Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010888

Physical Location & Seq

Genomic Coordinates Reverse (-)

18805003 .. 18808949

Gene Structure 3947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G197100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAAATTCAGTGTGATGTGTGCGAGAAGGCTCCGGCGACGGTGATTTGTTGCGCTGACGAGGCAGCTCTGTGCGCCAAATGTGACGTTGAAGTGCACGCAGCAAATAAACTTGCAAGCAAGCACCAGAGGCTTCTTCTAAATTGCCTCTCCAACAAGCTCCCTAGATGTGACATATGCCAAGATAAGGCAGCTTTTATATTCTGCGTTGAAGACAGAGCCCTCTTTTGTCAGGATTGTGATGAACCAATTCATTCAGCCAATAGCCTCTCTGCAAACCACCAGAGGTTCCTTGCCACTGGAATCCGAGTGGCATTGAGCTCCAGTTGTACTAAGGAAGCTGAAACAAGTAGCTTGGAGCCACCCGAGCGTAGCACACAGCAGATTTCAACAAAAATTTCAGCACCACAGGCTTCCGGCGTCTTGTCACCTTGGGGAGTCGATGACTTACTGCAATTATCAGATTTTGAATCTTCTGACAAGAAAGAGTCACTTGAGTTTGGAGAGCTTGAATGGATAGCAGATATGGGTCTTTTTGGTGAGCAGTTTCCTCAGGAGGCCATGGCAGCAGCTGAAGTTCCTCAGCTTCCAGCATCACAGCCAAGCAATTTTGCCTCACAAAGACCCCCAAAATCGAACGTCCCATACAAGAAGCCTAGGATTGAAATCGCAGATGATGATGATGAGCATTTTACCGTTCCTGATCTTGGCATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010099 GO:0010100 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

240

Amino Acids

26.16

Weight (kDa)

4.7

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06040 AT1G06040 AT2G31380
fragaria_vesca	FvH4_4g10930 FvH4_4g10930
malus_domestica	MD04G1042700.v1.1 MD09G1251100.v1.1 MD17G1243400.v1.1
prunus_persica	Prupe.1G197100_v2.0.a1 Prupe.3G155900_v2.0.a1
pyrus_communis	pycom04g03750 pycom17g24600
rosa_chinensis	RchiOBHm_Chr4g0406441
rosa_laevigata	RLG00000008771
rosa_multiflora	Rmu_ssc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_5G00351320
rosa_rugosa	Rorug04G0071300
rosa_samantha	Rh4AG138300 Rh4BG135500
rosa_wichuraiana	Rw4G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	6, 396
AcuI	CTGAAG	1 cut(s)	594
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	2 cut(s)	187, 707
AgsI	TTSAA	6 cut(s)	92, 212, 390, 470, 512, 665
AluBI	AGCT	9 cut(s)	68, 160, 194, 321, 341, 354, 508, 572, 586
AluI	AGCT	9 cut(s)	68, 160, 194, 321, 341, 354, 508, 572, 586
Alw21I	GWGCWC	2 cut(s)	99, 323
Alw44I	GTGCAC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	1 cut(s)	558
ApaLI	GTGCAC	1 cut(s)	95
ApeKI	GCWGC	5 cut(s)	65, 101, 191, 566, 569
ApoI	RAATTY	2 cut(s)	6, 396
Asp700I	GAANNNNTTC	1 cut(s)	249
AspA2I	CCTAGG	1 cut(s)	656
AspLEI	GCGC	2 cut(s)	56, 77
AsuHPI	GGTGA	3 cut(s)	55, 420, 551
AvaI	CYCGRG	1 cut(s)	365
AvrII	CCTAGG	1 cut(s)	656
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	223, 323
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	99, 323
BbvCI	CCTCAGC	1 cut(s)	582
BbvI	GCAGC	5 cut(s)	77, 113, 203, 578, 581
BfaI	CTAG	2 cut(s)	165, 657
BisI	GCNGC	5 cut(s)	66, 102, 192, 567, 570
BlnI	CCTAGG	1 cut(s)	656
BlsI	GCNGC	5 cut(s)	67, 103, 193, 568, 571
BmeT110I	CYCGRG	1 cut(s)	365
BmiI	GGNNCC	3 cut(s)	33, 290, 360
BmsI	GCATC	1 cut(s)	602
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	515
BsaBI	GATNNNNATC	1 cut(s)	665
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	431, 561, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 707
Bse1I	ACTGG	2 cut(s)	304, 324
Bse21I	CCTNAGG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	665
BseDI	CCNNGG	3 cut(s)	431, 561, 656
BseJI	GATNNNNATC	1 cut(s)	665
BseLI	CCNNNNNNNGG	2 cut(s)	187, 707
BseMII	CTCAG	2 cut(s)	566, 596
BseNI	ACTGG	2 cut(s)	304, 324
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	5 cut(s)	77, 113, 203, 578, 581
BshFI	GGCC	1 cut(s)	560
BsiHKAI	GWGCWC	2 cut(s)	99, 323
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	35, 417
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	2 cut(s)	187, 707
BsmFI	GGGAC	1 cut(s)	626
BsnI	GGCC	1 cut(s)	560
BsoBI	CYCGRG	1 cut(s)	365
Bsp1286I	GDGCHC	3 cut(s)	99, 223, 323
Bsp143I	GATC	1 cut(s)	703
Bsp19I	CCATGG	1 cut(s)	561
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	2 cut(s)	565, 595
BspLI	GGNNCC	3 cut(s)	33, 290, 360
BsrI	ACTGG	2 cut(s)	304, 324
BssECI	CCNNGG	3 cut(s)	431, 561, 656
BssMI	GATC	1 cut(s)	703
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	3 cut(s)	431, 561, 656
Bst4CI	ACNGT	2 cut(s)	43, 697
BstACI	GRCGYC	1 cut(s)	420
BstC8I	GCNNGC	3 cut(s)	99, 118, 122
BstDEI	CTNAG	3 cut(s)	333, 552, 582
BstDSI	CCRYGG	1 cut(s)	561
BstHHI	GCGC	2 cut(s)	56, 77
BstKTI	GATC	1 cut(s)	706
BstMBI	GATC	1 cut(s)	703
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 74, 130, 367, 410, 566
BstSLI	GKGCMC	1 cut(s)	99
BstV1I	GCAGC	5 cut(s)	77, 113, 203, 578, 581
BstV2I	GAAGAC	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	1 cut(s)	560
BtgI	CCRYGG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	17, 297
Cac8I	GCNNGC	3 cut(s)	99, 118, 122
CaiI	CAGNNNCTG	1 cut(s)	572
CfoI	GCGC	2 cut(s)	56, 77
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	1 cut(s)	562
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	3 cut(s)	333, 552, 582
DpnI	GATC	1 cut(s)	705
DpnII	GATC	1 cut(s)	703
Ecl136II	GAGCTC	1 cut(s)	321
Eco130I	CCWWGG	3 cut(s)	431, 561, 656
Eco24I	GRGCYC	2 cut(s)	223, 323
Eco53kI	GAGCTC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	594
Eco81I	CCTNAGG	1 cut(s)	552
Eco88I	CYCGRG	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	321
EcoT14I	CCWWGG	3 cut(s)	431, 561, 656
EcoT38I	GRGCYC	2 cut(s)	223, 323
ErhI	CCWWGG	3 cut(s)	431, 561, 656
FaeI	CATG	1 cut(s)	565
FaiI	YATR	7 cut(s)	176, 178, 200, 527, 563, 646, 713
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	1 cut(s)	561
FauNDI	CATATG	1 cut(s)	176
Fnu4HI	GCNGC	5 cut(s)	66, 102, 192, 567, 570
FriOI	GRGCYC	2 cut(s)	223, 323
Fsp4HI	GCNGC	5 cut(s)	66, 102, 192, 567, 570
FspBI	CTAG	2 cut(s)	165, 657
GlaI	GCGC	2 cut(s)	55, 76
GluI	GCNGC	5 cut(s)	66, 102, 192, 567, 570
GsuI	CTGGAG	1 cut(s)	307
HaeIII	GGCC	1 cut(s)	560
HapII	CCGG	2 cut(s)	35, 417
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	2 cut(s)	56, 77
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	1 cut(s)	565
Hin6I	GCGC	2 cut(s)	54, 75
HinP1I	GCGC	2 cut(s)	54, 75
HinfI	GANTC	4 cut(s)	303, 438, 470, 488
HpaII	CCGG	2 cut(s)	35, 417
HphI	GGTGA	3 cut(s)	55, 420, 551
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	308, 463, 478
Hpy188III	TCNNGA	3 cut(s)	233, 554, 701
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	2 cut(s)	43, 697
HpyCH4IV	ACGT	2 cut(s)	87, 639
HpyCH4V	TGCA	4 cut(s)	97, 116, 275, 454
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 74, 130, 367, 410, 566
HpyF3I	CTNAG	3 cut(s)	333, 552, 582
HpySE526I	ACGT	2 cut(s)	87, 639
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	1 cut(s)	565
HspAI	GCGC	2 cut(s)	54, 75
Kzo9I	GATC	1 cut(s)	703
LmnI	GCTCC	4 cut(s)	37, 165, 326, 358
Lsp1109I	GCAGC	5 cut(s)	77, 113, 203, 578, 581
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	2 cut(s)	165, 657
MaeII	ACGT	2 cut(s)	87, 639
MaeIII	GTNAC	4 cut(s)	83, 170, 426, 489
MalI	GATC	1 cut(s)	705
MboI	GATC	1 cut(s)	703
MboII	GAAGA	3 cut(s)	128, 224, 465
MhlI	GDGCHC	3 cut(s)	99, 223, 323
MluCI	AATT	6 cut(s)	6, 142, 249, 396, 455, 607
MlyI	GAGTC	2 cut(s)	447, 497
MmeI	TCCRAC	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	2 cut(s)	35, 417
MwoI	GCNNNNNNNGC	6 cut(s)	62, 74, 130, 367, 410, 566
NcoI	CCATGG	1 cut(s)	561
NdeI	CATATG	1 cut(s)	176
NdeII	GATC	1 cut(s)	703
NlaIII	CATG	1 cut(s)	565
NlaIV	GGNNCC	3 cut(s)	33, 290, 360
NmuCI	GTSAC	4 cut(s)	83, 170, 426, 489
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	303, 470
PkrI	GCNGC	5 cut(s)	67, 103, 193, 568, 571
PleI	GAGTC	2 cut(s)	446, 496
PpsI	GAGTC	2 cut(s)	446, 496
Psp124BI	GAGCTC	1 cut(s)	323
PspN4I	GGNNCC	3 cut(s)	33, 290, 360
PsrI	GAACNNNNNNTAC	2 cut(s)	629, 661
PstNI	CAGNNNCTG	1 cut(s)	572
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
SacI	GAGCTC	1 cut(s)	323
SatI	GCNGC	5 cut(s)	66, 102, 192, 567, 570
Sau3AI	GATC	1 cut(s)	703
SchI	GAGTC	2 cut(s)	447, 497
SduI	GDGCHC	3 cut(s)	99, 223, 323
SfaNI	GCATC	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	6 cut(s)	6, 142, 249, 396, 455, 607
SspMI	CTAG	2 cut(s)	165, 657
SstI	GAGCTC	1 cut(s)	323
StyI	CCWWGG	3 cut(s)	431, 561, 656
TaaI	ACNGT	2 cut(s)	43, 697
TaiI	ACGT	2 cut(s)	90, 642
TaqI	TCGA	2 cut(s)	441, 635
TasI	AATT	6 cut(s)	6, 142, 249, 396, 455, 607
TatI	WGTACW	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	303, 470
TscAI	CASTG	2 cut(s)	17, 304
TseFI	GTSAC	4 cut(s)	83, 170, 426, 489
TseI	GCWGC	5 cut(s)	65, 101, 191, 566, 569
Tsp45I	GTSAC	4 cut(s)	83, 170, 426, 489
TspDTI	ATGAA	3 cut(s)	17, 242, 258
TspRI	CASTG	2 cut(s)	17, 304
VneI	GTGCAC	1 cut(s)	95
XapI	RAATTY	2 cut(s)	6, 396
XmaJI	CCTAGG	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	2 cut(s)	165, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.