Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009909

Physical Location & Seq

Genomic Coordinates Forward (+)

28095917 .. 28097754

Gene Structure 1838 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG155800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAAGACCTCTCCGTTGGTTTCCACGGCGGTGGTTCTGCTCAGCGTACTATGCGTGAATGCCTTCGACGACCAGGTGTCGGCGACTCCGACGCTGGTCAAGAAAGTCAAGGGAAAGAAGGTGTGCGACAAAGGGTGGGAGTGTAAGGGGTGGTCACAGTACTGTTGCAATCTCACCATTACCGATGTCTTCCAGACCTACCAATTCGAGGAGCTCTTCAAAAACCGGAACGCGCCGGTGGCTCACGCCGTTGGATTCTGGGACTTCCAGTCCTTCATTCTCGCCGCCGCGGTTTTCGAGCCACAAGGGTTTTGCACCACCGGCGGGAAGCTTATGCAGATGAAGGAGCTCGCCGCTTTTCTCGGACACGTCGGCAGCAAGACCTCTTGTGGATACGGTGTGGCCACTGGAGGACCATTGGCATGGGGACTTTGCTATAACAGGGAAATGAGTCCCATGCAGTCATACTGTGATGATTTCTACAAATACAGATATCCCTGCTCTCCTGGAGCTGATTACTACGGTCGTGGTGCTTTGCCTATCTACTGGAACTACAATTATGGTGCAGCTGGGGAAGCATTGAAGGTTGATCTGTTGAACCATCCAGAATACATTGAGCAGAATGCTACTCTTGCTTTCCAGGCTGCAATATGGAGGTGGATGACTCCTATCAAGAAATCGCAACCCTCAGCCCATGAAGCATTCGTTGGCACTTGGAAGCCTACCAAGAATGACACATTGTCCAAGCGATTTCCTGGATTTGGCGCAACAATGAATATTCTATATGGGGAGCAAGTTTGTGGCCAGGGCGACATAGACGCCATGAACAACATCGTTTCCCATTACCAGTATTACCTCGACCTTTTGGGTGTTGGTCGTGAGGAAGCAGGTCCCCATGAAGTGCTAACTTGTGCTGAGCAGCTTGCATTTAATCCAATTACCAAAGCATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009825 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010053 GO:0010167 GO:0010337 GO:0010565 GO:0010817 GO:0012505 GO:0016049 GO:0016051 GO:0019222 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0030246 GO:0030247 GO:0031323 GO:0032350 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051273 GO:0051274 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_19

Protein Analysis

318

Amino Acids

35.25

Weight (kDa)

6.59

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	67 - 294	1.6e-60	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05850 AT1G05850
fragaria_vesca	FvH4_4g11930
malus_domestica	MD04G1029400.v1.1 MD04G1030000.v1.1 MD04G1030300.v1.1 MD13G1278500.v1.1
prunus_persica	Prupe.1G179800_v2.0.a1
pyrus_communis	pycom04g02550
rosa_chinensis	RchiOBHm_Chr4g0409551
rosa_laevigata	RLG00000008556
rosa_multiflora	Rmu_sc0000647.1_g000016 Rmu_sc0001616.1_g000011
rosa_roxburghii	Rroxscaffold_5G00354020
rosa_rugosa	Rorug04G0094500
rosa_samantha	Rh4AG156500 Rh4BG155800 Rh4CG166100 Rh4DG149800
rosa_wichuraiana	Rw0G023420 Rw4G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	878
AccII	CGCG	2 cut(s)	233, 290
AciI	CCGC	6 cut(s)	29, 285, 288, 290, 324, 354
AcoI	YGGCCR	2 cut(s)	402, 802
AcyI	GRCGYC	1 cut(s)	819
AfaI	GTAC	2 cut(s)	48, 161
AfiI	CCNNNNNNNGG	4 cut(s)	79, 208, 324, 761
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	3 cut(s)	220, 583, 598
AhdI	GACNNNNNGTC	3 cut(s)	76, 268, 739
AjiI	CACGTC	1 cut(s)	370
AjnI	CCWGG	5 cut(s)	72, 505, 639, 754, 804
AjuI	GAANNNNNNNTTGG	2 cut(s)	690, 722
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	6 cut(s)	214, 331, 349, 512, 569, 922
AluI	AGCT	6 cut(s)	214, 331, 349, 512, 569, 922
Alw21I	GWGCWC	2 cut(s)	216, 351
AoxI	GGCC	2 cut(s)	402, 802
ApeKI	GCWGC	4 cut(s)	375, 566, 644, 919
Asp700I	GAANNNNTTC	1 cut(s)	62
AspLEI	GCGC	2 cut(s)	235, 767
AspS9I	GGNCC	2 cut(s)	413, 890
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	2 cut(s)	413, 890
BalI	TGGCCA	2 cut(s)	404, 804
BanII	GRGCYC	2 cut(s)	216, 351
BbsI	GAAGAC	2 cut(s)	11, 181
Bbv12I	GWGCWC	2 cut(s)	216, 351
BbvCI	CCTCAGC	1 cut(s)	688
BbvI	GCAGC	4 cut(s)	387, 578, 631, 931
BccI	CCATC	1 cut(s)	609
BceAI	ACGGC	2 cut(s)	42, 233
BciT130I	CCWGG	5 cut(s)	74, 507, 641, 756, 806
BciVI	GTATCC	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	878
BfuI	GTATCC	1 cut(s)	386
BisI	GCNGC	7 cut(s)	285, 288, 354, 376, 567, 645, 920
BlpI	GCTNAGC	2 cut(s)	41, 915
BlsI	GCNGC	7 cut(s)	286, 289, 355, 377, 568, 646, 921
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	5 cut(s)	74, 507, 641, 756, 806
Bme18I	GGWCC	2 cut(s)	413, 890
BmeRI	GACNNNNNGTC	3 cut(s)	76, 268, 739
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	413, 890
BmiI	GGNNCC	1 cut(s)	892
BmrFI	CCNGG	5 cut(s)	74, 507, 641, 756, 806
BoxI	GACNNNNGTC	1 cut(s)	95
BpiI	GAAGAC	2 cut(s)	11, 181
BpmI	CTGGAG	2 cut(s)	429, 528
Bpu10I	CCTNAGC	1 cut(s)	688
Bpu1102I	GCTNAGC	2 cut(s)	41, 915
BsaHI	GRCGYC	1 cut(s)	819
BsaJI	CCNNGG	3 cut(s)	24, 288, 805
BsaWI	WCCGGW	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 208, 324, 761
Bse118I	RCCGGY	2 cut(s)	235, 320
Bse1I	ACTGG	4 cut(s)	268, 412, 551, 847
BseBI	CCWGG	5 cut(s)	74, 507, 641, 756, 806
BseDI	CCNNGG	3 cut(s)	24, 288, 805
BseGI	GGATG	2 cut(s)	601, 666
BseLI	CCNNNNNNNGG	4 cut(s)	79, 208, 324, 761
BseMII	CTCAG	3 cut(s)	55, 702, 906
BseNI	ACTGG	4 cut(s)	268, 412, 551, 847
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	4 cut(s)	387, 578, 631, 931
BseYI	CCCAGC	1 cut(s)	569
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	2 cut(s)	233, 290
Bsh1285I	CGRYCG	1 cut(s)	526
BshFI	GGCC	2 cut(s)	404, 804
BsiEI	CGRYCG	1 cut(s)	526
BsiHKAI	GWGCWC	2 cut(s)	216, 351
BsiSI	CCGG	3 cut(s)	226, 236, 321
BslFI	GGGAC	4 cut(s)	275, 438, 441, 876
BslI	CCNNNNNNNGG	4 cut(s)	79, 208, 324, 761
BsmFI	GGGAC	4 cut(s)	275, 438, 441, 876
BsmI	GAATGC	3 cut(s)	64, 628, 701
BsnI	GGCC	2 cut(s)	404, 804
Bsp1286I	GDGCHC	2 cut(s)	216, 351
Bsp143I	GATC	1 cut(s)	589
Bsp1720I	GCTNAGC	2 cut(s)	41, 915
BspACI	CCGC	6 cut(s)	29, 285, 288, 290, 324, 354
BspANI	GGCC	2 cut(s)	404, 804
BspCNI	CTCAG	3 cut(s)	54, 701, 907
BspFNI	CGCG	2 cut(s)	233, 290
BspLI	GGNNCC	1 cut(s)	892
BspMI	ACCTGC	1 cut(s)	878
BspQI	GCTCTTC	1 cut(s)	221
BsrFI	RCCGGY	2 cut(s)	235, 320
BsrI	ACTGG	4 cut(s)	268, 412, 551, 847
BssAI	RCCGGY	2 cut(s)	235, 320
BssECI	CCNNGG	3 cut(s)	24, 288, 805
BssMI	GATC	1 cut(s)	589
BssNI	GRCGYC	1 cut(s)	819
Bst2UI	CCWGG	5 cut(s)	74, 507, 641, 756, 806
Bst4CI	ACNGT	5 cut(s)	159, 164, 398, 470, 524
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	819
BstC8I	GCNNGC	2 cut(s)	351, 924
BstDEI	CTNAG	3 cut(s)	41, 688, 915
BstDSI	CCRYGG	2 cut(s)	24, 288
BstF5I	GGATG	2 cut(s)	601, 666
BstFNI	CGCG	2 cut(s)	233, 290
BstHHI	GCGC	2 cut(s)	235, 767
BstKTI	GATC	1 cut(s)	592
BstMBI	GATC	1 cut(s)	589
BstMCI	CGRYCG	1 cut(s)	526
BstMWI	GCNNNNNNNGC	7 cut(s)	51, 239, 321, 575, 632, 641, 698
BstNI	CCWGG	5 cut(s)	74, 507, 641, 756, 806
BstPAI	GACNNNNGTC	1 cut(s)	95
BstSCI	CCNGG	5 cut(s)	72, 505, 639, 754, 804
BstUI	CGCG	2 cut(s)	233, 290
BstV1I	GCAGC	4 cut(s)	387, 578, 631, 931
BstV2I	GAAGAC	2 cut(s)	11, 181
BstXI	CCANNNNNNTGG	2 cut(s)	31, 423
BsuI	GTATCC	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	404, 804
BtgI	CCRYGG	2 cut(s)	24, 288
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	601, 666
BtsIMutI	CAGTG	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	878
Cac8I	GCNNGC	2 cut(s)	351, 924
CfoI	GCGC	2 cut(s)	235, 767
Cfr10I	RCCGGY	2 cut(s)	235, 320
Cfr13I	GGNCC	2 cut(s)	413, 890
Cfr42I	CCGCGG	1 cut(s)	291
CseI	GACGC	2 cut(s)	100, 827
CsiI	ACCWGGT	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	47, 160
CviAII	CATG	5 cut(s)	423, 457, 695, 823, 896
CviQI	GTAC	2 cut(s)	47, 160
DdeI	CTNAG	3 cut(s)	41, 688, 915
DpnI	GATC	1 cut(s)	591
DpnII	GATC	1 cut(s)	589
DriI	GACNNNNNGTC	3 cut(s)	76, 268, 739
EaeI	YGGCCR	2 cut(s)	402, 802
Eam1104I	CTCTTC	1 cut(s)	221
Eam1105I	GACNNNNNGTC	3 cut(s)	76, 268, 739
EarI	CTCTTC	1 cut(s)	221
Ecl136II	GAGCTC	2 cut(s)	214, 349
Eco24I	GRGCYC	2 cut(s)	216, 351
Eco32I	GATATC	1 cut(s)	494
Eco47I	GGWCC	2 cut(s)	413, 890
Eco53kI	GAGCTC	2 cut(s)	214, 349
EcoICRI	GAGCTC	2 cut(s)	214, 349
EcoO109I	RGGNCCY	1 cut(s)	890
EcoRII	CCWGG	5 cut(s)	72, 505, 639, 754, 804
EcoRV	GATATC	1 cut(s)	494
EcoT38I	GRGCYC	2 cut(s)	216, 351
FaeI	CATG	5 cut(s)	426, 460, 698, 826, 899
FaqI	GGGAC	4 cut(s)	275, 438, 441, 876
FatI	CATG	5 cut(s)	422, 456, 694, 822, 895
FauI	CCCGC	1 cut(s)	317
Fnu4HI	GCNGC	7 cut(s)	285, 288, 354, 376, 567, 645, 920
FokI	GGATG	2 cut(s)	588, 673
FriOI	GRGCYC	2 cut(s)	216, 351
Fsp4HI	GCNGC	7 cut(s)	285, 288, 354, 376, 567, 645, 920
GlaI	GCGC	2 cut(s)	234, 766
GluI	GCNGC	7 cut(s)	285, 288, 354, 376, 567, 645, 920
GsaI	CCCAGC	1 cut(s)	573
GsuI	CTGGAG	2 cut(s)	429, 528
HaeIII	GGCC	2 cut(s)	404, 804
HapII	CCGG	3 cut(s)	226, 236, 321
HgaI	GACGC	2 cut(s)	100, 827
HhaI	GCGC	2 cut(s)	235, 767
Hin1I	GRCGYC	1 cut(s)	819
Hin1II	CATG	5 cut(s)	426, 460, 698, 826, 899
Hin6I	GCGC	2 cut(s)	233, 765
HinP1I	GCGC	2 cut(s)	233, 765
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	4 cut(s)	85, 255, 451, 664
HpaII	CCGG	3 cut(s)	226, 236, 321
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	90, 365
Hpy188III	TCNNGA	6 cut(s)	100, 193, 605, 673, 878, 954
Hpy99I	CGWCG	3 cut(s)	71, 94, 374
HpyAV	CCTTC	5 cut(s)	73, 112, 283, 337, 577
HpyCH4III	ACNGT	5 cut(s)	159, 164, 398, 470, 524
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	7 cut(s)	168, 315, 337, 460, 566, 647, 926
HpyF10VI	GCNNNNNNNGC	7 cut(s)	51, 239, 321, 575, 632, 641, 698
HpyF3I	CTNAG	3 cut(s)	41, 688, 915
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	819
Hsp92II	CATG	5 cut(s)	426, 460, 698, 826, 899
HspAI	GCGC	2 cut(s)	233, 765
KspI	CCGCGG	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	589
LguI	GCTCTTC	1 cut(s)	221
LmnI	GCTCC	4 cut(s)	211, 346, 509, 790
Lsp1109I	GCAGC	4 cut(s)	387, 578, 631, 931
MabI	ACCWGGT	1 cut(s)	72
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	1 cut(s)	591
MboI	GATC	1 cut(s)	589
MboII	GAAGA	4 cut(s)	16, 181, 208, 942
MhlI	GDGCHC	2 cut(s)	216, 351
MlsI	TGGCCA	2 cut(s)	404, 804
MluCI	AATT	3 cut(s)	203, 556, 936
MluNI	TGGCCA	2 cut(s)	404, 804
MlyI	GAGTC	3 cut(s)	79, 460, 658
MmeI	TCCRAC	2 cut(s)	113, 232
MnlI	CCTC	8 cut(s)	19, 202, 394, 404, 648, 697, 866, 874
Mox20I	TGGCCA	2 cut(s)	404, 804
MroXI	GAANNNNTTC	1 cut(s)	62
MscI	TGGCCA	2 cut(s)	404, 804
MseI	TTAA	1 cut(s)	930
MslI	CAYNNNNRTG	2 cut(s)	29, 421
Msp20I	TGGCCA	2 cut(s)	404, 804
MspA1I	CMGCKG	2 cut(s)	290, 569
MspI	CCGG	3 cut(s)	226, 236, 321
MspR9I	CCNGG	5 cut(s)	74, 507, 641, 756, 806
Mva1269I	GAATGC	3 cut(s)	64, 628, 701
MvaI	CCWGG	5 cut(s)	74, 507, 641, 756, 806
MvnI	CGCG	2 cut(s)	233, 290
MwoI	GCNNNNNNNGC	7 cut(s)	51, 239, 321, 575, 632, 641, 698
NdeII	GATC	1 cut(s)	589
NlaIII	CATG	5 cut(s)	426, 460, 698, 826, 899
NlaIV	GGNNCC	1 cut(s)	892
NmuCI	GTSAC	1 cut(s)	153
OliI	CACNNNNGTG	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PctI	GAATGC	3 cut(s)	64, 628, 701
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	255
PfoI	TCCNGGA	2 cut(s)	505, 754
PkrI	GCNGC	7 cut(s)	286, 289, 355, 377, 568, 646, 921
PleI	GAGTC	3 cut(s)	79, 459, 658
PpsI	GAGTC	3 cut(s)	79, 459, 658
PpuMI	RGGWCCY	1 cut(s)	890
PshAI	GACNNNNGTC	1 cut(s)	95
Psp124BI	GAGCTC	2 cut(s)	216, 351
Psp5II	RGGWCCY	1 cut(s)	890
Psp6I	CCWGG	5 cut(s)	72, 505, 639, 754, 804
PspFI	CCCAGC	1 cut(s)	569
PspGI	CCWGG	5 cut(s)	72, 505, 639, 754, 804
PspN4I	GGNNCC	1 cut(s)	892
PspPI	GGNCC	2 cut(s)	413, 890
PspPPI	RGGWCCY	1 cut(s)	890
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	2 cut(s)	48, 161
RsaNI	GTAC	2 cut(s)	47, 160
RseI	CAYNNNNRTG	2 cut(s)	29, 421
SacI	GAGCTC	2 cut(s)	216, 351
SacII	CCGCGG	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	930
SatI	GCNGC	7 cut(s)	285, 288, 354, 376, 567, 645, 920
Sau3AI	GATC	1 cut(s)	589
Sau96I	GGNCC	2 cut(s)	413, 890
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	3 cut(s)	79, 460, 658
ScrFI	CCNGG	5 cut(s)	74, 507, 641, 756, 806
SduI	GDGCHC	2 cut(s)	216, 351
SexAI	ACCWGGT	1 cut(s)	72
Sfr303I	CCGCGG	1 cut(s)	291
SgrAI	CRCCGGYG	2 cut(s)	235, 320
SgrBI	CCGCGG	1 cut(s)	291
SinI	GGWCC	2 cut(s)	413, 890
SmiMI	CAYNNNNRTG	2 cut(s)	29, 421
Sse9I	AATT	3 cut(s)	203, 556, 936
SsiI	CCGC	6 cut(s)	29, 285, 288, 290, 324, 354
SspI	AATATT	1 cut(s)	778
SstI	GAGCTC	2 cut(s)	216, 351
StyD4I	CCNGG	5 cut(s)	72, 505, 639, 754, 804
TaaI	ACNGT	5 cut(s)	159, 164, 398, 470, 524
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	4 cut(s)	66, 207, 297, 858
TasI	AATT	3 cut(s)	203, 556, 936
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	3 cut(s)	287, 290, 356
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	930
Tru9I	TTAA	1 cut(s)	930
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	4 cut(s)	375, 566, 644, 919
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	7 cut(s)	17, 265, 356, 711, 788, 839, 912
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	2 cut(s)	413, 890
XmnI	GAANNNNTTC	1 cut(s)	62
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.