Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010888

Physical Location & Seq

Genomic Coordinates Forward (+)

13381767 .. 13383470

Gene Structure 1704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAGATACAATGTGATGTGTGTGAGAAAGCTCCGGCCACGCTTATATGTTGTGCTGATGAAGCTGCTCTCTGCGCTAAATGTGACGTTGAGGTTCATGCTGCTAATAAACTCGCTAGCAAACACCAACGCCTTTTTCTTGACTCTCTCTCAACTAAATTCCCTCCCTGCGACATCTGCCTTGAGAAGGCAGCTTTCATATTCTGTGTAGAGGATAGGGCTCTGCTCTGCAGAGATTGCGATGAGGCGACCCATGCGCCAAATACTCGCTCTGCTAATCACCAGAGGTTCTTAGCCACTGGAATCCGAGTTGCTCTTAGTTCCACTAGTTGCAATCAAGAAGTGGAAAAGAATCACTTTGACCCATCTAATCAGCAGAGTCTCTCTAAACCGCCAACTCAGCAACCCGCTGCTCCATCTCCTTTGTGGGCTACCGATGAATTCTTCAGCTACTCTGATCTTGACTGCAGTAATAAGGAGAAAGAGCAACTCGATCTCGGGGAGCTGGATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGTAGCCGAAGTTCCCGAGCTTTCCTTTTCACATTTGGCTCATGCTCATTCCTACAACAGACCTATGAAGTCCAATGTACCCAACAAGAAGCAGAGGCTTGAGTACCGGTATGATGATGAAGAAGAGCACTTCCTAGTCCCCGACCTAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010099 GO:0010100 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

238

Amino Acids

26.66

Weight (kDa)

4.9

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	3 - 45	5.1e-06	B-box zinc finger
zf-B_box	PF00643	55 - 95	1.5e-06	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06040 AT1G06040 AT2G31380
fragaria_vesca	FvH4_4g10930 FvH4_4g10930
malus_domestica	MD04G1042700.v1.1 MD09G1251100.v1.1 MD17G1243400.v1.1
prunus_persica	Prupe.1G197100_v2.0.a1 Prupe.3G155900_v2.0.a1
pyrus_communis	pycom04g03750 pycom17g24600
rosa_chinensis	RchiOBHm_Chr4g0406441
rosa_laevigata	RLG00000008771
rosa_multiflora	Rmu_ssc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_5G00351320
rosa_rugosa	Rorug04G0071300
rosa_samantha	Rh4AG138300 Rh4BG135500
rosa_wichuraiana	Rw4G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	392, 408
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	2 cut(s)	158, 440
AcuI	CTGAAG	1 cut(s)	430
AfaI	GTAC	2 cut(s)	642, 668
AfiI	CCNNNNNNNGG	2 cut(s)	187, 710
AgeI	ACCGGT	2 cut(s)	562, 669
AhlI	ACTAGT	1 cut(s)	326
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	6 cut(s)	32, 65, 194, 450, 505, 583
AluI	AGCT	6 cut(s)	32, 65, 194, 450, 505, 583
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	1 cut(s)	386
Ama87I	CYCGRG	2 cut(s)	497, 578
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	4 cut(s)	65, 101, 191, 410
ApoI	RAATTY	2 cut(s)	158, 440
AsiGI	ACCGGT	2 cut(s)	562, 669
AspA2I	CCTAGG	1 cut(s)	709
AspLEI	GCGC	2 cut(s)	77, 259
AsuHPI	GGTGA	2 cut(s)	272, 548
AsuNHI	GCTAGC	1 cut(s)	116
AvaI	CYCGRG	2 cut(s)	497, 578
AvrII	CCTAGG	1 cut(s)	709
BanII	GRGCYC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	4 cut(s)	52, 88, 203, 397
BccI	CCATC	3 cut(s)	373, 424, 517
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	386
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	4 cut(s)	117, 327, 698, 710
BfmI	CTRYAG	2 cut(s)	229, 466
BisI	GCNGC	4 cut(s)	66, 102, 192, 411
BlnI	CCTAGG	1 cut(s)	709
BlsI	GCNGC	4 cut(s)	67, 103, 193, 412
BmeT110I	CYCGRG	2 cut(s)	497, 578
BmtI	GCTAGC	1 cut(s)	120
BpuEI	CTTGAG	2 cut(s)	203, 683
BsaJI	CCNNGG	1 cut(s)	709
BsaWI	WCCGGW	2 cut(s)	562, 669
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 710
Bse118I	RCCGGY	2 cut(s)	562, 669
Bse1I	ACTGG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	709
BseLI	CCNNNNNNNGG	2 cut(s)	187, 710
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	304
BseXI	GCAGC	4 cut(s)	52, 88, 203, 397
BshFI	GGCC	1 cut(s)	38
BshTI	ACCGGT	2 cut(s)	562, 669
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	2 cut(s)	497, 578
BsiSI	CCGG	3 cut(s)	35, 563, 670
BslFI	GGGAC	1 cut(s)	686
BslI	CCNNNNNNNGG	2 cut(s)	187, 710
BsmAI	GTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	686
BsnI	GGCC	1 cut(s)	38
BsoBI	CYCGRG	2 cut(s)	497, 578
Bsp1286I	GDGCHC	2 cut(s)	223, 693
Bsp143I	GATC	3 cut(s)	457, 493, 547
BspACI	CCGC	2 cut(s)	392, 408
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	412
BspMAI	CTGCAG	2 cut(s)	233, 470
BspOI	GCTAGC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	681
BsrFI	RCCGGY	2 cut(s)	562, 669
BsrI	ACTGG	1 cut(s)	304
BssAI	RCCGGY	2 cut(s)	562, 669
BssECI	CCNNGG	1 cut(s)	709
BssMI	GATC	3 cut(s)	457, 493, 547
BssT1I	CCWWGG	1 cut(s)	709
Bst6I	CTCTTC	1 cut(s)	681
BstAPI	GCANNNNNTGC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	118, 516
BstDEI	CTNAG	3 cut(s)	292, 317, 399
BstEII	GGTNACC	1 cut(s)	536
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstHHI	GCGC	2 cut(s)	77, 259
BstKTI	GATC	3 cut(s)	460, 496, 550
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	3 cut(s)	457, 493, 547
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 74, 177, 237, 254, 400, 511
BstPI	GGTNACC	1 cut(s)	536
BstSFI	CTRYAG	2 cut(s)	229, 466
BstV1I	GCAGC	4 cut(s)	52, 88, 203, 397
BsuRI	GGCC	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	118, 516
CfoI	GCGC	2 cut(s)	77, 259
Cfr10I	RCCGGY	2 cut(s)	562, 669
Csp6I	GTAC	2 cut(s)	641, 667
CspAI	ACCGGT	2 cut(s)	562, 669
CviAII	CATG	3 cut(s)	98, 254, 605
CviQI	GTAC	2 cut(s)	641, 667
DdeI	CTNAG	3 cut(s)	292, 317, 399
DpnI	GATC	3 cut(s)	459, 495, 549
DpnII	GATC	3 cut(s)	457, 493, 547
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Eco130I	CCWWGG	1 cut(s)	709
Eco24I	GRGCYC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	430
Eco88I	CYCGRG	2 cut(s)	497, 578
Eco91I	GGTNACC	1 cut(s)	536
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoO65I	GGTNACC	1 cut(s)	536
EcoRI	GAATTC	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	709
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	709
FaeI	CATG	3 cut(s)	101, 257, 608
FaiI	YATR	8 cut(s)	47, 49, 99, 200, 255, 606, 629, 675
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	3 cut(s)	97, 253, 604
FauI	CCCGC	1 cut(s)	415
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	4 cut(s)	66, 102, 192, 411
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	4 cut(s)	66, 102, 192, 411
FspBI	CTAG	4 cut(s)	117, 327, 698, 710
GlaI	GCGC	2 cut(s)	76, 258
GluI	GCNGC	4 cut(s)	66, 102, 192, 411
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	3 cut(s)	35, 563, 670
HhaI	GCGC	2 cut(s)	77, 259
Hin1II	CATG	3 cut(s)	101, 257, 608
Hin6I	GCGC	2 cut(s)	75, 257
HinP1I	GCGC	2 cut(s)	75, 257
HinfI	GANTC	4 cut(s)	143, 303, 352, 379
HpaII	CCGG	3 cut(s)	35, 563, 670
HphI	GGTGA	2 cut(s)	272, 548
Hpy188I	TCNGA	2 cut(s)	308, 457
Hpy188III	TCNNGA	5 cut(s)	140, 338, 461, 551, 578
HpyAV	CCTTC	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	4 cut(s)	231, 333, 468, 518
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 74, 177, 237, 254, 400, 511
HpyF3I	CTNAG	3 cut(s)	292, 317, 399
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	101, 257, 608
HspAI	GCGC	2 cut(s)	75, 257
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	3 cut(s)	457, 493, 547
LguI	GCTCTTC	1 cut(s)	681
LmnI	GCTCC	3 cut(s)	37, 418, 502
LpnPI	CCDG	9 cut(s)	48, 181, 285, 296, 491, 554, 558, 576, 683
Lsp1109I	GCAGC	4 cut(s)	52, 88, 203, 397
MaeI	CTAG	4 cut(s)	117, 327, 698, 710
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	83, 536
MalI	GATC	3 cut(s)	459, 495, 549
MboI	GATC	3 cut(s)	457, 493, 547
MboII	GAAGA	4 cut(s)	16, 436, 695, 698
MhlI	GDGCHC	2 cut(s)	223, 693
MluCI	AATT	2 cut(s)	158, 440
MlyI	GAGTC	2 cut(s)	137, 388
MnlI	CCTC	7 cut(s)	85, 174, 205, 238, 279, 547, 651
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	3 cut(s)	35, 563, 670
MwoI	GCNNNNNNNGC	7 cut(s)	62, 74, 177, 237, 254, 400, 511
NdeII	GATC	3 cut(s)	457, 493, 547
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	3 cut(s)	101, 257, 608
NmuCI	GTSAC	2 cut(s)	83, 536
PciSI	GCTCTTC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	303, 352
PinAI	ACCGGT	2 cut(s)	562, 669
PkrI	GCNGC	4 cut(s)	67, 103, 193, 412
PleI	GAGTC	2 cut(s)	137, 387
PpsI	GAGTC	2 cut(s)	137, 387
PspEI	GGTNACC	1 cut(s)	536
PsrI	GAACNNNNNNTAC	2 cut(s)	558, 590
PstI	CTGCAG	2 cut(s)	233, 470
RsaI	GTAC	2 cut(s)	642, 668
RsaNI	GTAC	2 cut(s)	641, 667
SapI	GCTCTTC	1 cut(s)	681
SatI	GCNGC	4 cut(s)	66, 102, 192, 411
Sau3AI	GATC	3 cut(s)	457, 493, 547
SchI	GAGTC	2 cut(s)	137, 388
SduI	GDGCHC	2 cut(s)	223, 693
SfcI	CTRYAG	2 cut(s)	229, 466
SmlI	CTYRAG	2 cut(s)	182, 662
SmoI	CTYRAG	2 cut(s)	182, 662
SpeI	ACTAGT	1 cut(s)	326
Sse9I	AATT	2 cut(s)	158, 440
SsiI	CCGC	2 cut(s)	392, 408
SspMI	CTAG	4 cut(s)	117, 327, 698, 710
StyI	CCWWGG	1 cut(s)	709
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	492
TasI	AATT	2 cut(s)	158, 440
TfiI	GAWTC	2 cut(s)	303, 352
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	2 cut(s)	83, 536
TseI	GCWGC	4 cut(s)	65, 101, 191, 410
Tsp45I	GTSAC	2 cut(s)	83, 536
TspDTI	ATGAA	7 cut(s)	17, 75, 86, 187, 453, 644, 696
TspRI	CASTG	1 cut(s)	304
XagI	CCTNNNNNAGG	1 cut(s)	185
XapI	RAATTY	2 cut(s)	158, 440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
XmaJI	CCTAGG	1 cut(s)	709
XspI	CTAG	4 cut(s)	117, 327, 698, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.