Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010888

Physical Location & Seq

Genomic Coordinates Reverse (-)

10989450 .. 10991938

Gene Structure 2489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0071300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCAGCTCATTTGATTGAGAATGACGCACTGGCAACAGCAGCAAAATATGCACCAGTCACTTATGAGAGGAGAGTCAGGGGGGACTTGGAAACCACACTTCCAAAGCCATATCTTCCCAGAGCCCTGACTGCTCCAGACACAAACCATCCCATGGGAACACCTGGACATCACCATCGCAACCTGAGTGTTCTTCAGCAGCATGTGGCATTTTTTGACCAGGACGAAAATGGAATCGTCTACCCTTGGGAAACTTTTGTTGGATTTCGAGCTATCGGTTTCAACTCAATTGTATCTCTCATCGCGGCAGTTGTCATCAATGCAGCACTGAGTTATGCTACTCTTCCTGGGTGGTTTCCTTCTCCATTCTTGCCCATATACATTCTAAACATTCACAGGGCAAAGCATGGTAGTGATACTGGAACATACGACACAGAAGGAAGGTTTTCACCAGCAAACATTGAGCTCATGTTTAGCAAGTATGCTCGTACAGTTCCTGACAAGTTCACTCTAGCAGAGCTTTGGGACATGACTGAGGGAAACAGAGTTTCATACGACTTCTTTGGATGGATTGGAAGTAAGCTGGAATGGGGACTTCTGTATGTTCTTGCAAGGGATGAGGAGGGTTTTCTATCTAAAGAAGCTGTGAGACGCTGCTTTGATGGAAGCTTATTCGAGTATTGTGCCAAGATGAATGCAAGTGCTGAAGCTAAGATGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010099 GO:0010100 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

240

Amino Acids

26.92

Weight (kDa)

5.9

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	61 - 228	1.7e-75	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06040 AT1G06040 AT2G31380
fragaria_vesca	FvH4_4g10930 FvH4_4g10930
malus_domestica	MD04G1042700.v1.1 MD09G1251100.v1.1 MD17G1243400.v1.1
prunus_persica	Prupe.1G197100_v2.0.a1 Prupe.3G155900_v2.0.a1
pyrus_communis	pycom04g03750 pycom17g24600
rosa_chinensis	RchiOBHm_Chr4g0406441
rosa_laevigata	RLG00000008771
rosa_multiflora	Rmu_ssc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_5G00351320
rosa_rugosa	Rorug04G0071300
rosa_samantha	Rh4AG138300 Rh4BG135500
rosa_wichuraiana	Rw4G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	1 cut(s)	305
AciI	CCGC	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	490
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	283
AjnI	CCWGG	3 cut(s)	163, 219, 346
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	8 cut(s)	8, 272, 466, 520, 583, 644, 669, 710
AluI	AGCT	8 cut(s)	8, 272, 466, 520, 583, 644, 669, 710
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	643
AlwNI	CAGNNNCTG	1 cut(s)	497
ApeKI	GCWGC	5 cut(s)	5, 41, 199, 323, 654
Asp700I	GAANNNNTTC	1 cut(s)	445
AsuHPI	GGTGA	2 cut(s)	164, 441
BanII	GRGCYC	2 cut(s)	127, 468
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	5 cut(s)	17, 53, 211, 335, 641
BccI	CCATC	5 cut(s)	156, 183, 561, 656, 709
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	3 cut(s)	165, 221, 348
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	1 cut(s)	512
BisI	GCNGC	6 cut(s)	6, 42, 200, 306, 324, 655
BlsI	GCNGC	6 cut(s)	7, 43, 201, 307, 325, 656
Bme1390I	CCNGG	3 cut(s)	165, 221, 348
BmrFI	CCNGG	3 cut(s)	165, 221, 348
BpmI	CTGGAG	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	153, 245, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	3 cut(s)	36, 56, 424
BseBI	CCWGG	3 cut(s)	165, 221, 348
BseDI	CCNNGG	3 cut(s)	153, 245, 347
BseGI	GGATG	3 cut(s)	148, 572, 622
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	3 cut(s)	176, 320, 525
BseNI	ACTGG	3 cut(s)	36, 56, 424
BseRI	GAGGAG	2 cut(s)	85, 635
BseXI	GCAGC	5 cut(s)	17, 53, 211, 335, 641
Bsh1236I	CGCG	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	468
BslFI	GGGAC	3 cut(s)	98, 539, 606
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	643
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	3 cut(s)	98, 539, 606
BsmI	GAATGC	1 cut(s)	700
Bsp1286I	GDGCHC	2 cut(s)	127, 468
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	1 cut(s)	305
BspCNI	CTCAG	3 cut(s)	177, 321, 526
BspFNI	CGCG	1 cut(s)	305
BsrI	ACTGG	3 cut(s)	36, 56, 424
BssECI	CCNNGG	3 cut(s)	153, 245, 347
BssT1I	CCWWGG	2 cut(s)	153, 245
Bst2UI	CCWGG	3 cut(s)	165, 221, 348
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstDEI	CTNAG	4 cut(s)	185, 329, 534, 711
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	148, 572, 622
BstFNI	CGCG	1 cut(s)	305
BstMAI	GTCTC	1 cut(s)	643
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 50, 131
BstNI	CCWGG	3 cut(s)	165, 221, 348
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	3 cut(s)	163, 219, 346
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	5 cut(s)	17, 53, 211, 335, 641
BtgI	CCRYGG	1 cut(s)	153
BtgZI	GCGATG	2 cut(s)	161, 286
BtsCI	GGATG	3 cut(s)	148, 572, 622
BtsIMutI	CAGTG	2 cut(s)	29, 326
CaiI	CAGNNNCTG	1 cut(s)	497
CseI	GACGC	2 cut(s)	35, 660
Csp6I	GTAC	1 cut(s)	489
CviAII	CATG	5 cut(s)	154, 203, 407, 469, 529
CviQI	GTAC	1 cut(s)	489
DdeI	CTNAG	4 cut(s)	185, 329, 534, 711
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	466
Eco130I	CCWWGG	2 cut(s)	153, 245
Eco24I	GRGCYC	2 cut(s)	127, 468
Eco53kI	GAGCTC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	466
EcoRII	CCWGG	3 cut(s)	163, 219, 346
EcoT14I	CCWWGG	2 cut(s)	153, 245
EcoT38I	GRGCYC	2 cut(s)	127, 468
ErhI	CCWWGG	2 cut(s)	153, 245
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	5 cut(s)	157, 206, 410, 472, 532
FaqI	GGGAC	3 cut(s)	98, 539, 606
FatI	CATG	5 cut(s)	153, 202, 406, 468, 528
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	6 cut(s)	6, 42, 200, 306, 324, 655
FokI	GGATG	3 cut(s)	135, 579, 629
FriOI	GRGCYC	2 cut(s)	127, 468
Fsp4HI	GCNGC	6 cut(s)	6, 42, 200, 306, 324, 655
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	6 cut(s)	6, 42, 200, 306, 324, 655
GsuI	CTGGAG	1 cut(s)	120
HgaI	GACGC	2 cut(s)	35, 660
Hin1II	CATG	5 cut(s)	157, 206, 410, 472, 532
HindIII	AAGCTT	1 cut(s)	667
HinfI	GANTC	2 cut(s)	75, 234
HphI	GGTGA	2 cut(s)	164, 441
Hpy166II	GTNNAC	2 cut(s)	241, 507
Hpy188III	TCNNGA	2 cut(s)	137, 497
Hpy8I	GTNNAC	2 cut(s)	241, 507
HpyAV	CCTTC	3 cut(s)	369, 431, 435
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4V	TGCA	4 cut(s)	53, 323, 611, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 50, 131
HpyF3I	CTNAG	4 cut(s)	185, 329, 534, 711
Hsp92II	CATG	5 cut(s)	157, 206, 410, 472, 532
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	5 cut(s)	17, 53, 211, 335, 641
MaeI	CTAG	1 cut(s)	512
MaeIII	GTNAC	1 cut(s)	58
MboII	GAAGA	3 cut(s)	107, 185, 335
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	2 cut(s)	127, 468
MluCI	AATT	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	4 cut(s)	63, 529, 613, 616
MroXI	GAANNNNTTC	1 cut(s)	445
MslI	CAYNNNNRTG	1 cut(s)	411
MspR9I	CCNGG	3 cut(s)	165, 221, 348
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	3 cut(s)	165, 221, 348
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	3 cut(s)	41, 50, 131
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	5 cut(s)	157, 206, 410, 472, 532
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	206
PctI	GAATGC	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	6 cut(s)	7, 43, 201, 307, 325, 656
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	468
Psp6I	CCWGG	3 cut(s)	163, 219, 346
PspGI	CCWGG	3 cut(s)	163, 219, 346
PstNI	CAGNNNCTG	1 cut(s)	497
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
RseI	CAYNNNNRTG	1 cut(s)	411
SacI	GAGCTC	1 cut(s)	468
SatI	GCNGC	6 cut(s)	6, 42, 200, 306, 324, 655
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	3 cut(s)	165, 221, 348
SduI	GDGCHC	2 cut(s)	127, 468
SmiMI	CAYNNNNRTG	1 cut(s)	411
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	1 cut(s)	512
SstI	GAGCTC	1 cut(s)	468
StyD4I	CCNGG	3 cut(s)	163, 219, 346
StyI	CCWWGG	2 cut(s)	153, 245
TaaI	ACNGT	1 cut(s)	493
TaqI	TCGA	2 cut(s)	268, 675
TasI	AATT	1 cut(s)	288
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	234
TscAI	CASTG	2 cut(s)	36, 333
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	5 cut(s)	5, 41, 199, 323, 654
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	540, 707
TspRI	CASTG	2 cut(s)	36, 333
Van91I	CCANNNNNTGG	1 cut(s)	154
XceI	RCATGY	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	445
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.