Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010888

Physical Location & Seq

Genomic Coordinates Forward (+)

32201116 .. 32202909

Gene Structure 1794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1251100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAAAATTCAGTGTGATGCGTGCGAGAAGGCTCCGGCGAAGGTGATTTGTTGTGCCGACGAGGCAGCGCTGTGCGCCAAATGTGACGTGGAAGTACATGCAGCGAATAAGCTTGCAAGCAAGAACCAGAGGCTTCTCCTTGAGTGCCTCTCAAAGTCAAACAAACTCCCTACATGTGATATATGCCAAGACAAGGCAGCTTTTATATTCTGCGTCGAAGACAGAGCCCTCGTTTGTCAGGATTGCGATGAATTGATTCATTCGGCAAATAGCCGCTCTGCGAACCACCAGAGGTTCCTCGCCACTGGAATCCGAGTGGCATTGAGCACCGGCTGTTCTAATGACACTGAACCGAGTAGCTTGGAGCCACCCAGTAGTCACAGCTCACACAAGATCGTTTCAACAAAAATTCCAACACCACAGGCTTCTGGTATCTCATCCCCTTGGGGTGTTGATGACTTGCTGCAGTTATCAGATTTTGAATCTTCCGACAAGAAAGAGTCGTTCGAGTTTGGTGAACTTGAATGGATAGCAGACATGGGTGTTTTCGGCGAAGAGCAGTTTCCTCAAAAAGCCATGGCAGCAGTAGCTGAAGTTCCTAAGCTTCTGGTGTCACAATCAACTAATTTCACCTCGTATAGACCCGCTAAATTGAACAATCCGTACAAGAAGCCTAGGATCGAAATGTTGGAGGACGACGATGATCACTTTACCGTCCCTGATCTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010099 GO:0010100 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

244

Amino Acids

26.61

Weight (kDa)

4.95

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	55 - 97	4.9e-08	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06040 AT1G06040 AT2G31380
fragaria_vesca	FvH4_4g10930 FvH4_4g10930
malus_domestica	MD04G1042700.v1.1 MD09G1251100.v1.1 MD17G1243400.v1.1
prunus_persica	Prupe.1G197100_v2.0.a1 Prupe.3G155900_v2.0.a1
pyrus_communis	pycom04g03750 pycom17g24600
rosa_chinensis	RchiOBHm_Chr4g0406441
rosa_laevigata	RLG00000008771
rosa_multiflora	Rmu_ssc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_5G00351320
rosa_rugosa	Rorug04G0071300
rosa_samantha	Rh4AG138300 Rh4BG135500
rosa_wichuraiana	Rw4G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	276
AciI	CCGC	2 cut(s)	274, 645
AclWI	GGATC	1 cut(s)	686
AcsI	RAATTY	2 cut(s)	6, 408
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	2 cut(s)	96, 665
AfeI	AGCGCT	1 cut(s)	69
AfiI	CCNNNNNNNGG	2 cut(s)	193, 725
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	4 cut(s)	402, 482, 524, 655
AjiI	CACGTC	1 cut(s)	88
AluBI	AGCT	6 cut(s)	112, 200, 360, 384, 590, 604
AluI	AGCT	6 cut(s)	112, 200, 360, 384, 590, 604
Alw21I	GWGCWC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	686
AlwNI	CAGNNNCTG	1 cut(s)	590
Aor51HI	AGCGCT	1 cut(s)	69
ApeKI	GCWGC	5 cut(s)	65, 101, 197, 463, 581
ApoI	RAATTY	2 cut(s)	6, 408
Asp700I	GAANNNNTTC	1 cut(s)	255
AspA2I	CCTAGG	1 cut(s)	674
AspLEI	GCGC	2 cut(s)	70, 77
AsuHPI	GGTGA	3 cut(s)	55, 527, 622
AvrII	CCTAGG	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	5 cut(s)	77, 113, 209, 450, 593
BclI	TGATCA	1 cut(s)	703
BfaI	CTAG	1 cut(s)	675
BfmI	CTRYAG	1 cut(s)	464
BfoI	RGCGCY	1 cut(s)	71
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	6 cut(s)	66, 102, 198, 274, 464, 582
BlnI	CCTAGG	1 cut(s)	674
BlsI	GCNGC	6 cut(s)	67, 103, 199, 275, 465, 583
BmgBI	CACGTC	1 cut(s)	88
BmiI	GGNNCC	3 cut(s)	33, 296, 366
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	7
BmuI	ACTGGG	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
Bpu10I	CCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	443, 576, 674
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 725
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	310, 372
BseDI	CCNNGG	3 cut(s)	443, 576, 674
BseGI	GGATG	1 cut(s)	437
BseLI	CCNNNNNNNGG	2 cut(s)	193, 725
BseNI	ACTGG	2 cut(s)	310, 372
BseXI	GCAGC	5 cut(s)	77, 113, 209, 450, 593
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	35, 330
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	2 cut(s)	193, 725
BsmFI	GGGAC	1 cut(s)	701
Bsp1286I	GDGCHC	2 cut(s)	229, 329
Bsp143I	GATC	4 cut(s)	393, 678, 703, 721
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	2 cut(s)	274, 645
BspLI	GGNNCC	3 cut(s)	33, 296, 366
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	1 cut(s)	686
BspQI	GCTCTTC	1 cut(s)	549
BsrBI	CCGCTC	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	310, 372
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	3 cut(s)	443, 576, 674
BssMI	GATC	4 cut(s)	393, 678, 703, 721
BssT1I	CCWWGG	3 cut(s)	443, 576, 674
Bst4CI	ACNGT	1 cut(s)	715
Bst6I	CTCTTC	1 cut(s)	549
BstC8I	GCNNGC	3 cut(s)	22, 114, 118
BstDEI	CTNAG	1 cut(s)	600
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	70, 77
BstKTI	GATC	4 cut(s)	396, 681, 706, 724
BstMBI	GATC	4 cut(s)	393, 678, 703, 721
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 74, 581, 587
BstNSI	RCATGY	2 cut(s)	101, 177
BstSFI	CTRYAG	1 cut(s)	464
BstV1I	GCAGC	5 cut(s)	77, 113, 209, 450, 593
BstV2I	GAAGAC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	576
BtgZI	GCGATG	1 cut(s)	261
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	437
BtsIMutI	CAGTG	3 cut(s)	17, 303, 345
Cac8I	GCNNGC	3 cut(s)	22, 114, 118
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	2 cut(s)	70, 77
Cfr10I	RCCGGY	1 cut(s)	329
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	95, 664
CviAII	CATG	4 cut(s)	98, 174, 538, 577
CviQI	GTAC	2 cut(s)	95, 664
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	4 cut(s)	395, 680, 705, 723
DpnII	GATC	4 cut(s)	393, 678, 703, 721
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco130I	CCWWGG	3 cut(s)	443, 576, 674
Eco24I	GRGCYC	1 cut(s)	229
Eco47III	AGCGCT	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	612
EcoT14I	CCWWGG	3 cut(s)	443, 576, 674
EcoT38I	GRGCYC	1 cut(s)	229
ErhI	CCWWGG	3 cut(s)	443, 576, 674
FaeI	CATG	4 cut(s)	101, 177, 541, 580
FaiI	YATR	8 cut(s)	99, 175, 182, 184, 206, 539, 578, 639
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	4 cut(s)	97, 173, 537, 576
FauI	CCCGC	1 cut(s)	652
FbaI	TGATCA	1 cut(s)	703
Fnu4HI	GCNGC	6 cut(s)	66, 102, 198, 274, 464, 582
FokI	GGATG	1 cut(s)	424
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	6 cut(s)	66, 102, 198, 274, 464, 582
FspBI	CTAG	1 cut(s)	675
GlaI	GCGC	2 cut(s)	69, 76
GluI	GCNGC	6 cut(s)	66, 102, 198, 274, 464, 582
HaeII	RGCGCY	1 cut(s)	71
HapII	CCGG	2 cut(s)	35, 330
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	2 cut(s)	70, 77
Hin1II	CATG	4 cut(s)	101, 177, 541, 580
Hin6I	GCGC	2 cut(s)	68, 75
HinP1I	GCGC	2 cut(s)	68, 75
HindIII	AAGCTT	2 cut(s)	110, 602
HinfI	GANTC	4 cut(s)	256, 309, 482, 500
HpaII	CCGG	2 cut(s)	35, 330
HphI	GGTGA	3 cut(s)	55, 527, 622
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	3 cut(s)	314, 475, 490
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	518
Hpy99I	CGWCG	3 cut(s)	62, 218, 701
HpyAV	CCTTC	2 cut(s)	22, 34
HpyCH4III	ACNGT	1 cut(s)	715
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	3 cut(s)	101, 116, 466
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 74, 581, 587
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	101, 177, 541, 580
HspAI	GCGC	2 cut(s)	68, 75
Ksp22I	TGATCA	1 cut(s)	703
Kzo9I	GATC	4 cut(s)	393, 678, 703, 721
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	2 cut(s)	37, 364
Lsp1109I	GCAGC	5 cut(s)	77, 113, 209, 450, 593
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	675
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	83, 377, 612
MalI	GATC	4 cut(s)	395, 680, 705, 723
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	4 cut(s)	393, 678, 703, 721
MboII	GAAGA	3 cut(s)	230, 477, 566
MhlI	GDGCHC	2 cut(s)	229, 329
MluCI	AATT	5 cut(s)	6, 251, 408, 625, 650
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	3 cut(s)	437, 513, 669
MnlI	CCTC	9 cut(s)	55, 123, 158, 239, 285, 308, 576, 643, 685
MroXI	GAANNNNTTC	1 cut(s)	255
MspI	CCGG	2 cut(s)	35, 330
MwoI	GCNNNNNNNGC	4 cut(s)	62, 74, 581, 587
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	4 cut(s)	393, 678, 703, 721
NlaIII	CATG	4 cut(s)	101, 177, 541, 580
NlaIV	GGNNCC	3 cut(s)	33, 296, 366
NmuCI	GTSAC	3 cut(s)	83, 377, 612
NspI	RCATGY	2 cut(s)	101, 177
PciI	ACATGT	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	256, 309, 482
PkrI	GCNGC	6 cut(s)	67, 103, 199, 275, 465, 583
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PscI	ACATGT	1 cut(s)	173
PspN4I	GGNNCC	3 cut(s)	33, 296, 366
PsrI	GAACNNNNNNTAC	4 cut(s)	579, 611, 647, 679
PstI	CTGCAG	1 cut(s)	468
PstNI	CAGNNNCTG	1 cut(s)	590
RsaI	GTAC	2 cut(s)	96, 665
RsaNI	GTAC	2 cut(s)	95, 664
SapI	GCTCTTC	1 cut(s)	549
SatI	GCNGC	6 cut(s)	66, 102, 198, 274, 464, 582
Sau3AI	GATC	4 cut(s)	393, 678, 703, 721
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	2 cut(s)	229, 329
SfaNI	GCATC	1 cut(s)	7
SfcI	CTRYAG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	5 cut(s)	6, 251, 408, 625, 650
SsiI	CCGC	2 cut(s)	274, 645
SspMI	CTAG	1 cut(s)	675
StyI	CCWWGG	3 cut(s)	443, 576, 674
TaaI	ACNGT	1 cut(s)	715
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	3 cut(s)	216, 507, 681
TasI	AATT	5 cut(s)	6, 251, 408, 625, 650
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	3 cut(s)	256, 309, 482
TscAI	CASTG	3 cut(s)	17, 310, 352
TseFI	GTSAC	3 cut(s)	83, 377, 612
TseI	GCWGC	5 cut(s)	65, 101, 197, 463, 581
Tsp45I	GTSAC	3 cut(s)	83, 377, 612
TspDTI	ATGAA	3 cut(s)	17, 248, 264
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	3 cut(s)	17, 310, 352
XapI	RAATTY	2 cut(s)	6, 408
XceI	RCATGY	2 cut(s)	101, 177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmaJI	CCTAGG	1 cut(s)	674
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.