Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009909

Physical Location & Seq

Genomic Coordinates Reverse (-)

15579478 .. 15582276

Gene Structure 2799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G179800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAAGATTTCCACTGCTGCATTGGCGGTGGCGGTGGTGCTGAGTGTTTTCTTAGGTGCCAGCAGCGACGGCGATATGCCGTCAACGACCCCGCGGGTGAAGACGGTGAGGGGGAAGAAGGTGTGTGACAGAGGGTGGGAGTGTAAAGGGTGGTCCCAGTACTGTTGCAATCTCACCATCTCTGATTTCTTCCAAACTTACCAGTTTGAGAATCTCTTCTCCAAAAGAAACACGCCGGTGGCGCATGCCGTTGGGTTTTGGGATTATCAGTCGTTTATTACTGCTTCTGCCCTCTTCCAGCCTCTTGGGTTCGGGACCACTGGTGGGAAGCTTATGCAGATGAAGGAGATCGCCGCCTTTCTTGGACATGTCGGCAGCAAAACCACTTGTGGTTATGGTGTGGCCACAGGAGGACCATTGGCCTGGGGACTTTGCTACAACAGGGAAATGAGTCCCATGCAGTCATACTGCGATGACTACTACAAATACACATACCCCTGCACTCCTGGAGCTGAATACTATGGTCGTGGTGCTTTGCCAATCTACTGGAACTACAATTATGGTGCAGCTGGAGAAGCTTTGAAGGTTGATCTGTTGAACCATCCCGAATACATTGAGCAGAATGCTACTCTTGCTTTCCAGGCTGCAATATGGAGGTGGATGACTGCTATCAAGAAGTCACAACCCTCAGCGCACGATGCATTTGTTGGCAATTGGAAGCCCACCAAGAATGATACTTTGAGCAAGAGGTTTCCTGGATTTGGTGCTACAATGAATATTCTTTATGGCGATCAACTTTGTGGGCAGGGCGACATTGATGCCATGAACACCATCGTTTCCCATTACCAGTACTACCTTGACCTTATGGGTGTCGGACGAGAGGAAGCAGGGCCCCATGAAGTGCTAACTTGTGCCGAGCAGGTTGCATTTAACCCAACCAAGGCTGCTGTTACTGCATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009825 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010053 GO:0010167 GO:0010337 GO:0010565 GO:0010817 GO:0012505 GO:0016049 GO:0016051 GO:0019222 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0030246 GO:0030247 GO:0031323 GO:0032350 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051273 GO:0051274 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_19

Protein Analysis

322

Amino Acids

35.34

Weight (kDa)

6.97

Isoelectric Point (pI)

28.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05850 AT1G05850
fragaria_vesca	FvH4_4g11930
malus_domestica	MD04G1029400.v1.1 MD04G1030000.v1.1 MD04G1030300.v1.1 MD13G1278500.v1.1
prunus_persica	Prupe.1G179800_v2.0.a1
pyrus_communis	pycom04g02550
rosa_chinensis	RchiOBHm_Chr4g0409551
rosa_laevigata	RLG00000008556
rosa_multiflora	Rmu_sc0000647.1_g000016 Rmu_sc0001616.1_g000011
rosa_roxburghii	Rroxscaffold_5G00354020
rosa_rugosa	Rorug04G0094500
rosa_samantha	Rh4AG156500 Rh4BG155800 Rh4CG166100 Rh4DG149800
rosa_wichuraiana	Rw0G023420 Rw4G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	910
AccB1I	GGYRCC	1 cut(s)	56
AccII	CGCG	1 cut(s)	94
AciI	CCGC	5 cut(s)	26, 32, 92, 94, 354
AcoI	YGGCCR	1 cut(s)	402
AfaI	GTAC	2 cut(s)	161, 851
AfiI	CCNNNNNNNGG	3 cut(s)	324, 761, 940
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	583, 598
AjnI	CCWGG	4 cut(s)	422, 505, 639, 754
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	4 cut(s)	331, 512, 569, 578
AluI	AGCT	4 cut(s)	331, 512, 569, 578
AoxI	GGCC	3 cut(s)	402, 420, 890
ApaI	GGGCCC	1 cut(s)	894
ApeKI	GCWGC	6 cut(s)	17, 63, 375, 566, 644, 944
Asp700I	GAANNNNTTC	1 cut(s)	215
AspLEI	GCGC	2 cut(s)	244, 694
AspS9I	GGNCC	5 cut(s)	153, 315, 413, 890, 891
AsuHPI	GGTGA	3 cut(s)	109, 118, 166
AvaII	GGWCC	3 cut(s)	153, 315, 413
BaeGI	GKGCMC	1 cut(s)	894
BalI	TGGCCA	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	894
BbsI	GAAGAC	1 cut(s)	107
BbvCI	CCTCAGC	1 cut(s)	688
BbvI	GCAGC	6 cut(s)	4, 75, 387, 578, 631, 931
BccI	CCATC	3 cut(s)	185, 609, 839
BceAI	ACGGC	3 cut(s)	64, 85, 233
BcgI	CGANNNNNNTGC	4 cut(s)	800, 834, 905, 939
BciT130I	CCWGG	4 cut(s)	424, 507, 641, 756
BfuAI	ACCTGC	1 cut(s)	910
BisI	GCNGC	7 cut(s)	18, 64, 354, 376, 567, 645, 945
BlsI	GCNGC	7 cut(s)	19, 65, 355, 377, 568, 646, 946
BmcAI	AGTACT	2 cut(s)	161, 851
Bme1390I	CCNGG	4 cut(s)	424, 507, 641, 756
Bme18I	GGWCC	3 cut(s)	153, 315, 413
BmgT120I	GGNCC	5 cut(s)	153, 315, 413, 890, 891
BmiI	GGNNCC	5 cut(s)	58, 155, 316, 892, 893
BmrFI	CCNGG	4 cut(s)	424, 507, 641, 756
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	688, 808
BmuI	ACTGGG	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	2 cut(s)	528, 591
Bpu10I	CCTNAGC	1 cut(s)	688
BsaJI	CCNNGG	3 cut(s)	92, 423, 939
Bsc4I	CCNNNNNNNGG	3 cut(s)	324, 761, 940
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	5 cut(s)	157, 202, 325, 551, 847
BseBI	CCWGG	4 cut(s)	424, 507, 641, 756
BseDI	CCNNGG	3 cut(s)	92, 423, 939
BseGI	GGATG	2 cut(s)	601, 666
BseLI	CCNNNNNNNGG	3 cut(s)	324, 761, 940
BseMII	CTCAG	2 cut(s)	32, 702
BseNI	ACTGG	5 cut(s)	157, 202, 325, 551, 847
BseSI	GKGCMC	1 cut(s)	894
BseXI	GCAGC	6 cut(s)	4, 75, 387, 578, 631, 931
BsgI	GTGCAG	2 cut(s)	484, 585
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	404, 422, 892
BshNI	GGYRCC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	4 cut(s)	139, 328, 438, 441
BslI	CCNNNNNNNGG	3 cut(s)	324, 761, 940
BsmFI	GGGAC	4 cut(s)	139, 328, 438, 441
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	3 cut(s)	404, 422, 892
Bsp120I	GGGCCC	1 cut(s)	890
Bsp1286I	GDGCHC	1 cut(s)	894
Bsp143I	GATC	3 cut(s)	348, 589, 790
BspACI	CCGC	5 cut(s)	26, 32, 92, 94, 354
BspANI	GGCC	3 cut(s)	404, 422, 892
BspCNI	CTCAG	2 cut(s)	33, 701
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	5 cut(s)	58, 155, 316, 892, 893
BspMI	ACCTGC	1 cut(s)	910
BspT107I	GGYRCC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	5 cut(s)	157, 202, 325, 551, 847
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	92, 423, 939
BssMI	GATC	3 cut(s)	348, 589, 790
BssT1I	CCWWGG	1 cut(s)	939
Bst2UI	CCWGG	4 cut(s)	424, 507, 641, 756
Bst4CI	ACNGT	2 cut(s)	106, 164
Bst6I	CTCTTC	2 cut(s)	221, 299
BstC8I	GCNNGC	2 cut(s)	61, 246
BstDEI	CTNAG	3 cut(s)	41, 52, 688
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	601, 666
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	244, 694
BstKTI	GATC	3 cut(s)	351, 592, 793
BstMBI	GATC	3 cut(s)	348, 589, 790
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 69, 241, 575, 632, 641, 698, 953
BstNI	CCWGG	4 cut(s)	424, 507, 641, 756
BstNSI	RCATGY	2 cut(s)	248, 371
BstSCI	CCNGG	4 cut(s)	422, 505, 639, 754
BstSLI	GKGCMC	1 cut(s)	894
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	6 cut(s)	4, 75, 387, 578, 631, 931
BstV2I	GAAGAC	1 cut(s)	107
BstXI	CCANNNNNNTGG	3 cut(s)	305, 423, 546
BsuRI	GGCC	3 cut(s)	404, 422, 892
BtgI	CCRYGG	1 cut(s)	92
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	601, 666
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 318
BveI	ACCTGC	1 cut(s)	910
Cac8I	GCNNGC	2 cut(s)	61, 246
CfoI	GCGC	2 cut(s)	244, 694
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	5 cut(s)	153, 315, 413, 890, 891
Cfr42I	CCGCGG	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	160, 850
CviAII	CATG	5 cut(s)	245, 368, 457, 823, 896
CviQI	GTAC	2 cut(s)	160, 850
DdeI	CTNAG	3 cut(s)	41, 52, 688
DpnI	GATC	3 cut(s)	350, 591, 792
DpnII	GATC	3 cut(s)	348, 589, 790
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	2 cut(s)	221, 299
EarI	CTCTTC	2 cut(s)	221, 299
Eco130I	CCWWGG	1 cut(s)	939
Eco24I	GRGCYC	1 cut(s)	894
Eco47I	GGWCC	3 cut(s)	153, 315, 413
EcoO109I	RGGNCCY	2 cut(s)	890, 891
EcoRII	CCWGG	4 cut(s)	422, 505, 639, 754
EcoT14I	CCWWGG	1 cut(s)	939
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	894
ErhI	CCWWGG	1 cut(s)	939
FaeI	CATG	5 cut(s)	248, 371, 460, 826, 899
FaqI	GGGAC	4 cut(s)	139, 328, 438, 441
FatI	CATG	5 cut(s)	244, 367, 456, 822, 895
FauI	CCCGC	2 cut(s)	87, 99
Fnu4HI	GCNGC	7 cut(s)	18, 64, 354, 376, 567, 645, 945
FokI	GGATG	2 cut(s)	588, 673
FriOI	GRGCYC	1 cut(s)	894
Fsp4HI	GCNGC	7 cut(s)	18, 64, 354, 376, 567, 645, 945
GlaI	GCGC	2 cut(s)	243, 693
GluI	GCNGC	7 cut(s)	18, 64, 354, 376, 567, 645, 945
GsuI	CTGGAG	2 cut(s)	528, 591
HaeIII	GGCC	3 cut(s)	404, 422, 892
HapII	CCGG	1 cut(s)	236
HhaI	GCGC	2 cut(s)	244, 694
Hin1II	CATG	5 cut(s)	248, 371, 460, 826, 899
Hin6I	GCGC	2 cut(s)	242, 692
HinP1I	GCGC	2 cut(s)	242, 692
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HindIII	AAGCTT	2 cut(s)	329, 576
HinfI	GANTC	2 cut(s)	211, 451
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	3 cut(s)	109, 118, 166
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	2 cut(s)	184, 875
Hpy188III	TCNNGA	4 cut(s)	313, 605, 673, 963
Hpy8I	GTNNAC	1 cut(s)	84
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	112, 337, 577
HpyCH4III	ACNGT	2 cut(s)	106, 164
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 69, 241, 575, 632, 641, 698, 953
HpyF3I	CTNAG	3 cut(s)	41, 52, 688
Hsp92II	CATG	5 cut(s)	248, 371, 460, 826, 899
HspAI	GCGC	2 cut(s)	242, 692
KspI	CCGCGG	1 cut(s)	95
Kzo9I	GATC	3 cut(s)	348, 589, 790
LmnI	GCTCC	1 cut(s)	509
Lsp1109I	GCAGC	6 cut(s)	4, 75, 387, 578, 631, 931
LweI	GCATC	2 cut(s)	688, 808
MaeIII	GTNAC	3 cut(s)	125, 678, 949
MalI	GATC	3 cut(s)	350, 591, 792
MboI	GATC	3 cut(s)	348, 589, 790
MboII	GAAGA	7 cut(s)	16, 112, 127, 181, 208, 286, 951
MfeI	CAATTG	1 cut(s)	712
MhlI	GDGCHC	1 cut(s)	894
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	2 cut(s)	556, 712
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	460
MmeI	TCCRAC	1 cut(s)	853
MnlI	CCTC	9 cut(s)	102, 125, 302, 312, 404, 648, 697, 741, 874
Mox20I	TGGCCA	1 cut(s)	404
Mph1103I	ATGCAT	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	1 cut(s)	930
MslI	CAYNNNNRTG	1 cut(s)	236
Msp20I	TGGCCA	1 cut(s)	404
MspA1I	CMGCKG	2 cut(s)	94, 569
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	4 cut(s)	424, 507, 641, 756
MunI	CAATTG	1 cut(s)	712
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	4 cut(s)	424, 507, 641, 756
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	8 cut(s)	23, 69, 241, 575, 632, 641, 698, 953
NdeII	GATC	3 cut(s)	348, 589, 790
NlaIII	CATG	5 cut(s)	248, 371, 460, 826, 899
NlaIV	GGNNCC	5 cut(s)	58, 155, 316, 892, 893
NmeAIII	GCCGAG	1 cut(s)	940
NmuCI	GTSAC	2 cut(s)	125, 678
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	2 cut(s)	248, 371
OliI	CACNNNNGTG	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	248
PciI	ACATGT	1 cut(s)	367
PctI	GAATGC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	211
PfoI	TCCNGGA	2 cut(s)	505, 754
PkrI	GCNGC	7 cut(s)	19, 65, 355, 377, 568, 646, 946
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
PscI	ACATGT	1 cut(s)	367
Psp6I	CCWGG	4 cut(s)	422, 505, 639, 754
PspGI	CCWGG	4 cut(s)	422, 505, 639, 754
PspN4I	GGNNCC	5 cut(s)	58, 155, 316, 892, 893
PspOMI	GGGCCC	1 cut(s)	890
PspPI	GGNCC	5 cut(s)	153, 315, 413, 890, 891
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	2 cut(s)	161, 851
RsaNI	GTAC	2 cut(s)	160, 850
RseI	CAYNNNNRTG	1 cut(s)	236
SacII	CCGCGG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	930
SatI	GCNGC	7 cut(s)	18, 64, 354, 376, 567, 645, 945
Sau3AI	GATC	3 cut(s)	348, 589, 790
Sau96I	GGNCC	5 cut(s)	153, 315, 413, 890, 891
ScaI	AGTACT	2 cut(s)	161, 851
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	4 cut(s)	424, 507, 641, 756
SduI	GDGCHC	1 cut(s)	894
SfaNI	GCATC	2 cut(s)	688, 808
Sfr303I	CCGCGG	1 cut(s)	95
SgrAI	CRCCGGYG	1 cut(s)	235
SgrBI	CCGCGG	1 cut(s)	95
SinI	GGWCC	3 cut(s)	153, 315, 413
SmiMI	CAYNNNNRTG	1 cut(s)	236
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	2 cut(s)	556, 712
SsiI	CCGC	5 cut(s)	26, 32, 92, 94, 354
SspI	AATATT	1 cut(s)	778
StyD4I	CCNGG	4 cut(s)	422, 505, 639, 754
StyI	CCWWGG	1 cut(s)	939
TaaI	ACNGT	2 cut(s)	106, 164
TasI	AATT	2 cut(s)	556, 712
TatI	WGTACW	2 cut(s)	159, 849
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	930
Tru9I	TTAA	1 cut(s)	930
TscAI	CASTG	2 cut(s)	19, 325
TseFI	GTSAC	2 cut(s)	125, 678
TseI	GCWGC	6 cut(s)	17, 63, 375, 566, 644, 944
Tsp45I	GTSAC	2 cut(s)	125, 678
TspDTI	ATGAA	5 cut(s)	17, 356, 788, 839, 912
TspRI	CASTG	2 cut(s)	19, 325
VpaK11BI	GGWCC	3 cut(s)	153, 315, 413
XceI	RCATGY	2 cut(s)	248, 371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	215
ZrmI	AGTACT	2 cut(s)	161, 851
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.