Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010888

Physical Location & Seq

Genomic Coordinates Reverse (-)

1828340 .. 1829983

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCCGGCGACGGTGATTTGTTGCGCCGACGAAGCTGCTCTCTGTCCTCAATGCGACATCGAGATTCACGCCGCTAACAAACTCGCTAGCAAGCACCAACGTCTTCATCTTAATTCCCTCTCCACCAAATTCCCTCGTTGCGATATCTGCCAAGAGAAGGCAGCTTTCATTTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTGCGATGAATCCATCCACGTGGCTAATTCTCGATCTGCTAATCACCAGAGGTTCTTAGCCACTGGGATCAAAGTAGCTCTGACCTCAACTATATGTAGTAAAGAAATTGAGAAGAATCAACCTGAGCCTTCCAACAACCAACAGAAGGCTAATCAGATTCCTGCTAAATCCACAAGCCAGCAGCAACAACAACCTTCTTCTGCTACTCCACTTCCCTGGGCTGTTGACGATTTCTTTCACTTCTCTGATATTGAATCCACCGACAAGAAAGGACAGCTTGATCTTGGGGCAGGGGAGTTGGATTGGTTTTCAGACATGGGATTCTTCGGTGATCAGATTAATGACAAGGCTCTTCCTGCAGCTGAAGTTCCTGAGCTTTCTGTTTCGCATTTAGGTCATGTTCATTCATACAAACCTATGAAGTCAAATGTTTCACACAAGAAGCCGAGGTTTGAGACCAGATATGATGATGATGATGAGGAACACTTCATTGTCCCTGATCTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010099 GO:0010100 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

248

Amino Acids

27.64

Weight (kDa)

5.42

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	55 - 95	1.7e-07	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06040 AT1G06040 AT2G31380
fragaria_vesca	FvH4_4g10930 FvH4_4g10930
malus_domestica	MD04G1042700.v1.1 MD09G1251100.v1.1 MD17G1243400.v1.1
prunus_persica	Prupe.1G197100_v2.0.a1 Prupe.3G155900_v2.0.a1
pyrus_communis	pycom04g03750 pycom17g24600
rosa_chinensis	RchiOBHm_Chr4g0406441
rosa_laevigata	RLG00000008771
rosa_multiflora	Rmu_ssc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_5G00351320
rosa_rugosa	Rorug04G0071300
rosa_samantha	Rh4AG138300 Rh4BG135500
rosa_wichuraiana	Rw4G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	621
AcvI	CACGTG	1 cut(s)	256
AfiI	CCNNNNNNNGG	3 cut(s)	187, 382, 740
AgsI	TTSAA	1 cut(s)	491
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	8 cut(s)	32, 65, 194, 221, 314, 514, 599, 613
AluI	AGCT	8 cut(s)	32, 65, 194, 221, 314, 514, 599, 613
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	686
AlwI	GGATC	1 cut(s)	311
AlwNI	CAGNNNCTG	1 cut(s)	237
ApeKI	GCWGC	4 cut(s)	65, 191, 418, 596
ApoI	RAATTY	1 cut(s)	158
AseI	ATTAAT	1 cut(s)	576
AspLEI	GCGC	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	55, 272, 578
AsuNHI	GCTAGC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	223
BbrPI	CACGTG	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	4 cut(s)	52, 203, 430, 608
BccI	CCATC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	1 cut(s)	454
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	686
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	594
BisI	GCNGC	5 cut(s)	66, 102, 192, 419, 597
BlsI	GCNGC	5 cut(s)	67, 103, 193, 420, 598
Bme1390I	CCNGG	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	454
BmrI	ACTGGG	1 cut(s)	309
BmtI	GCTAGC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	125
Bpu10I	CCTNAGC	2 cut(s)	360, 609
BsaAI	YACGTR	1 cut(s)	256
BsaI	GGTCTC	1 cut(s)	686
BsaJI	CCNNGG	3 cut(s)	452, 453, 683
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 382, 740
Bse1I	ACTGG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	3 cut(s)	452, 453, 683
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	3 cut(s)	187, 382, 740
BseMII	CTCAG	2 cut(s)	351, 600
BseNI	ACTGG	1 cut(s)	304
BseXI	GCAGC	4 cut(s)	52, 203, 430, 608
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	2 cut(s)	248, 716
BslI	CCNNNNNNNGG	3 cut(s)	187, 382, 740
BsmAI	GTCTC	1 cut(s)	686
BsmFI	GGGAC	2 cut(s)	248, 716
Bso31I	GGTCTC	1 cut(s)	686
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	5 cut(s)	269, 303, 517, 568, 736
BspACI	CCGC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	352, 601
BspMAI	CTGCAG	1 cut(s)	598
BspOI	GCTAGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	311
BspQI	GCTCTTC	1 cut(s)	594
BspTNI	GGTCTC	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	3 cut(s)	452, 453, 683
BssMI	GATC	5 cut(s)	269, 303, 517, 568, 736
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	2 cut(s)	12, 43
Bst6I	CTCTTC	1 cut(s)	594
BstAPI	GCANNNNNTGC	1 cut(s)	237
BstBAI	YACGTR	1 cut(s)	256
BstC8I	GCNNGC	3 cut(s)	118, 122, 416
BstDEI	CTNAG	3 cut(s)	292, 360, 609
BstF5I	GGATG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	5 cut(s)	272, 306, 520, 571, 739
BstMAI	GTCTC	1 cut(s)	686
BstMBI	GATC	5 cut(s)	269, 303, 517, 568, 736
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 177, 237, 593
BstNI	CCWGG	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	452
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	4 cut(s)	52, 203, 430, 608
BstV2I	GAAGAC	1 cut(s)	125
BstXI	CCANNNNNNTGG	2 cut(s)	256, 453
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	17, 297
Cac8I	GCNNGC	3 cut(s)	118, 122, 416
CaiI	CAGNNNCTG	1 cut(s)	237
CfoI	GCGC	1 cut(s)	56
CviAII	CATG	2 cut(s)	553, 635
DdeI	CTNAG	3 cut(s)	292, 360, 609
DpnI	GATC	5 cut(s)	271, 305, 519, 570, 738
DpnII	GATC	5 cut(s)	269, 303, 517, 568, 736
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Ecl136II	GAGCTC	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	686
Eco32I	GATATC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	621
Eco72I	CACGTG	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	223
FaeI	CATG	2 cut(s)	556, 638
FaiI	YATR	7 cut(s)	329, 331, 554, 636, 646, 656, 702
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	2 cut(s)	248, 716
FatI	CATG	2 cut(s)	552, 634
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	5 cut(s)	66, 102, 192, 419, 597
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	5 cut(s)	66, 102, 192, 419, 597
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	5 cut(s)	66, 102, 192, 419, 597
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	556, 638
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	6 cut(s)	94, 245, 352, 394, 491, 558
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	3 cut(s)	55, 272, 578
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	5 cut(s)	318, 393, 484, 550, 573
Hpy188III	TCNNGA	3 cut(s)	91, 267, 608
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	2 cut(s)	43, 62
HpyAV	CCTTC	4 cut(s)	181, 375, 376, 441
HpyCH4III	ACNGT	2 cut(s)	12, 43
HpyCH4IV	ACGT	2 cut(s)	130, 255
HpyCH4V	TGCA	2 cut(s)	231, 596
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 177, 237, 593
HpyF3I	CTNAG	3 cut(s)	292, 360, 609
HpySE526I	ACGT	2 cut(s)	130, 255
Hsp92II	CATG	2 cut(s)	556, 638
HspAI	GCGC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	5 cut(s)	269, 303, 517, 568, 736
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	4 cut(s)	52, 203, 430, 608
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	2 cut(s)	130, 255
MalI	GATC	5 cut(s)	271, 305, 519, 570, 738
MboI	GATC	5 cut(s)	269, 303, 517, 568, 736
MboII	GAAGA	6 cut(s)	16, 125, 361, 426, 553, 581
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	4 cut(s)	142, 158, 262, 342
MmeI	TCCRAC	2 cut(s)	393, 516
MnlI	CCTC	8 cut(s)	87, 158, 174, 205, 279, 331, 678, 709
MseI	TTAA	2 cut(s)	141, 576
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	4 cut(s)	62, 177, 237, 593
NdeII	GATC	5 cut(s)	269, 303, 517, 568, 736
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	2 cut(s)	556, 638
NmeAIII	GCCGAG	1 cut(s)	708
PasI	CCCWGGG	1 cut(s)	453
PciSI	GCTCTTC	1 cut(s)	594
PfeI	GAWTC	6 cut(s)	94, 245, 352, 394, 491, 558
PkrI	GCNGC	5 cut(s)	67, 103, 193, 420, 598
PmaCI	CACGTG	1 cut(s)	256
PmlI	CACGTG	1 cut(s)	256
Ppu21I	YACGTR	1 cut(s)	256
PshBI	ATTAAT	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	452
PspCI	CACGTG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	599
RseI	CAYNNNNRTG	1 cut(s)	254
SacI	GAGCTC	1 cut(s)	223
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	141, 576
SatI	GCNGC	5 cut(s)	66, 102, 192, 419, 597
Sau3AI	GATC	5 cut(s)	269, 303, 517, 568, 736
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	142, 158, 262, 342
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	452
TaaI	ACNGT	2 cut(s)	12, 43
TaiI	ACGT	2 cut(s)	133, 258
TaqI	TCGA	2 cut(s)	90, 268
TasI	AATT	4 cut(s)	142, 158, 262, 342
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	6 cut(s)	94, 245, 352, 394, 491, 558
Tru1I	TTAA	2 cut(s)	141, 576
Tru9I	TTAA	2 cut(s)	141, 576
TscAI	CASTG	2 cut(s)	17, 304
TseI	GCWGC	4 cut(s)	65, 191, 418, 596
TspDTI	ATGAA	8 cut(s)	17, 125, 187, 258, 629, 633, 671, 715
TspRI	CASTG	2 cut(s)	17, 304
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	1 cut(s)	158
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.