Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009909

Physical Location & Seq

Genomic Coordinates Forward (+)

38826922 .. 38829485

Gene Structure 2564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1278500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTCCCGATCCAATCACCCTTGTCATTTGCCGTCCACTCCCTCCCCAACTTGCACTCCATTTAACCCCCAACACTCCCATCTACCCCAGTCCCGAACGCGACACCCCGTCGAACGCTTACCTCATCAAAACGAAAAGCTCGCTCTTAACTCCCAATTGCCAAGATCTGAAGCAAACCCATTTCTTCTCCTACACCCAAGCATGCAGATTTACGCTGCTGCATTGCTGGCGGTGGTGGCGCTGAGTGTAATCCTGGGTGCCAGCAGCGACGGCGATCACTCGTCCACCGTCGCCAAAGTGAAGACGGTGAAGGGGAAGAAGCTGTGCGACAAAGGGTGGGAGTGTAAAGGGTGGTCAAAGTATTGCTGCAATCTCACCATCTCCGATTTCTTCCAGACTTACCAGTTTGAGAATCTCTTCTCCAAGAGGAACACGCCGGTGGCGCACGCCGTTGGGTTTTGGGATTACCAGGCGTTTATCACCGCCGCGGCGCTTTTCGAGCCTCTTGGATTTGGGACCACCGGGGGGAAGCTTATGCAGATGAAGGAGGTCGCCGCCTTTCTTGGACATGTCGGCAGCAAAACCTCTTGTGGTTACGGTGTGGCCACAGGAGGACCGTCGGCGTGGGGGCTTTGCTACAACAGGGAAATGAGTCCCATGCAGTCGTACTGCGATGACTATTACAAGTACACATATCCCTGCAGTCCTGGAGCTGAATACTATGGTCGTGGTGCTTTGCCAATCTACTGGAACTACAATTACGGTGCAGCTGGAGAAGCTTTGAAGGTGGATCTGTTGAACCATCCAGAATTCATTGAGCAGAATGCTACTCTTGCATTCCAGGCTGCAGTATGGAGGTGGATGACCCCTATCAAGAAGTCACAACCCTCAGCCCACGAAGCATTTGTTGGAGACTGGAAGCCCACCAAGAATGATACTTTGGCTAAGCGGTTTCCTGGATTTGGTGCTACAATGAATCTTCTTTATGGGGAATCAGTTTGTGGCCAGGGTGACATTGATGCCATGAACAACATCGTTTCACATTACCAGTACTACCTTGACCTTATGGGTGTCGGTCGAGAAGAGGCAGGACCTCATAAAGTGCTAACTTGTGCCGAGCAGGTTGCATTCAACCCAATCAAGCCTGCTGTTACTGCATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009825 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010053 GO:0010167 GO:0010337 GO:0010565 GO:0010817 GO:0012505 GO:0016049 GO:0016051 GO:0019222 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0030246 GO:0030247 GO:0031323 GO:0032350 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051273 GO:0051274 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_19

Protein Analysis

389

Amino Acids

42.75

Weight (kDa)

8.17

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	135 - 361	5.1e-61	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05850 AT1G05850
fragaria_vesca	FvH4_4g11930
malus_domestica	MD04G1029400.v1.1 MD04G1030000.v1.1 MD04G1030300.v1.1 MD13G1278500.v1.1
prunus_persica	Prupe.1G179800_v2.0.a1
pyrus_communis	pycom04g02550
rosa_chinensis	RchiOBHm_Chr4g0409551
rosa_laevigata	RLG00000008556
rosa_multiflora	Rmu_sc0000647.1_g000016 Rmu_sc0001616.1_g000011
rosa_roxburghii	Rroxscaffold_5G00354020
rosa_rugosa	Rorug04G0094500
rosa_samantha	Rh4AG156500 Rh4BG155800 Rh4CG166100 Rh4DG149800
rosa_wichuraiana	Rw0G023420 Rw4G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1111
AccB1I	GGYRCC	1 cut(s)	257
AccII	CGCG	2 cut(s)	100, 488
AciI	CCGC	6 cut(s)	230, 483, 486, 488, 555, 949
AclWI	GGATC	2 cut(s)	3, 798
AcoI	YGGCCR	2 cut(s)	603, 1003
AcsI	RAATTY	1 cut(s)	809
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	3 cut(s)	668, 689, 1052
AfiI	CCNNNNNNNGG	2 cut(s)	525, 962
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	3 cut(s)	784, 799, 1132
AhdI	GACNNNNNGTC	1 cut(s)	107
AjnI	CCWGG	6 cut(s)	252, 468, 706, 840, 955, 1005
AjuI	GAANNNNNNNTTGG	4 cut(s)	891, 923, 923, 955
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	6 cut(s)	139, 322, 532, 713, 770, 779
AluI	AGCT	6 cut(s)	139, 322, 532, 713, 770, 779
Alw26I	GTCTC	1 cut(s)	906
AlwI	GGATC	2 cut(s)	3, 798
AoxI	GGCC	2 cut(s)	603, 1003
ApeKI	GCWGC	7 cut(s)	215, 218, 264, 366, 576, 767, 845
ApoI	RAATTY	1 cut(s)	809
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	3 cut(s)	241, 445, 493
AspS9I	GGNCC	3 cut(s)	516, 614, 1091
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	5 cut(s)	8, 319, 367, 472, 1022
AvaII	GGWCC	3 cut(s)	516, 614, 1091
BalI	TGGCCA	2 cut(s)	605, 1005
BanI	GGYRCC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	308
BbvCI	CCTCAGC	1 cut(s)	889
BbvI	GCAGC	7 cut(s)	202, 205, 276, 353, 588, 779, 832
BccI	CCATC	3 cut(s)	87, 386, 810
BceAI	ACGGC	3 cut(s)	16, 286, 434
BcgI	CGANNNNNNTGC	2 cut(s)	1106, 1140
BciT130I	CCWGG	6 cut(s)	254, 470, 708, 842, 957, 1007
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	906
BfmI	CTRYAG	2 cut(s)	700, 846
BfoI	RGCGCY	2 cut(s)	242, 494
BfuAI	ACCTGC	1 cut(s)	1111
BglII	AGATCT	1 cut(s)	164
BlpI	GCTNAGC	1 cut(s)	945
BmcAI	AGTACT	1 cut(s)	1052
Bme1390I	CCNGG	7 cut(s)	254, 470, 523, 708, 842, 957, 1007
Bme18I	GGWCC	3 cut(s)	516, 614, 1091
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmgT120I	GGNCC	3 cut(s)	516, 614, 1091
BmiI	GGNNCC	2 cut(s)	259, 517
BmrFI	CCNGG	7 cut(s)	254, 470, 523, 708, 842, 957, 1007
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	1009
BmuI	ACTGGG	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	308
BpmI	CTGGAG	2 cut(s)	729, 792
Bpu10I	CCTNAGC	1 cut(s)	889
Bpu1102I	GCTNAGC	1 cut(s)	945
BpuMI	CCSGG	1 cut(s)	523
BsaJI	CCNNGG	4 cut(s)	253, 486, 522, 1006
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 962
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	5 cut(s)	88, 403, 752, 920, 1048
Bse3DI	GCAATG	1 cut(s)	221
BseBI	CCWGG	6 cut(s)	254, 470, 708, 842, 957, 1007
BseDI	CCNNGG	4 cut(s)	253, 486, 522, 1006
BseGI	GGATG	2 cut(s)	802, 867
BseLI	CCNNNNNNNGG	2 cut(s)	525, 962
BseMI	GCAATG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	233, 903
BseNI	ACTGG	5 cut(s)	88, 403, 752, 920, 1048
BseXI	GCAGC	7 cut(s)	202, 205, 276, 353, 588, 779, 832
BsgI	GTGCAG	1 cut(s)	786
Bsh1236I	CGCG	2 cut(s)	100, 488
Bsh1285I	CGRYCG	1 cut(s)	1078
BshFI	GGCC	2 cut(s)	605, 1005
BshNI	GGYRCC	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	1078
BsiSI	CCGG	2 cut(s)	437, 522
BslFI	GGGAC	3 cut(s)	76, 529, 639
BslI	CCNNNNNNNGG	2 cut(s)	525, 962
BsmAI	GTCTC	1 cut(s)	906
BsmFI	GGGAC	3 cut(s)	76, 529, 639
BsmI	GAATGC	3 cut(s)	829, 836, 1127
BsnI	GGCC	2 cut(s)	605, 1005
Bsp143I	GATC	4 cut(s)	8, 164, 274, 790
Bsp1720I	GCTNAGC	1 cut(s)	945
BspACI	CCGC	6 cut(s)	230, 483, 486, 488, 555, 949
BspANI	GGCC	2 cut(s)	605, 1005
BspCNI	CTCAG	2 cut(s)	234, 902
BspFNI	CGCG	2 cut(s)	100, 488
BspLI	GGNNCC	2 cut(s)	259, 517
BspMAI	CTGCAG	2 cut(s)	704, 850
BspMI	ACCTGC	1 cut(s)	1111
BspPI	GGATC	2 cut(s)	3, 798
BspT107I	GGYRCC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	221
BsrFI	RCCGGY	1 cut(s)	436
BsrI	ACTGG	5 cut(s)	88, 403, 752, 920, 1048
BssAI	RCCGGY	1 cut(s)	436
BssECI	CCNNGG	4 cut(s)	253, 486, 522, 1006
BssMI	GATC	4 cut(s)	8, 164, 274, 790
Bst2UI	CCWGG	6 cut(s)	254, 470, 708, 842, 957, 1007
Bst4CI	ACNGT	5 cut(s)	289, 307, 599, 618, 764
Bst6I	CTCTTC	2 cut(s)	422, 1077
BstC8I	GCNNGC	6 cut(s)	141, 203, 228, 262, 447, 1146
BstDEI	CTNAG	3 cut(s)	242, 889, 945
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	2 cut(s)	802, 867
BstFNI	CGCG	2 cut(s)	100, 488
BstH2I	RGCGCY	2 cut(s)	242, 494
BstHHI	GCGC	3 cut(s)	241, 445, 493
BstKTI	GATC	4 cut(s)	11, 167, 277, 793
BstMAI	GTCTC	1 cut(s)	906
BstMBI	GATC	4 cut(s)	8, 164, 274, 790
BstMCI	CGRYCG	1 cut(s)	1078
BstNI	CCWGG	6 cut(s)	254, 470, 708, 842, 957, 1007
BstNSI	RCATGY	2 cut(s)	205, 572
BstSCI	CCNGG	7 cut(s)	252, 468, 521, 706, 840, 955, 1005
BstSFI	CTRYAG	2 cut(s)	700, 846
BstUI	CGCG	2 cut(s)	100, 488
BstV1I	GCAGC	7 cut(s)	202, 205, 276, 353, 588, 779, 832
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	2 cut(s)	164, 790
BstXI	CCANNNNNNTGG	1 cut(s)	747
BstYI	RGATCY	2 cut(s)	164, 790
BsuRI	GGCC	2 cut(s)	605, 1005
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	687
BtsCI	GGATG	2 cut(s)	802, 867
BveI	ACCTGC	1 cut(s)	1111
Cac8I	GCNNGC	6 cut(s)	141, 203, 228, 262, 447, 1146
CfoI	GCGC	3 cut(s)	241, 445, 493
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	3 cut(s)	516, 614, 1091
Cfr42I	CCGCGG	1 cut(s)	489
Csp6I	GTAC	3 cut(s)	667, 688, 1051
CviAII	CATG	4 cut(s)	202, 569, 658, 1024
CviQI	GTAC	3 cut(s)	667, 688, 1051
DdeI	CTNAG	3 cut(s)	242, 889, 945
DpnI	GATC	4 cut(s)	10, 166, 276, 792
DpnII	GATC	4 cut(s)	8, 164, 274, 790
DriI	GACNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	2 cut(s)	603, 1003
Eam1104I	CTCTTC	2 cut(s)	422, 1077
Eam1105I	GACNNNNNGTC	1 cut(s)	107
EarI	CTCTTC	2 cut(s)	422, 1077
Eco47I	GGWCC	3 cut(s)	516, 614, 1091
Eco57I	CTGAAG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	1091
EcoRI	GAATTC	1 cut(s)	809
EcoRII	CCWGG	6 cut(s)	252, 468, 706, 840, 955, 1005
FaeI	CATG	4 cut(s)	205, 572, 661, 1027
FaqI	GGGAC	3 cut(s)	76, 529, 639
FatI	CATG	4 cut(s)	201, 568, 657, 1023
FokI	GGATG	2 cut(s)	789, 874
GlaI	GCGC	3 cut(s)	240, 444, 492
GsuI	CTGGAG	2 cut(s)	729, 792
HaeII	RGCGCY	2 cut(s)	242, 494
HaeIII	GGCC	2 cut(s)	605, 1005
HapII	CCGG	2 cut(s)	437, 522
HhaI	GCGC	3 cut(s)	241, 445, 493
Hin1II	CATG	4 cut(s)	205, 572, 661, 1027
Hin6I	GCGC	3 cut(s)	239, 443, 491
HinP1I	GCGC	3 cut(s)	239, 443, 491
HindIII	AAGCTT	2 cut(s)	530, 777
HinfI	GANTC	4 cut(s)	412, 652, 976, 992
HpaII	CCGG	2 cut(s)	437, 522
HphI	GGTGA	5 cut(s)	8, 319, 367, 472, 1022
Hpy166II	GTNNAC	3 cut(s)	36, 285, 690
Hpy188I	TCNGA	2 cut(s)	169, 385
Hpy188III	TCNNGA	7 cut(s)	6, 93, 394, 806, 874, 1079, 1164
Hpy8I	GTNNAC	3 cut(s)	36, 285, 690
Hpy99I	CGWCG	4 cut(s)	113, 272, 293, 622
HpyAV	CCTTC	3 cut(s)	304, 538, 778
HpyCH4III	ACNGT	5 cut(s)	289, 307, 599, 618, 764
HpyF3I	CTNAG	3 cut(s)	242, 889, 945
Hsp92II	CATG	4 cut(s)	205, 572, 661, 1027
HspAI	GCGC	3 cut(s)	239, 443, 491
KspI	CCGCGG	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	8, 164, 274, 790
LmnI	GCTCC	1 cut(s)	710
Lsp1109I	GCAGC	7 cut(s)	202, 205, 276, 353, 588, 779, 832
LweI	GCATC	1 cut(s)	1009
MaeIII	GTNAC	4 cut(s)	593, 879, 1010, 1150
MalI	GATC	4 cut(s)	10, 166, 276, 792
MboI	GATC	4 cut(s)	8, 164, 274, 790
MboII	GAAGA	8 cut(s)	176, 313, 328, 382, 409, 971, 1094, 1152
MfeI	CAATTG	1 cut(s)	155
MflI	RGATCY	2 cut(s)	164, 790
MlsI	TGGCCA	2 cut(s)	605, 1005
MluCI	AATT	3 cut(s)	155, 757, 809
MluNI	TGGCCA	2 cut(s)	605, 1005
MlyI	GAGTC	1 cut(s)	661
MmeI	TCCRAC	1 cut(s)	889
Mox20I	TGGCCA	2 cut(s)	605, 1005
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	2 cut(s)	605, 1005
MseI	TTAA	2 cut(s)	63, 147
MslI	CAYNNNNRTG	1 cut(s)	437
Msp20I	TGGCCA	2 cut(s)	605, 1005
MspA1I	CMGCKG	2 cut(s)	488, 770
MspI	CCGG	2 cut(s)	437, 522
MspR9I	CCNGG	7 cut(s)	254, 470, 523, 708, 842, 957, 1007
MunI	CAATTG	1 cut(s)	155
Mva1269I	GAATGC	3 cut(s)	829, 836, 1127
MvaI	CCWGG	6 cut(s)	254, 470, 708, 842, 957, 1007
MvnI	CGCG	2 cut(s)	100, 488
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	4 cut(s)	8, 164, 274, 790
NlaIII	CATG	4 cut(s)	205, 572, 661, 1027
NlaIV	GGNNCC	2 cut(s)	259, 517
NmeAIII	GCCGAG	1 cut(s)	1141
NmuCI	GTSAC	2 cut(s)	879, 1010
NspI	RCATGY	2 cut(s)	205, 572
OliI	CACNNNNGTG	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	205
PciI	ACATGT	1 cut(s)	568
PctI	GAATGC	3 cut(s)	829, 836, 1127
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	412, 976, 992
PfoI	TCCNGGA	2 cut(s)	706, 955
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
PpuMI	RGGWCCY	1 cut(s)	1091
PscI	ACATGT	1 cut(s)	568
Psp5II	RGGWCCY	1 cut(s)	1091
Psp6I	CCWGG	6 cut(s)	252, 468, 706, 840, 955, 1005
PspGI	CCWGG	6 cut(s)	252, 468, 706, 840, 955, 1005
PspN4I	GGNNCC	2 cut(s)	259, 517
PspPI	GGNCC	3 cut(s)	516, 614, 1091
PspPPI	RGGWCCY	1 cut(s)	1091
PsrI	GAACNNNNNNTAC	2 cut(s)	743, 775
PstI	CTGCAG	2 cut(s)	704, 850
PsuI	RGATCY	2 cut(s)	164, 790
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	3 cut(s)	668, 689, 1052
RsaNI	GTAC	3 cut(s)	667, 688, 1051
RseI	CAYNNNNRTG	1 cut(s)	437
SacII	CCGCGG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	63, 147
Sau3AI	GATC	4 cut(s)	8, 164, 274, 790
Sau96I	GGNCC	3 cut(s)	516, 614, 1091
ScaI	AGTACT	1 cut(s)	1052
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	7 cut(s)	254, 470, 523, 708, 842, 957, 1007
SfaNI	GCATC	1 cut(s)	1009
SfcI	CTRYAG	2 cut(s)	700, 846
Sfr303I	CCGCGG	1 cut(s)	489
SgrAI	CRCCGGYG	1 cut(s)	436
SgrBI	CCGCGG	1 cut(s)	489
SinI	GGWCC	3 cut(s)	516, 614, 1091
SmiMI	CAYNNNNRTG	1 cut(s)	437
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	3 cut(s)	155, 757, 809
SsiI	CCGC	6 cut(s)	230, 483, 486, 488, 555, 949
StyD4I	CCNGG	7 cut(s)	252, 468, 521, 706, 840, 955, 1005
TaaI	ACNGT	5 cut(s)	289, 307, 599, 618, 764
TaqI	TCGA	3 cut(s)	111, 498, 1078
TaqII	GACCGA	1 cut(s)	1064
TasI	AATT	3 cut(s)	155, 757, 809
TatI	WGTACW	2 cut(s)	687, 1050
TauI	GCSGC	3 cut(s)	488, 491, 557
TfiI	GAWTC	3 cut(s)	412, 976, 992
Tru1I	TTAA	2 cut(s)	63, 147
Tru9I	TTAA	2 cut(s)	63, 147
TseFI	GTSAC	2 cut(s)	879, 1010
TseI	GCWGC	7 cut(s)	215, 218, 264, 366, 576, 767, 845
Tsp45I	GTSAC	2 cut(s)	879, 1010
TspDTI	ATGAA	4 cut(s)	557, 802, 989, 1040
VpaK11BI	GGWCC	3 cut(s)	516, 614, 1091
XapI	RAATTY	1 cut(s)	809
XceI	RCATGY	2 cut(s)	205, 572
XmnI	GAANNNNTTC	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.