Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010888

Physical Location & Seq

Genomic Coordinates Forward (+)

29213017 .. 29215122

Gene Structure 2106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1243400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAAAATTCAGTGTGATGTGTGTGAGAAGGCTCAGGCGACGGTGATTTGCTGCGCCGATGAGGCGGCGCTGTGCGCCAAATGTGACGTGGAAGTACATGCAGCGAATAAGCTTGCAAGCAAGCACCAGAGGCTTCTCCTCGAGTGTCTCTCAAAGTCAAACAAACTCCCTAGATGTGACATATGCCAAGACAAGGCAGCTTTTATATTCTGCGTCGAAGACAGAGCCCTCATTTGTCAGGATTGCGACGAATCGATTCATTCAGCGAATAGCCGCGCTGCAAACCACCAGAGGTTCCTAGCCACTGGAATCCGAGTGGCTTTGAACTCCGGTTGTTCTAAGGACACTGAACCGAATAGCTTGGAGCCACCCAGTAGTCACAGCTCACACACGATCGTTTCAACAAAAGTTCCAACACCACAGGCTTCTGGTTTCTCGTCCCCTTGGGGTGTTGATGACTTGCTGCAATTAACCGATTTTGAATCTTCCGACAAGAAAGAGTCTTTTGAGTTTGGTGAGCTTGAATGGATAGCAGATATGGGTATTTTCGGCGTAGAGCAATTTCCTCAGAAAGCGTTGGCAGCAGCTGAAGTTCCTCAGCTTCCACCGTCGCAGGCAACCAATTTTACCTCGTATAGACCTGCCAAATCGAACAGTCCATACAAGAAGCCTCGAATCGAAATGCTGGAGGACGATGATGATCATTTTACTGTCCCTGATCTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010099 GO:0010100 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

243

Amino Acids

26.54

Weight (kDa)

5.0

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	55 - 97	9.5e-09	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06040 AT1G06040 AT2G31380
fragaria_vesca	FvH4_4g10930 FvH4_4g10930
malus_domestica	MD04G1042700.v1.1 MD09G1251100.v1.1 MD17G1243400.v1.1
prunus_persica	Prupe.1G197100_v2.0.a1 Prupe.3G155900_v2.0.a1
pyrus_communis	pycom04g03750 pycom17g24600
rosa_chinensis	RchiOBHm_Chr4g0406441
rosa_laevigata	RLG00000008771
rosa_multiflora	Rmu_ssc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_5G00351320
rosa_rugosa	Rorug04G0071300
rosa_samantha	Rh4AG138300 Rh4BG135500
rosa_wichuraiana	Rw4G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	649
AccII	CGCG	1 cut(s)	276
AciI	CCGC	2 cut(s)	65, 274
AcsI	RAATTY	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	193, 722
AgsI	TTSAA	4 cut(s)	325, 402, 482, 524
AjiI	CACGTC	1 cut(s)	88
AluBI	AGCT	7 cut(s)	112, 200, 360, 384, 520, 587, 601
AluI	AGCT	7 cut(s)	112, 200, 360, 384, 520, 587, 601
Alw26I	GTCTC	1 cut(s)	152
AlwNI	CAGNNNCTG	1 cut(s)	587
Ama87I	CYCGRG	1 cut(s)	140
ApeKI	GCWGC	7 cut(s)	51, 101, 197, 278, 463, 581, 584
ApoI	RAATTY	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	4 cut(s)	56, 70, 77, 278
AsuHPI	GGTGA	2 cut(s)	55, 527
AvaI	CYCGRG	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	7 cut(s)	38, 113, 209, 265, 450, 593, 596
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	2 cut(s)	171, 299
BfoI	RGCGCY	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	649
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	9 cut(s)	52, 66, 102, 198, 274, 279, 464, 582, 585
BlsI	GCNGC	9 cut(s)	53, 67, 103, 199, 275, 280, 465, 583, 586
BmeT110I	CYCGRG	1 cut(s)	140
BmgBI	CACGTC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	296, 366
BmrI	ACTGGG	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
BpmI	CTGGAG	1 cut(s)	707
Bpu10I	CCTNAGC	2 cut(s)	33, 597
Bsa29I	ATCGAT	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	699
BsaJI	CCNNGG	1 cut(s)	443
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 722
Bse1I	ACTGG	2 cut(s)	310, 372
Bse8I	GATNNNNATC	1 cut(s)	699
BseCI	ATCGAT	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	443
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	2 cut(s)	193, 722
BseMII	CTCAG	3 cut(s)	47, 581, 611
BseNI	ACTGG	2 cut(s)	310, 372
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	7 cut(s)	38, 113, 209, 265, 450, 593, 596
Bsh1236I	CGCG	1 cut(s)	276
Bsh1285I	CGRYCG	1 cut(s)	396
BshVI	ATCGAT	1 cut(s)	254
BsiEI	CGRYCG	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	2 cut(s)	424, 698
BslI	CCNNNNNNNGG	2 cut(s)	193, 722
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	2 cut(s)	424, 698
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	393, 700, 718
BspACI	CCGC	2 cut(s)	65, 274
BspCNI	CTCAG	3 cut(s)	46, 580, 610
BspDI	ATCGAT	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	296, 366
BspMI	ACCTGC	1 cut(s)	649
BsrI	ACTGG	2 cut(s)	310, 372
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	3 cut(s)	393, 700, 718
BssT1I	CCWWGG	1 cut(s)	443
Bst4CI	ACNGT	4 cut(s)	43, 609, 656, 712
BstC8I	GCNNGC	4 cut(s)	114, 118, 122, 615
BstDEI	CTNAG	4 cut(s)	33, 339, 567, 597
BstFNI	CGCG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	4 cut(s)	56, 70, 77, 278
BstKTI	GATC	3 cut(s)	396, 703, 721
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	393, 700, 718
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 74, 130, 581
BstNSI	RCATGY	1 cut(s)	101
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	7 cut(s)	38, 113, 209, 265, 450, 593, 596
BstV2I	GAAGAC	1 cut(s)	225
Bsu15I	ATCGAT	1 cut(s)	254
BsuTUI	ATCGAT	1 cut(s)	254
BtrI	CACGTC	1 cut(s)	88
BtsIMutI	CAGTG	3 cut(s)	17, 303, 345
BveI	ACCTGC	1 cut(s)	649
Cac8I	GCNNGC	4 cut(s)	114, 118, 122, 615
CaiI	CAGNNNCTG	1 cut(s)	587
CfoI	GCGC	4 cut(s)	56, 70, 77, 278
ClaI	ATCGAT	1 cut(s)	254
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	1 cut(s)	98
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	4 cut(s)	33, 339, 567, 597
DpnI	GATC	3 cut(s)	395, 702, 720
DpnII	GATC	3 cut(s)	393, 700, 718
Eco130I	CCWWGG	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	1 cut(s)	101
FaiI	YATR	7 cut(s)	99, 182, 184, 206, 539, 636, 661
FaqI	GGGAC	2 cut(s)	424, 698
FatI	CATG	1 cut(s)	97
FauNDI	CATATG	1 cut(s)	182
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	9 cut(s)	52, 66, 102, 198, 274, 279, 464, 582, 585
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	9 cut(s)	52, 66, 102, 198, 274, 279, 464, 582, 585
FspBI	CTAG	2 cut(s)	171, 299
GlaI	GCGC	4 cut(s)	55, 69, 76, 277
GluI	GCNGC	9 cut(s)	52, 66, 102, 198, 274, 279, 464, 582, 585
GsuI	CTGGAG	1 cut(s)	707
HaeII	RGCGCY	1 cut(s)	71
HapII	CCGG	1 cut(s)	330
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	4 cut(s)	56, 70, 77, 278
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	4 cut(s)	54, 68, 75, 276
HinP1I	GCGC	4 cut(s)	54, 68, 75, 276
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	6 cut(s)	251, 256, 309, 482, 500, 675
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	2 cut(s)	55, 527
Hpy188I	TCNGA	3 cut(s)	314, 490, 570
Hpy188III	TCNNGA	1 cut(s)	239
Hpy99I	CGWCG	4 cut(s)	43, 218, 251, 613
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	4 cut(s)	43, 609, 656, 712
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	4 cut(s)	101, 116, 281, 466
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 74, 130, 581
HpyF3I	CTNAG	4 cut(s)	33, 339, 567, 597
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	4 cut(s)	54, 68, 75, 276
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	3 cut(s)	393, 700, 718
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	7 cut(s)	38, 113, 209, 265, 450, 593, 596
MaeI	CTAG	2 cut(s)	171, 299
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	83, 176, 377
MalI	GATC	3 cut(s)	395, 702, 720
MboI	GATC	3 cut(s)	393, 700, 718
MboII	GAAGA	2 cut(s)	230, 477
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	4 cut(s)	6, 467, 560, 622
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	2 cut(s)	437, 513
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	4 cut(s)	62, 74, 130, 581
NdeI	CATATG	1 cut(s)	182
NdeII	GATC	3 cut(s)	393, 700, 718
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	2 cut(s)	296, 366
NmuCI	GTSAC	3 cut(s)	83, 176, 377
NspI	RCATGY	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	5 cut(s)	251, 256, 309, 482, 675
PkrI	GCNGC	9 cut(s)	53, 67, 103, 199, 275, 280, 465, 583, 586
Ple19I	CGATCG	1 cut(s)	396
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	296, 366
PspXI	VCTCGAGB	1 cut(s)	140
PsrI	GAACNNNNNNTAC	2 cut(s)	644, 676
PstNI	CAGNNNCTG	1 cut(s)	587
PvuI	CGATCG	1 cut(s)	396
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	9 cut(s)	52, 66, 102, 198, 274, 279, 464, 582, 585
Sau3AI	GATC	3 cut(s)	393, 700, 718
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	229
Sfr274I	CTCGAG	1 cut(s)	140
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	4 cut(s)	6, 467, 560, 622
SsiI	CCGC	2 cut(s)	65, 274
SspMI	CTAG	2 cut(s)	171, 299
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	4 cut(s)	43, 609, 656, 712
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	6 cut(s)	141, 216, 254, 650, 673, 678
TasI	AATT	4 cut(s)	6, 467, 560, 622
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	2 cut(s)	68, 276
TfiI	GAWTC	5 cut(s)	251, 256, 309, 482, 675
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	3 cut(s)	17, 310, 352
TseFI	GTSAC	3 cut(s)	83, 176, 377
TseI	GCWGC	7 cut(s)	51, 101, 197, 278, 463, 581, 584
Tsp45I	GTSAC	3 cut(s)	83, 176, 377
TspDTI	ATGAA	2 cut(s)	17, 248
TspRI	CASTG	3 cut(s)	17, 310, 352
XapI	RAATTY	1 cut(s)	6
XceI	RCATGY	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	2 cut(s)	171, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.