	GTSAC	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PctI	GAATGC	3 cut(s)	76, 640, 713
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	267
PfoI	TCCNGGA	2 cut(s)	517, 766
PleI	GAGTC	2 cut(s)	471, 670
PpsI	GAGTC	2 cut(s)	471, 670
PpuMI	RGGWCCY	1 cut(s)	902
Psp124BI	GAGCTC	2 cut(s)	228, 363
Psp5II	RGGWCCY	1 cut(s)	902
Psp6I	CCWGG	5 cut(s)	84, 517, 651, 766, 816
PspFI	CCCAGC	1 cut(s)	581
PspGI	CCWGG	5 cut(s)	84, 517, 651, 766, 816
PspN4I	GGNNCC	1 cut(s)	904
PspPI	GGNCC	2 cut(s)	425, 902
PspPPI	RGGWCCY	1 cut(s)	902
PsrI	GAACNNNNNNTAC	2 cut(s)	554, 586
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	2 cut(s)	60, 173
RsaNI	GTAC	2 cut(s)	59, 172
RseI	CAYNNNNRTG	1 cut(s)	433
SacI	GAGCTC	2 cut(s)	228, 363
SacII	CCGCGG	2 cut(s)	27, 303
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	942
Sau3AI	GATC	1 cut(s)	601
Sau96I	GGNCC	2 cut(s)	425, 902
ScaI	AGTACT	1 cut(s)	173
SchI	GAGTC	2 cut(s)	472, 670
ScrFI	CCNGG	5 cut(s)	86, 519, 653, 768, 818
SduI	GDGCHC	2 cut(s)	228, 363
SexAI	ACCWGGT	1 cut(s)	84
SfaNI	GCATC	1 cut(s)	820
Sfr303I	CCGCGG	2 cut(s)	27, 303
SgrAI	CRCCGGYG	2 cut(s)	247, 332
SgrBI	CCGCGG	2 cut(s)	27, 303
SinI	GGWCC	2 cut(s)	425, 902
SmiMI	CAYNNNNRTG	1 cut(s)	433
Sse9I	AATT	3 cut(s)	215, 568, 948
SspI	AATATT	1 cut(s)	790
SstI	GAGCTC	2 cut(s)	228, 363
StyD4I	CCNGG	5 cut(s)	84, 517, 651, 766, 816
TaaI	ACNGT	6 cut(s)	171, 176, 410, 482, 536, 575
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	4 cut(s)	78, 219, 309, 870
TasI	AATT	3 cut(s)	215, 568, 948
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	6 cut(s)	29, 32, 41, 299, 302, 368
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	1 cut(s)	942
Tru9I	TTAA	1 cut(s)	942
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	4 cut(s)	387, 578, 656, 931
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	7 cut(s)	17, 277, 368, 723, 800, 851, 924
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	2 cut(s)	425, 902
XmnI	GAANNNNTTC	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.