Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009909

Physical Location & Seq

Genomic Coordinates Reverse (-)

2275301 .. 2276366

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGGATGATTGTTCCAGGTGGTTACGGTGTGGCCACCGGAGGACCATTCGCTTGGGGGCTTTGCTACAACAGGGAAATGAGTCCCATGCAGTCATACTGTGATGACTATTACAAGTACATATATCCGTGCAGTCCTGGAGCTGAATACTATGGCCGTGGTGCTTTGCCTATCTACTGGAACTACAATTATGGTGCAGCTGGAGACGCTTTGAAGGCGGATCTGTTGAACCATCCAGAATACATTGAGCAGAATGCTACTCTTGCCTTCCAAGCTGCAGTATGGAGGTGGATGACCCCTATCAAGAAGTCACAACCCTCAGCCCACGAAGCATTTGTCGGAGACTGGAAGCCTACCAAGAACGATACATTGAGTAAGCGGTTTCCTGGATTTGGCACTACAATGAATATTCTTTATGGGGAATCAGTTTGTGGCAAGGGTGACATTGATGCCATGAACAACATCGTTTCACATTACCAGTACTACCTTGACCTTATGGGTGTCGGTCGAGACGAGGCAGGGCCTCATGACGTGTTAACTTGTGCCGAGCAGGTTGCATTTAACCCAATCCAGCCTGCTGTTACTGCATCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009825 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010053 GO:0010167 GO:0010337 GO:0010565 GO:0010817 GO:0012505 GO:0016049 GO:0016051 GO:0019222 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0030246 GO:0030247 GO:0031323 GO:0032350 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051273 GO:0051274 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_19

Protein Analysis

199

Amino Acids

21.88

Weight (kDa)

5.08

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05850 AT1G05850
fragaria_vesca	FvH4_4g11930
malus_domestica	MD04G1029400.v1.1 MD04G1030000.v1.1 MD04G1030300.v1.1 MD13G1278500.v1.1
prunus_persica	Prupe.1G179800_v2.0.a1
pyrus_communis	pycom04g02550
rosa_chinensis	RchiOBHm_Chr4g0409551
rosa_laevigata	RLG00000008556
rosa_multiflora	Rmu_sc0000647.1_g000016 Rmu_sc0001616.1_g000011
rosa_roxburghii	Rroxscaffold_5G00354020
rosa_rugosa	Rorug04G0094500
rosa_samantha	Rh4AG156500 Rh4BG155800 Rh4CG166100 Rh4DG149800
rosa_wichuraiana	Rw0G023420 Rw4G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	541
AciI	CCGC	2 cut(s)	218, 379
AclWI	GGATC	1 cut(s)	228
AcoI	YGGCCR	2 cut(s)	33, 154
AfaI	GTAC	2 cut(s)	119, 482
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	531
AgsI	TTSAA	2 cut(s)	214, 229
AjiI	CACGTC	1 cut(s)	532
AjnI	CCWGG	3 cut(s)	16, 136, 385
AluBI	AGCT	3 cut(s)	143, 200, 275
AluI	AGCT	3 cut(s)	143, 200, 275
Alw26I	GTCTC	3 cut(s)	198, 336, 504
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	3 cut(s)	33, 154, 521
ApeKI	GCWGC	2 cut(s)	197, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AspS9I	GGNCC	2 cut(s)	44, 521
AsuHPI	GGTGA	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	35
BbvCI	CCTCAGC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	209, 262
BccI	CCATC	1 cut(s)	240
BceAI	ACGGC	1 cut(s)	141
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	3 cut(s)	18, 138, 387
BcoDI	GTCTC	3 cut(s)	198, 336, 504
BfmI	CTRYAG	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	541
BisI	GCNGC	2 cut(s)	198, 276
BlsI	GCNGC	2 cut(s)	199, 277
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	3 cut(s)	18, 138, 387
Bme18I	GGWCC	1 cut(s)	44
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	2 cut(s)	44, 521
BmrFI	CCNGG	3 cut(s)	18, 138, 387
BmsI	GCATC	1 cut(s)	439
BpmI	CTGGAG	2 cut(s)	159, 222
Bpu10I	CCTNAGC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	157
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	3 cut(s)	182, 350, 478
BseBI	CCWGG	3 cut(s)	18, 138, 387
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	3 cut(s)	12, 232, 297
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	3 cut(s)	182, 350, 478
BseXI	GCAGC	2 cut(s)	209, 262
BsgI	GTGCAG	2 cut(s)	151, 216
Bsh1285I	CGRYCG	1 cut(s)	508
BshFI	GGCC	3 cut(s)	35, 156, 523
BsiEI	CGRYCG	1 cut(s)	508
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	3 cut(s)	198, 336, 504
BsmBI	CGTCTC	2 cut(s)	198, 504
BsmFI	GGGAC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	3 cut(s)	35, 156, 523
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	2 cut(s)	218, 379
BspANI	GGCC	3 cut(s)	35, 156, 523
BspCNI	CTCAG	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	526
BspMAI	CTGCAG	1 cut(s)	280
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	1 cut(s)	228
BsrI	ACTGG	3 cut(s)	182, 350, 478
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	1 cut(s)	220
Bst2UI	CCWGG	3 cut(s)	18, 138, 387
Bst4CI	ACNGT	2 cut(s)	29, 101
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	1 cut(s)	319
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	3 cut(s)	12, 232, 297
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	3 cut(s)	198, 336, 504
BstMBI	GATC	1 cut(s)	220
BstMCI	CGRYCG	1 cut(s)	508
BstMWI	GCNNNNNNNGC	6 cut(s)	206, 215, 263, 272, 329, 584
BstNI	CCWGG	3 cut(s)	18, 138, 387
BstSCI	CCNGG	3 cut(s)	16, 136, 385
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	209, 262
BstX2I	RGATCY	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	35, 156, 523
BtgI	CCRYGG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	532
BtsCI	GGATG	3 cut(s)	12, 232, 297
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	576
CciI	TCATGA	1 cut(s)	526
Cfr13I	GGNCC	2 cut(s)	44, 521
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	118, 481
CviAII	CATG	3 cut(s)	88, 454, 527
CviQI	GTAC	2 cut(s)	118, 481
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EaeI	YGGCCR	2 cut(s)	33, 154
EciI	GGCGGA	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	521
EcoRII	CCWGG	3 cut(s)	16, 136, 385
Esp3I	CGTCTC	2 cut(s)	198, 504
FaeI	CATG	3 cut(s)	91, 457, 530
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	3 cut(s)	87, 453, 526
Fnu4HI	GCNGC	2 cut(s)	198, 276
FokI	GGATG	3 cut(s)	19, 219, 304
Fsp4HI	GCNGC	2 cut(s)	198, 276
GluI	GCNGC	2 cut(s)	198, 276
GsuI	CTGGAG	2 cut(s)	159, 222
HaeIII	GGCC	3 cut(s)	35, 156, 523
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	91, 457, 530
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HinfI	GANTC	2 cut(s)	82, 422
HpaI	GTTAAC	1 cut(s)	537
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	1 cut(s)	537
Hpy188I	TCNGA	1 cut(s)	341
Hpy188III	TCNNGA	5 cut(s)	236, 304, 509, 527, 594
Hpy8I	GTNNAC	1 cut(s)	537
HpyAV	CCTTC	2 cut(s)	208, 277
HpyCH4III	ACNGT	2 cut(s)	29, 101
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	6 cut(s)	91, 132, 197, 278, 557, 587
HpyF10VI	GCNNNNNNNGC	6 cut(s)	206, 215, 263, 272, 329, 584
HpyF3I	CTNAG	1 cut(s)	319
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	3 cut(s)	91, 457, 530
KspAI	GTTAAC	1 cut(s)	537
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	140
Lsp1109I	GCAGC	2 cut(s)	209, 262
LweI	GCATC	1 cut(s)	439
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	4 cut(s)	23, 309, 440, 580
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MflI	RGATCY	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	1 cut(s)	187
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	5 cut(s)	35, 279, 328, 508, 534
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	2 cut(s)	536, 561
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	3 cut(s)	18, 138, 387
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	3 cut(s)	18, 138, 387
MwoI	GCNNNNNNNGC	6 cut(s)	206, 215, 263, 272, 329, 584
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	3 cut(s)	91, 457, 530
NmeAIII	GCCGAG	1 cut(s)	571
NmuCI	GTSAC	2 cut(s)	309, 440
PagI	TCATGA	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	422
PfoI	TCCNGGA	2 cut(s)	136, 385
PkrI	GCNGC	2 cut(s)	199, 277
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
Psp6I	CCWGG	3 cut(s)	16, 136, 385
PspGI	CCWGG	3 cut(s)	16, 136, 385
PspPI	GGNCC	2 cut(s)	44, 521
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	2 cut(s)	119, 482
RsaNI	GTAC	2 cut(s)	118, 481
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	536, 561
SatI	GCNGC	2 cut(s)	198, 276
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	2 cut(s)	44, 521
ScaI	AGTACT	1 cut(s)	482
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	3 cut(s)	18, 138, 387
SetI	ASST	9 cut(s)	22, 145, 202, 277, 290, 489, 495, 534, 555
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	1 cut(s)	276
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	401
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	2 cut(s)	218, 379
SspI	AATATT	1 cut(s)	409
StyD4I	CCNGG	3 cut(s)	16, 136, 385
TaaI	ACNGT	2 cut(s)	29, 101
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	1 cut(s)	508
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	1 cut(s)	187
TatI	WGTACW	2 cut(s)	117, 480
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	2 cut(s)	536, 561
Tru9I	TTAA	2 cut(s)	536, 561
TseFI	GTSAC	2 cut(s)	309, 440
TseI	GCWGC	2 cut(s)	197, 275
Tsp45I	GTSAC	2 cut(s)	309, 440
TspDTI	ATGAA	2 cut(s)	419, 470
TspGWI	ACGGA	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	44
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.