Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010888

Physical Location & Seq

Genomic Coordinates Forward (+)

17409928 .. 17411753

Gene Structure 1826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G155900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAAATTCAGTGTGATGTGTGCGAGAAGGCACCGGCGACAGTGATTTGTTGCGCAGATGAGGCGGCGCTGTGCGCCAAATGTGACGTTGAAGTGCATGCAGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTCCTTCAGTGTCTCTCCAAGTTGAACAAACTCCCTAGATGTGACATTTGCCAAGACAAGGCAGCTTTTATATTCTGTGTTGAAGACAGAGCCCTCTTTTGCCAGGATTGTGACGGGTCAGTTCATTCGGCCAATAGCCACTCTGCCAACCACCAGAGGTTCCTCGCGACCGGAATCCGGGTGGCATTGAGCTCCAGTTGTACTACTAAGGACACTGAAACAAGTAGCTTGGAGCCACCCAGTCATGGCTCGCAGCAGATTTCAACAAAATTGCCAACACCTCAGCCTTCTGGCTTCTCATCCCCTTGGGGGGTTGATGACTTGCTGCAATTATCAGATTTTGAATCTTCTGACAAGAAAGGGTCGCTTGAGTTTGGAGAGCTTGAATGGATAGCAGATATGGGTCTTTTCGGTGAGCAGTTTCCGGAGGAAGCCTTGGCAGCTGCTGAAGTTCCTCAGCTTCCGGTATCACAGCAACCCAATTTTACCTCATATAGACCCCCCAAATCGAACAATCCATACAAGAAGCCAAGAATTGTAATGGCAGAGGATGATGATGAGCACTTTACTGTTCCTGATCTTGGAGATTTTAGACATGTATCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010099 GO:0010100 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

248

Amino Acids

27.09

Weight (kDa)

5.06

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06040 AT1G06040 AT2G31380
fragaria_vesca	FvH4_4g10930 FvH4_4g10930
malus_domestica	MD04G1042700.v1.1 MD09G1251100.v1.1 MD17G1243400.v1.1
prunus_persica	Prupe.1G197100_v2.0.a1 Prupe.3G155900_v2.0.a1
pyrus_communis	pycom04g03750 pycom17g24600
rosa_chinensis	RchiOBHm_Chr4g0406441
rosa_laevigata	RLG00000008771
rosa_multiflora	Rmu_ssc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_5G00351320
rosa_rugosa	Rorug04G0071300
rosa_samantha	Rh4AG138300 Rh4BG135500
rosa_wichuraiana	Rw4G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	55
AccB1I	GGYRCC	1 cut(s)	31
AccII	CGCG	1 cut(s)	302
AccIII	TCCGGA	1 cut(s)	559
AciI	CCGC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	6
AcuI	CTGAAG	2 cut(s)	125, 603
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	6 cut(s)	193, 312, 380, 444, 445, 716
AflIII	ACRYGT	1 cut(s)	730
AgsI	TTSAA	6 cut(s)	92, 160, 218, 399, 479, 521
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	7 cut(s)	112, 200, 327, 363, 517, 578, 595
AluI	AGCT	7 cut(s)	112, 200, 327, 363, 517, 578, 595
Alw21I	GWGCWC	2 cut(s)	329, 699
Alw26I	GTCTC	1 cut(s)	152
AlwNI	CAGNNNCTG	1 cut(s)	581
Aor13HI	TCCGGA	1 cut(s)	559
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	6 cut(s)	101, 197, 388, 460, 575, 578
ApoI	RAATTY	1 cut(s)	6
AspLEI	GCGC	3 cut(s)	56, 70, 77
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	560
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	2 cut(s)	229, 329
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	329, 699
BbvCI	CCTCAGC	2 cut(s)	417, 591
BbvI	GCAGC	6 cut(s)	113, 209, 400, 447, 565, 587
BciT130I	CCWGG	1 cut(s)	239
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	71
BisI	GCNGC	7 cut(s)	66, 102, 198, 389, 461, 576, 579
BlsI	GCNGC	7 cut(s)	67, 103, 199, 390, 462, 577, 580
Bme1390I	CCNGG	2 cut(s)	239, 314
BmiI	GGNNCC	3 cut(s)	33, 296, 369
BmrFI	CCNGG	2 cut(s)	239, 314
BmrI	ACTGGG	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	313
Bpu10I	CCTNAGC	2 cut(s)	417, 591
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	440, 570
BsaWI	WCCGGW	3 cut(s)	305, 559, 598
Bsc4I	CCNNNNNNNGG	6 cut(s)	193, 312, 380, 444, 445, 716
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	330, 375
BseAI	TCCGGA	1 cut(s)	559
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	440, 570
BseGI	GGATG	2 cut(s)	434, 691
BseLI	CCNNNNNNNGG	6 cut(s)	193, 312, 380, 444, 445, 716
BseMII	CTCAG	2 cut(s)	431, 605
BseNI	ACTGG	2 cut(s)	330, 375
BseXI	GCAGC	6 cut(s)	113, 209, 400, 447, 565, 587
Bsh1236I	CGCG	1 cut(s)	302
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	2 cut(s)	329, 699
BsiSI	CCGG	5 cut(s)	35, 306, 313, 560, 599
BslI	CCNNNNNNNGG	6 cut(s)	193, 312, 380, 444, 445, 716
BsmAI	GTCTC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	266
Bsp1286I	GDGCHC	3 cut(s)	229, 329, 699
Bsp13I	TCCGGA	1 cut(s)	559
Bsp143I	GATC	1 cut(s)	712
Bsp68I	TCGCGA	1 cut(s)	302
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	2 cut(s)	430, 604
BspEI	TCCGGA	1 cut(s)	559
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	3 cut(s)	33, 296, 369
BspT107I	GGYRCC	1 cut(s)	31
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	330, 375
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	2 cut(s)	440, 570
BssMI	GATC	1 cut(s)	712
BssT1I	CCWWGG	2 cut(s)	440, 570
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	2 cut(s)	43, 706
BstC8I	GCNNGC	5 cut(s)	99, 114, 118, 122, 386
BstDEI	CTNAG	3 cut(s)	342, 417, 591
BstF5I	GGATG	2 cut(s)	434, 691
BstFNI	CGCG	1 cut(s)	302
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	3 cut(s)	56, 70, 77
BstKTI	GATC	1 cut(s)	715
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	712
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 74, 130, 575
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	2 cut(s)	101, 734
BstSCI	CCNGG	2 cut(s)	237, 312
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	6 cut(s)	113, 209, 400, 447, 565, 587
BstV2I	GAAGAC	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	2 cut(s)	434, 691
BtsIMutI	CAGTG	4 cut(s)	17, 48, 149, 348
BtuMI	TCGCGA	1 cut(s)	302
Cac8I	GCNNGC	5 cut(s)	99, 114, 118, 122, 386
CaiI	CAGNNNCTG	1 cut(s)	581
CfoI	GCGC	3 cut(s)	56, 70, 77
Cfr10I	RCCGGY	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	3 cut(s)	98, 380, 731
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	3 cut(s)	342, 417, 591
DpnI	GATC	1 cut(s)	714
DpnII	GATC	1 cut(s)	712
EaeI	YGGCCR	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	440, 570
Eco24I	GRGCYC	2 cut(s)	229, 329
Eco53kI	GAGCTC	1 cut(s)	327
Eco57I	CTGAAG	2 cut(s)	125, 603
EcoICRI	GAGCTC	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	2 cut(s)	440, 570
EcoT38I	GRGCYC	2 cut(s)	229, 329
ErhI	CCWWGG	2 cut(s)	440, 570
FaeI	CATG	3 cut(s)	101, 383, 734
FaiI	YATR	8 cut(s)	99, 206, 381, 536, 628, 630, 655, 732
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FatI	CATG	3 cut(s)	97, 379, 730
Fnu4HI	GCNGC	7 cut(s)	66, 102, 198, 389, 461, 576, 579
FokI	GGATG	2 cut(s)	421, 698
FriOI	GRGCYC	2 cut(s)	229, 329
Fsp4HI	GCNGC	7 cut(s)	66, 102, 198, 389, 461, 576, 579
FspBI	CTAG	1 cut(s)	171
FspI	TGCGCA	1 cut(s)	55
GlaI	GCGC	3 cut(s)	55, 69, 76
GluI	GCNGC	7 cut(s)	66, 102, 198, 389, 461, 576, 579
GsuI	CTGGAG	1 cut(s)	313
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	5 cut(s)	35, 306, 313, 560, 599
HhaI	GCGC	3 cut(s)	56, 70, 77
Hin1II	CATG	3 cut(s)	101, 383, 734
Hin6I	GCGC	3 cut(s)	54, 68, 75
HinP1I	GCGC	3 cut(s)	54, 68, 75
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	309, 479
HpaII	CCGG	5 cut(s)	35, 306, 313, 560, 599
HphI	GGTGA	1 cut(s)	560
Hpy188I	TCNGA	2 cut(s)	472, 487
Hpy188III	TCNNGA	3 cut(s)	301, 560, 710
HpyAV	CCTTC	3 cut(s)	22, 149, 432
HpyCH4III	ACNGT	2 cut(s)	43, 706
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	4 cut(s)	97, 101, 116, 463
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 74, 130, 575
HpyF3I	CTNAG	3 cut(s)	342, 417, 591
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	101, 383, 734
HspAI	GCGC	3 cut(s)	54, 68, 75
Kpn2I	TCCGGA	1 cut(s)	559
Kzo9I	GATC	1 cut(s)	712
LmnI	GCTCC	2 cut(s)	332, 367
Lsp1109I	GCAGC	6 cut(s)	113, 209, 400, 447, 565, 587
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	83, 176, 245
MalI	GATC	1 cut(s)	714
MboI	GATC	1 cut(s)	712
MboII	GAAGA	2 cut(s)	230, 474
MhlI	GDGCHC	3 cut(s)	229, 329, 699
MluCI	AATT	5 cut(s)	6, 404, 464, 616, 669
MroI	TCCGGA	1 cut(s)	559
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	5 cut(s)	35, 306, 313, 560, 599
MspR9I	CCNGG	2 cut(s)	239, 314
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	4 cut(s)	62, 74, 130, 575
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	1 cut(s)	712
NlaIII	CATG	3 cut(s)	101, 383, 734
NlaIV	GGNNCC	3 cut(s)	33, 296, 369
NmuCI	GTSAC	3 cut(s)	83, 176, 245
NruI	TCGCGA	1 cut(s)	302
NsbI	TGCGCA	1 cut(s)	55
NspI	RCATGY	2 cut(s)	101, 734
PaeI	GCATGC	1 cut(s)	101
PciI	ACATGT	1 cut(s)	730
PfeI	GAWTC	2 cut(s)	309, 479
PkrI	GCNGC	7 cut(s)	67, 103, 199, 390, 462, 577, 580
PscI	ACATGT	1 cut(s)	730
Psp124BI	GAGCTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	3 cut(s)	33, 296, 369
PsrI	GAACNNNNNNTAC	2 cut(s)	638, 670
PstNI	CAGNNNCTG	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	578
RruI	TCGCGA	1 cut(s)	302
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
SacI	GAGCTC	1 cut(s)	329
SatI	GCNGC	7 cut(s)	66, 102, 198, 389, 461, 576, 579
Sau3AI	GATC	1 cut(s)	712
ScrFI	CCNGG	2 cut(s)	239, 314
SduI	GDGCHC	3 cut(s)	229, 329, 699
SgrAI	CRCCGGYG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SphI	GCATGC	1 cut(s)	101
Sse9I	AATT	5 cut(s)	6, 404, 464, 616, 669
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	2 cut(s)	237, 312
StyI	CCWWGG	2 cut(s)	440, 570
TaaI	ACNGT	2 cut(s)	43, 706
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	644
TasI	AATT	5 cut(s)	6, 404, 464, 616, 669
TatI	WGTACW	1 cut(s)	335
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	309, 479
TscAI	CASTG	4 cut(s)	17, 48, 149, 355
TseFI	GTSAC	3 cut(s)	83, 176, 245
TseI	GCWGC	6 cut(s)	101, 197, 388, 460, 575, 578
Tsp45I	GTSAC	3 cut(s)	83, 176, 245
TspDTI	ATGAA	2 cut(s)	17, 248
TspRI	CASTG	4 cut(s)	17, 48, 149, 355
XapI	RAATTY	1 cut(s)	6
XceI	RCATGY	2 cut(s)	101, 734
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.