Rmu_sc0001616.1_g000011

Chitinase-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001616.1
Physical Location & Seq
Reverse (-)
46843 .. 49819
2977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001616.1_g000011.1.cds

Sequence Viewer

Length: 1257 bp
atggcatgggttttgcatagacggtgggcaaagggtgaggcgatggactggcgtgtgctgtggcgaggtttgggtcgaagtggcaggaggttgcggcgacgtagatcggggaggcacgagttggaacagagcgattctggcggagggcttatggcgtacgagatgtcgtcaggggaggatgggctgagatcagactggcttgatgggctttggagttggactactcctttggatgctcttgggcttattattttggatctgaaccgccccctccaattctctccaccaatgaagacctctccgttggtgtccgcggcggcgttggcggcggtggttctgctcagcgtactatgcgtgaatgccttcgacgaccaggtgtcggcgaccccgacgctggtgaagaaggtcaaaggaaagaaggtgtgcgacaaagggtgggagtgtaaggggtggtcacagtactgttgcaatctcaccattaccgatgtcttccagacctaccaattcgaggagctcttcaaaaaccggaacgcgccggtggctcacgccgttggattctgggacttccagtccttcattctcgccgccgcggttttcgagccacaagggttttgcaccaccggcgggaagcttatgcagatgaaggagctcgccgcttttctcggacacgtcggcagcaagacctcttgtggatacggtgtggccactggaggaccattggcatggggactttgctataacagggaaatgagtcccatgcagtcatactgtgatgacttctacaaatacacatacccctgctctcctggagctgactactacggtcgtggtgctttgcctatctactggaactacaattacggtgcagctggggaagcattgaaggttgatctgttgaaccatccagaatacattgagcagaatgctactcttgccttccaggcagcaatatggaggtggatgactcctatcaagaaatcgcaaccctcagcccatgaagcattcgttggcacttggaagcctaccaagaatgacacattgtccaagcgatttcctggatttggcgcaacaatgaatattctatatggggagcaagtttgtggccagggcgacattgacgccatgaacaacatcgtttcccattaccagtattacctcgaccttttgggtgttggtcgtgaggaagcaggtccccatgaagtgctaacttgtgctgagcagcttgcatttaatccaattaccaaagcatcttcttga

Protein Analysis

418

Amino Acids

46.57

Weight (kDa)

7.5

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1178
AccII CGCG 3 cut(s) 314, 533, 590
AclWI GGATC 1 cut(s) 264
AcoI YGGCCR 2 cut(s) 702, 1102
AcyI GRCGYC 1 cut(s) 1119
AfaI GTAC 3 cut(s) 158, 348, 461
AfiI CCNNNNNNNGG 5 cut(s) 379, 394, 508, 624, 1061
AflIII ACRYGT 1 cut(s) 667
AgsI TTSAA 3 cut(s) 520, 883, 898
AhdI GACNNNNNGTC 3 cut(s) 376, 568, 1039
AjiI CACGTC 1 cut(s) 670
AjnI CCWGG 5 cut(s) 372, 805, 939, 1054, 1104
AjuI GAANNNNNNNTTGG 2 cut(s) 990, 1022
AluBI AGCT 6 cut(s) 514, 631, 649, 812, 869, 1222
AluI AGCT 6 cut(s) 514, 631, 649, 812, 869, 1222
Alw21I GWGCWC 2 cut(s) 516, 651
AlwI GGATC 1 cut(s) 264
AoxI GGCC 2 cut(s) 702, 1102
ApeKI GCWGC 4 cut(s) 675, 866, 944, 1219
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 2 cut(s) 535, 1067
AspS9I GGNCC 2 cut(s) 713, 1190
AsuHPI GGTGA 3 cut(s) 47, 409, 466
AvaII GGWCC 2 cut(s) 713, 1190
BalI TGGCCA 2 cut(s) 704, 1104
BanII GRGCYC 2 cut(s) 516, 651
BauI CACGAG 1 cut(s) 116
BbsI GAAGAC 2 cut(s) 299, 481
Bbv12I GWGCWC 2 cut(s) 516, 651
BbvCI CCTCAGC 1 cut(s) 988
BbvI GCAGC 4 cut(s) 687, 878, 956, 1231
BccI CCATC 4 cut(s) 37, 173, 197, 909
BceAI ACGGC 1 cut(s) 533
BciT130I CCWGG 5 cut(s) 374, 807, 941, 1056, 1106
BciVI GTATCC 1 cut(s) 686
BfuAI ACCTGC 1 cut(s) 1178
BfuI GTATCC 1 cut(s) 686
BglI GCCNNNNNGGC 1 cut(s) 941
BlpI GCTNAGC 2 cut(s) 341, 1215
BmcAI AGTACT 1 cut(s) 461
Bme1390I CCNGG 5 cut(s) 374, 807, 941, 1056, 1106
Bme18I GGWCC 2 cut(s) 713, 1190
BmeRI GACNNNNNGTC 3 cut(s) 376, 568, 1039
BmgBI CACGTC 1 cut(s) 670
BmgT120I GGNCC 2 cut(s) 713, 1190
BmiI GGNNCC 1 cut(s) 1192
BmrFI CCNGG 5 cut(s) 374, 807, 941, 1056, 1106
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 2 cut(s) 299, 481
BpmI CTGGAG 2 cut(s) 729, 828
Bpu10I CCTNAGC 1 cut(s) 988
Bpu1102I GCTNAGC 2 cut(s) 341, 1215
BsaHI GRCGYC 1 cut(s) 1119
BsaJI CCNNGG 3 cut(s) 312, 588, 1105
BsaWI WCCGGW 1 cut(s) 525
Bsc4I CCNNNNNNNGG 5 cut(s) 379, 394, 508, 624, 1061
Bse118I RCCGGY 2 cut(s) 535, 620
Bse1I ACTGG 6 cut(s) 53, 200, 568, 712, 851, 1147
BseBI CCWGG 5 cut(s) 374, 807, 941, 1056, 1106
BseDI CCNNGG 3 cut(s) 312, 588, 1105
BseGI GGATG 4 cut(s) 184, 238, 901, 966
BseLI CCNNNNNNNGG 5 cut(s) 379, 394, 508, 624, 1061
BseMII CTCAG 4 cut(s) 176, 355, 1002, 1206
BseNI ACTGG 6 cut(s) 53, 200, 568, 712, 851, 1147
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 4 cut(s) 687, 878, 956, 1231
BseYI CCCAGC 1 cut(s) 869
BsgI GTGCAG 1 cut(s) 885
Bsh1236I CGCG 3 cut(s) 314, 533, 590
Bsh1285I CGRYCG 1 cut(s) 826
BshFI GGCC 2 cut(s) 704, 1104
BsiEI CGRYCG 1 cut(s) 826
BsiHKAI GWGCWC 2 cut(s) 516, 651
BsiSI CCGG 3 cut(s) 526, 536, 621
BsiWI CGTACG 1 cut(s) 156
BslFI GGGAC 4 cut(s) 575, 738, 741, 1176
BslI CCNNNNNNNGG 5 cut(s) 379, 394, 508, 624, 1061
BsmFI GGGAC 4 cut(s) 575, 738, 741, 1176
BsmI GAATGC 3 cut(s) 364, 928, 1001
BsnI GGCC 2 cut(s) 704, 1104
Bsp1286I GDGCHC 2 cut(s) 516, 651
Bsp143I GATC 4 cut(s) 104, 188, 256, 889
Bsp1720I GCTNAGC 2 cut(s) 341, 1215
BspANI GGCC 2 cut(s) 704, 1104
BspCNI CTCAG 4 cut(s) 177, 354, 1001, 1207
BspFNI CGCG 3 cut(s) 314, 533, 590
BspLI GGNNCC 1 cut(s) 1192
BspMI ACCTGC 1 cut(s) 1178
BspPI GGATC 1 cut(s) 264
BspQI GCTCTTC 1 cut(s) 521
BsrFI RCCGGY 2 cut(s) 535, 620
BsrI ACTGG 6 cut(s) 53, 200, 568, 712, 851, 1147
BssAI RCCGGY 2 cut(s) 535, 620
BssECI CCNNGG 3 cut(s) 312, 588, 1105
BssMI GATC 4 cut(s) 104, 188, 256, 889
BssNI GRCGYC 1 cut(s) 1119
BssSI CACGAG 1 cut(s) 116
Bst2BI CACGAG 1 cut(s) 116
Bst2UI CCWGG 5 cut(s) 374, 807, 941, 1056, 1106
Bst4CI ACNGT 7 cut(s) 24, 459, 464, 698, 770, 824, 863
Bst6I CTCTTC 1 cut(s) 521
BstACI GRCGYC 1 cut(s) 1119
BstC8I GCNNGC 2 cut(s) 651, 1224
BstDEI CTNAG 4 cut(s) 185, 341, 988, 1215
BstDSI CCRYGG 2 cut(s) 312, 588
BstF5I GGATG 4 cut(s) 184, 238, 901, 966
BstFNI CGCG 3 cut(s) 314, 533, 590
BstHHI GCGC 2 cut(s) 535, 1067
BstKTI GATC 4 cut(s) 107, 191, 259, 892
BstMBI GATC 4 cut(s) 104, 188, 256, 889
BstMCI CGRYCG 1 cut(s) 826
BstNI CCWGG 5 cut(s) 374, 807, 941, 1056, 1106
BstSCI CCNGG 5 cut(s) 372, 805, 939, 1054, 1104
BstUI CGCG 3 cut(s) 314, 533, 590
BstV1I GCAGC 4 cut(s) 687, 878, 956, 1231
BstV2I GAAGAC 2 cut(s) 299, 481
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 723
BstYI RGATCY 1 cut(s) 256
BsuI GTATCC 1 cut(s) 686
BsuRI GGCC 2 cut(s) 704, 1104
BtgI CCRYGG 2 cut(s) 312, 588
BtgZI GCGATG 1 cut(s) 56
BtrI CACGTC 1 cut(s) 670
BtsCI GGATG 4 cut(s) 184, 238, 901, 966
BtsIMutI CAGTG 1 cut(s) 705
BveI ACCTGC 1 cut(s) 1178
Cac8I GCNNGC 2 cut(s) 651, 1224
CfoI GCGC 2 cut(s) 535, 1067
Cfr10I RCCGGY 2 cut(s) 535, 620
Cfr13I GGNCC 2 cut(s) 713, 1190
Cfr42I CCGCGG 2 cut(s) 315, 591
CseI GACGC 2 cut(s) 400, 1127
CsiI ACCWGGT 1 cut(s) 372
Csp6I GTAC 3 cut(s) 157, 347, 460
CviAII CATG 6 cut(s) 6, 723, 757, 995, 1123, 1196
CviQI GTAC 3 cut(s) 157, 347, 460
DdeI CTNAG 4 cut(s) 185, 341, 988, 1215
DpnI GATC 4 cut(s) 106, 190, 258, 891
DpnII GATC 4 cut(s) 104, 188, 256, 889
DriI GACNNNNNGTC 3 cut(s) 376, 568, 1039
EaeI YGGCCR 2 cut(s) 702, 1102
Eam1104I CTCTTC 1 cut(s) 521
Eam1105I GACNNNNNGTC 3 cut(s) 376, 568, 1039
EarI CTCTTC 1 cut(s) 521
EciI GGCGGA 1 cut(s) 156
Ecl136II GAGCTC 2 cut(s) 514, 649
Eco24I GRGCYC 2 cut(s) 516, 651
Eco47I GGWCC 2 cut(s) 713, 1190
Eco53kI GAGCTC 2 cut(s) 514, 649
EcoICRI GAGCTC 2 cut(s) 514, 649
EcoO109I RGGNCCY 1 cut(s) 1190
EcoRII CCWGG 5 cut(s) 372, 805, 939, 1054, 1104
EcoT38I GRGCYC 2 cut(s) 516, 651
FaeI CATG 6 cut(s) 9, 726, 760, 998, 1126, 1199
FaqI GGGAC 4 cut(s) 575, 738, 741, 1176
FatI CATG 6 cut(s) 5, 722, 756, 994, 1122, 1195
FauI CCCGC 1 cut(s) 617
FokI GGATG 4 cut(s) 191, 245, 888, 973
FriOI GRGCYC 2 cut(s) 516, 651
GlaI GCGC 2 cut(s) 534, 1066
GsaI CCCAGC 1 cut(s) 873
GsuI CTGGAG 2 cut(s) 729, 828
HaeIII GGCC 2 cut(s) 704, 1104
HapII CCGG 3 cut(s) 526, 536, 621
HgaI GACGC 2 cut(s) 400, 1127
HhaI GCGC 2 cut(s) 535, 1067
Hin1I GRCGYC 1 cut(s) 1119
Hin1II CATG 6 cut(s) 9, 726, 760, 998, 1126, 1199
Hin6I GCGC 2 cut(s) 533, 1065
HinP1I GCGC 2 cut(s) 533, 1065
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 4 cut(s) 134, 555, 751, 964
HpaII CCGG 3 cut(s) 526, 536, 621
HphI GGTGA 3 cut(s) 47, 409, 466
Hpy188I TCNGA 3 cut(s) 193, 261, 665
Hpy188III TCNNGA 5 cut(s) 493, 905, 973, 1178, 1254
Hpy99I CGWCG 4 cut(s) 102, 371, 394, 674
HpyAV CCTTC 7 cut(s) 373, 397, 412, 583, 637, 877, 946
HpyCH4III ACNGT 7 cut(s) 24, 459, 464, 698, 770, 824, 863
HpyCH4IV ACGT 2 cut(s) 100, 669
HpyCH4V TGCA 7 cut(s) 16, 468, 615, 637, 760, 866, 1226
HpyF3I CTNAG 4 cut(s) 185, 341, 988, 1215
HpySE526I ACGT 2 cut(s) 100, 669
Hsp92I GRCGYC 1 cut(s) 1119
Hsp92II CATG 6 cut(s) 9, 726, 760, 998, 1126, 1199
HspAI GCGC 2 cut(s) 533, 1065
KspI CCGCGG 2 cut(s) 315, 591
Kzo9I GATC 4 cut(s) 104, 188, 256, 889
LguI GCTCTTC 1 cut(s) 521
LmnI GCTCC 4 cut(s) 511, 646, 809, 1090
Lsp1109I GCAGC 4 cut(s) 687, 878, 956, 1231
LweI GCATC 1 cut(s) 223
MabI ACCWGGT 1 cut(s) 372
MaeII ACGT 2 cut(s) 100, 669
MaeIII GTNAC 1 cut(s) 453
MalI GATC 4 cut(s) 106, 190, 258, 891
MboI GATC 4 cut(s) 104, 188, 256, 889
MboII GAAGA 5 cut(s) 304, 412, 481, 508, 1242
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 516, 651
MlsI TGGCCA 2 cut(s) 704, 1104
MluCI AATT 4 cut(s) 275, 503, 856, 1236
MluNI TGGCCA 2 cut(s) 704, 1104
MlyI GAGTC 2 cut(s) 760, 958
MmeI TCCRAC 3 cut(s) 102, 197, 532
Mox20I TGGCCA 2 cut(s) 704, 1104
MroXI GAANNNNTTC 1 cut(s) 362
MscI TGGCCA 2 cut(s) 704, 1104
MseI TTAA 1 cut(s) 1230
MslI CAYNNNNRTG 1 cut(s) 721
Msp20I TGGCCA 2 cut(s) 704, 1104
MspA1I CMGCKG 3 cut(s) 314, 590, 869
MspI CCGG 3 cut(s) 526, 536, 621
MspR9I CCNGG 5 cut(s) 374, 807, 941, 1056, 1106
Mva1269I GAATGC 3 cut(s) 364, 928, 1001
MvaI CCWGG 5 cut(s) 374, 807, 941, 1056, 1106
MvnI CGCG 3 cut(s) 314, 533, 590
NdeII GATC 4 cut(s) 104, 188, 256, 889
NlaIII CATG 6 cut(s) 9, 726, 760, 998, 1126, 1199
NlaIV GGNNCC 1 cut(s) 1192
NmuCI GTSAC 1 cut(s) 453
PciSI GCTCTTC 1 cut(s) 521
PcsI WCGNNNNNNNCGW 1 cut(s) 386
PctI GAATGC 3 cut(s) 364, 928, 1001
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 2 cut(s) 134, 555
Pfl23II CGTACG 1 cut(s) 156
PfoI TCCNGGA 2 cut(s) 805, 1054
PleI GAGTC 2 cut(s) 759, 958
PpsI GAGTC 2 cut(s) 759, 958
PpuMI RGGWCCY 1 cut(s) 1190
Psp124BI GAGCTC 2 cut(s) 516, 651
Psp5II RGGWCCY 1 cut(s) 1190
Psp6I CCWGG 5 cut(s) 372, 805, 939, 1054, 1104
PspFI CCCAGC 1 cut(s) 869
PspGI CCWGG 5 cut(s) 372, 805, 939, 1054, 1104
PspLI CGTACG 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 1192
PspPI GGNCC 2 cut(s) 713, 1190
PspPPI RGGWCCY 1 cut(s) 1190
PsrI GAACNNNNNNTAC 2 cut(s) 842, 874
PsuI RGATCY 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 869
RsaI GTAC 3 cut(s) 158, 348, 461
RsaNI GTAC 3 cut(s) 157, 347, 460
RseI CAYNNNNRTG 1 cut(s) 721
SacI GAGCTC 2 cut(s) 516, 651
SacII CCGCGG 2 cut(s) 315, 591
SapI GCTCTTC 1 cut(s) 521
SaqAI TTAA 1 cut(s) 1230
Sau3AI GATC 4 cut(s) 104, 188, 256, 889
Sau96I GGNCC 2 cut(s) 713, 1190
ScaI AGTACT 1 cut(s) 461
SchI GAGTC 2 cut(s) 760, 958
ScrFI CCNGG 5 cut(s) 374, 807, 941, 1056, 1106
SduI GDGCHC 2 cut(s) 516, 651
SexAI ACCWGGT 1 cut(s) 372
SfaNI GCATC 1 cut(s) 223
Sfr303I CCGCGG 2 cut(s) 315, 591
SgrAI CRCCGGYG 2 cut(s) 535, 620
SgrBI CCGCGG 2 cut(s) 315, 591
SinI GGWCC 2 cut(s) 713, 1190
SmiMI CAYNNNNRTG 1 cut(s) 721
Sse9I AATT 4 cut(s) 275, 503, 856, 1236
SspI AATATT 1 cut(s) 1078
SstI GAGCTC 2 cut(s) 516, 651
StyD4I CCNGG 5 cut(s) 372, 805, 939, 1054, 1104
TaaI ACNGT 7 cut(s) 24, 459, 464, 698, 770, 824, 863
TaiI ACGT 2 cut(s) 103, 672
TaqI TCGA 5 cut(s) 76, 366, 507, 597, 1158
TasI AATT 4 cut(s) 275, 503, 856, 1236
TatI WGTACW 1 cut(s) 459
TauI GCSGC 7 cut(s) 97, 317, 320, 329, 587, 590, 656
TfiI GAWTC 2 cut(s) 134, 555
Tru1I TTAA 1 cut(s) 1230
Tru9I TTAA 1 cut(s) 1230
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 4 cut(s) 675, 866, 944, 1219
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 7 cut(s) 305, 565, 656, 1011, 1088, 1139, 1212
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 712
VpaK11BI GGWCC 2 cut(s) 713, 1190
XmnI GAANNNNTTC 1 cut(s) 362
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.