Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010888

Physical Location & Seq

Genomic Coordinates Forward (+)

35289468 .. 35292170

Gene Structure 2703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG138300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAGATTCAGTGCGATGTGTGTGAGAAAGCTCCGGCGACGGTGATTTGTTGCGCTGACGAGGCGGCACTGTGTGCCAAATGTGATGTTGAAGTGCACGCAGCAAATAAACTCGCAAGCAAGCACCAGAGGCTTCTTCTTGAATCTCTATCCAACAAGCTCCCTAGATGTGATATATGCCAAGACAAGGCAGCTTTTATATTCTGTGTCGAAGACAGAGCCCTCTTTTGTCAGGATTGTGATGAATCAATTCATTCAGCCAATAGCCTCTCTGCCAACCACCAGAGGTTCCTCGCCACTGGAATCCGAGTTGCATTGAGCTCTCCTTGTACTAAGGACGCTGAAACAAGTAGCATAGAGCCACCCAATCATAGTCCACAGCTGGTTTCAACAAAAGTGCCAACGCCACATGCTTCTCTCATCTCATCTCCTTGGGGTGTTGATGACTTGCTGCAATTATCAGATTTTGAATCTTCTGACAAGAAAGAGTCGCTTGAGTTTGGAGAGCTTGAATGGATAGCAGATATGGGTCTTTTTGGTGAGCAGTTTCCTCAGGAGGCTCTGGCAGCAGCTGAAGTACCTCAGCTTCCAGTATCACAATCGAGCAACTATACGTCATATAGACCCCCGAAATCAAACAGTCCATTCAAGAAGCCTAGGATTGAAATCCCAGATGATGATGATGAGCATTTCACTGTTCCTGATCTTGGCATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010099 GO:0010100 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

239

Amino Acids

26.24

Weight (kDa)

4.74

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	53 - 95	5.5e-08	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06040 AT1G06040 AT2G31380
fragaria_vesca	FvH4_4g10930 FvH4_4g10930
malus_domestica	MD04G1042700.v1.1 MD09G1251100.v1.1 MD17G1243400.v1.1
prunus_persica	Prupe.1G197100_v2.0.a1 Prupe.3G155900_v2.0.a1
pyrus_communis	pycom04g03750 pycom17g24600
rosa_chinensis	RchiOBHm_Chr4g0406441
rosa_laevigata	RLG00000008771
rosa_multiflora	Rmu_ssc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_5G00351320
rosa_rugosa	Rorug04G0071300
rosa_samantha	Rh4AG138300 Rh4BG135500
rosa_wichuraiana	Rw4G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	594
AdeI	CACNNNGTG	1 cut(s)	74
AfaI	GTAC	2 cut(s)	331, 579
AfiI	CCNNNNNNNGG	2 cut(s)	187, 707
AgsI	TTSAA	7 cut(s)	92, 143, 390, 470, 512, 649, 665
AluBI	AGCT	8 cut(s)	32, 160, 194, 321, 382, 508, 572, 586
AluI	AGCT	8 cut(s)	32, 160, 194, 321, 382, 508, 572, 586
Alw21I	GWGCWC	2 cut(s)	99, 323
Alw44I	GTGCAC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	572
ApaLI	GTGCAC	1 cut(s)	95
ApeKI	GCWGC	5 cut(s)	101, 191, 451, 566, 569
Asp700I	GAANNNNTTC	1 cut(s)	249
AspA2I	CCTAGG	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	55, 551
AvrII	CCTAGG	1 cut(s)	656
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	223, 323
BarI	GAAGNNNNNNTAC	2 cut(s)	570, 602
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	99, 323
BbvCI	CCTCAGC	1 cut(s)	582
BbvI	GCAGC	5 cut(s)	113, 203, 438, 578, 581
BfaI	CTAG	2 cut(s)	165, 657
BisI	GCNGC	6 cut(s)	66, 102, 192, 452, 567, 570
BlnI	CCTAGG	1 cut(s)	656
BlsI	GCNGC	6 cut(s)	67, 103, 193, 453, 568, 571
BmiI	GGNNCC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	515
BsaBI	GATNNNNATC	1 cut(s)	665
BsaJI	CCNNGG	2 cut(s)	431, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 707
Bse1I	ACTGG	2 cut(s)	304, 590
Bse21I	CCTNAGG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	665
BseDI	CCNNGG	2 cut(s)	431, 656
BseJI	GATNNNNATC	1 cut(s)	665
BseLI	CCNNNNNNNGG	2 cut(s)	187, 707
BseMII	CTCAG	2 cut(s)	566, 596
BseNI	ACTGG	2 cut(s)	304, 590
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	5 cut(s)	113, 203, 438, 578, 581
BsiHKAI	GWGCWC	2 cut(s)	99, 323
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	187, 707
Bsp1286I	GDGCHC	3 cut(s)	99, 223, 323
Bsp143I	GATC	1 cut(s)	703
BspACI	CCGC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	565, 595
BspLI	GGNNCC	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	304, 590
BssECI	CCNNGG	2 cut(s)	431, 656
BssMI	GATC	1 cut(s)	703
BssT1I	CCWWGG	2 cut(s)	431, 656
Bst4CI	ACNGT	4 cut(s)	43, 72, 641, 697
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	99, 118, 122
BstDEI	CTNAG	3 cut(s)	333, 552, 582
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	706
BstMBI	GATC	1 cut(s)	703
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 74, 130, 566
BstNSI	RCATGY	1 cut(s)	413
BstSLI	GKGCMC	1 cut(s)	99
BstV1I	GCAGC	5 cut(s)	113, 203, 438, 578, 581
BstV2I	GAAGAC	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	552
BtgZI	GCGATG	1 cut(s)	30
BtsIMutI	CAGTG	4 cut(s)	17, 68, 297, 693
Cac8I	GCNNGC	3 cut(s)	99, 118, 122
CaiI	CAGNNNCTG	1 cut(s)	572
CfoI	GCGC	1 cut(s)	56
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	330, 578
CviAII	CATG	1 cut(s)	410
CviQI	GTAC	2 cut(s)	330, 578
DdeI	CTNAG	3 cut(s)	333, 552, 582
DpnI	GATC	1 cut(s)	705
DpnII	GATC	1 cut(s)	703
DraIII	CACNNNGTG	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	431, 656
Eco24I	GRGCYC	2 cut(s)	223, 323
Eco53kI	GAGCTC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	594
Eco81I	CCTNAGG	1 cut(s)	552
EcoICRI	GAGCTC	1 cut(s)	321
EcoT14I	CCWWGG	2 cut(s)	431, 656
EcoT38I	GRGCYC	2 cut(s)	223, 323
ErhI	CCWWGG	2 cut(s)	431, 656
FaeI	CATG	1 cut(s)	413
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FatI	CATG	1 cut(s)	409
Fnu4HI	GCNGC	6 cut(s)	66, 102, 192, 452, 567, 570
FriOI	GRGCYC	2 cut(s)	223, 323
Fsp4HI	GCNGC	6 cut(s)	66, 102, 192, 452, 567, 570
FspBI	CTAG	2 cut(s)	165, 657
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	6 cut(s)	66, 102, 192, 452, 567, 570
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	413
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	6 cut(s)	7, 143, 245, 303, 470, 488
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	2 cut(s)	55, 551
Hpy166II	GTNNAC	2 cut(s)	97, 377
Hpy188I	TCNGA	3 cut(s)	308, 463, 478
Hpy188III	TCNNGA	5 cut(s)	140, 233, 554, 649, 701
Hpy8I	GTNNAC	2 cut(s)	97, 377
Hpy99I	CGWCG	1 cut(s)	43
HpyCH4III	ACNGT	4 cut(s)	43, 72, 641, 697
HpyCH4IV	ACGT	1 cut(s)	614
HpyCH4V	TGCA	3 cut(s)	97, 314, 454
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 74, 130, 566
HpyF3I	CTNAG	3 cut(s)	333, 552, 582
HpySE526I	ACGT	1 cut(s)	614
Hsp92II	CATG	1 cut(s)	413
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	703
LmnI	GCTCC	2 cut(s)	37, 165
Lsp1109I	GCAGC	5 cut(s)	113, 203, 438, 578, 581
MaeI	CTAG	2 cut(s)	165, 657
MaeII	ACGT	1 cut(s)	614
MalI	GATC	1 cut(s)	705
MboI	GATC	1 cut(s)	703
MboII	GAAGA	4 cut(s)	16, 128, 224, 465
MhlI	GDGCHC	3 cut(s)	99, 223, 323
MluCI	AATT	2 cut(s)	249, 455
MlyI	GAGTC	1 cut(s)	497
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	9 cut(s)	55, 123, 233, 278, 279, 302, 550, 561, 591
MroXI	GAANNNNTTC	1 cut(s)	249
MspA1I	CMGCKG	2 cut(s)	382, 572
MspI	CCGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	4 cut(s)	62, 74, 130, 566
NdeII	GATC	1 cut(s)	703
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	413
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	5 cut(s)	7, 143, 245, 303, 470
PkrI	GCNGC	6 cut(s)	67, 103, 193, 453, 568, 571
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Psp124BI	GAGCTC	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	572
PvuII	CAGCTG	2 cut(s)	382, 572
RsaI	GTAC	2 cut(s)	331, 579
RsaNI	GTAC	2 cut(s)	330, 578
SacI	GAGCTC	1 cut(s)	323
SatI	GCNGC	6 cut(s)	66, 102, 192, 452, 567, 570
Sau3AI	GATC	1 cut(s)	703
SchI	GAGTC	1 cut(s)	497
SduI	GDGCHC	3 cut(s)	99, 223, 323
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	2 cut(s)	249, 455
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	2 cut(s)	165, 657
SstI	GAGCTC	1 cut(s)	323
StyI	CCWWGG	2 cut(s)	431, 656
TaaI	ACNGT	4 cut(s)	43, 72, 641, 697
TaiI	ACGT	1 cut(s)	617
TaqI	TCGA	2 cut(s)	210, 602
TasI	AATT	2 cut(s)	249, 455
TatI	WGTACW	1 cut(s)	329
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	5 cut(s)	7, 143, 245, 303, 470
TscAI	CASTG	4 cut(s)	17, 75, 304, 700
TseI	GCWGC	5 cut(s)	101, 191, 451, 566, 569
TspDTI	ATGAA	3 cut(s)	17, 242, 258
TspRI	CASTG	4 cut(s)	17, 75, 304, 700
VneI	GTGCAC	1 cut(s)	95
XceI	RCATGY	1 cut(s)	413
XmaJI	CCTAGG	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	2 cut(s)	165, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.