Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010888

Physical Location & Seq

Genomic Coordinates Reverse (-)

14596852 .. 14598977

Gene Structure 2126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAAATTCAGTGCGATGTGTGTGAGAAAGCTCCGGCGACGGTGATCTGTTGCGCTGACGAGGCGGCCCTGTGTGCCAAATGCGATGTGGAAGTGCACGCAGCAAACAAACTCGCCAGCAAGCATCAGAGGCTTGTTCTTGAATCTCTCTCCAACAAGCTCCCTAGATGTGATATATGCCAAGATAAGGCTGCTTTTATCTTCTGCGTTGAAGACAGAGCCCTGTTTTGTCAGGACTGTGATGAATCAATTCATTCAGGAAATACCCTCTCTGCCTACCACCAGAGGTTCCTCGCCACCGGAATCCGCGTTGCTTTGAGCTCCGCCTGTAATAACAAGGACGCTCAAACATGTAGCTTAGACCCACCCAATCAAACTACTTCACACCTAGTTTCAACCAAACTGCCTAATTCTCTCTTCTCGCCTCCTTGGGCGGTTGATGACTTGCTCCAGTTATCAGATTTCGAATCTTCTGACAAGAAAGAGTCGCTTGAGTTTGGAGAGCTTGAATGGATGGCAGATATGGGTCTTTTTGGTGAGCAGTTTCCTCAGGAGGCTTTGGCAGCAGCTGAAGTACCTCAGCTTCCAGTATCACAATCTAGCAACTATACATCATATAGACCCCCGAAATCAAACAGTCCCTACAAGAAGCCTAGGATTGAAATCCCAGATGATGATGATGAGCATTTCACTGTTCCTGATCTTGGCATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010099 GO:0010100 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

239

Amino Acids

26.29

Weight (kDa)

4.71

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	53 - 87	1.1e-07	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06040 AT1G06040 AT2G31380
fragaria_vesca	FvH4_4g10930 FvH4_4g10930
malus_domestica	MD04G1042700.v1.1 MD09G1251100.v1.1 MD17G1243400.v1.1
prunus_persica	Prupe.1G197100_v2.0.a1 Prupe.3G155900_v2.0.a1
pyrus_communis	pycom04g03750 pycom17g24600
rosa_chinensis	RchiOBHm_Chr4g0406441
rosa_laevigata	RLG00000008771
rosa_multiflora	Rmu_ssc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_5G00351320
rosa_rugosa	Rorug04G0071300
rosa_samantha	Rh4AG138300 Rh4BG135500
rosa_wichuraiana	Rw4G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	309
AciI	CCGC	4 cut(s)	65, 307, 324, 434
AcsI	RAATTY	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	1 cut(s)	576
AfiI	CCNNNNNNNGG	2 cut(s)	187, 704
AflIII	ACRYGT	1 cut(s)	350
AgsI	TTSAA	5 cut(s)	143, 212, 396, 509, 662
AluBI	AGCT	7 cut(s)	32, 160, 321, 357, 505, 569, 583
AluI	AGCT	7 cut(s)	32, 160, 321, 357, 505, 569, 583
Alw21I	GWGCWC	2 cut(s)	99, 323
Alw44I	GTGCAC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	1 cut(s)	66
ApaLI	GTGCAC	1 cut(s)	95
ApeKI	GCWGC	4 cut(s)	101, 191, 563, 566
ApoI	RAATTY	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	249
AspA2I	CCTAGG	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	2 cut(s)	55, 548
AsuII	TTCGAA	1 cut(s)	465
AvrII	CCTAGG	1 cut(s)	653
AxyI	CCTNAGG	1 cut(s)	549
BaeGI	GKGCMC	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	223, 323
BarI	GAAGNNNNNNTAC	2 cut(s)	567, 599
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	99, 323
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	4 cut(s)	113, 178, 575, 578
BccI	CCATC	1 cut(s)	508
BfaI	CTAG	4 cut(s)	165, 389, 600, 654
BisI	GCNGC	5 cut(s)	66, 102, 192, 564, 567
BlnI	CCTAGG	1 cut(s)	653
BlsI	GCNGC	5 cut(s)	67, 103, 193, 565, 568
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	290
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	434
Bpu10I	CCTNAGC	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	512
BsaBI	GATNNNNATC	1 cut(s)	662
BsaJI	CCNNGG	2 cut(s)	428, 653
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 704
Bse1I	ACTGG	2 cut(s)	451, 587
Bse21I	CCTNAGG	1 cut(s)	549
Bse8I	GATNNNNATC	1 cut(s)	662
BseDI	CCNNGG	2 cut(s)	428, 653
BseGI	GGATG	1 cut(s)	519
BseJI	GATNNNNATC	1 cut(s)	662
BseLI	CCNNNNNNNGG	2 cut(s)	187, 704
BseMII	CTCAG	2 cut(s)	563, 593
BseNI	ACTGG	2 cut(s)	451, 587
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	4 cut(s)	113, 178, 575, 578
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	68
BsiHKAI	GWGCWC	2 cut(s)	99, 323
BsiSI	CCGG	2 cut(s)	35, 300
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	2 cut(s)	187, 704
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	1 cut(s)	68
Bsp119I	TTCGAA	1 cut(s)	465
Bsp1286I	GDGCHC	3 cut(s)	99, 223, 323
Bsp143I	GATC	2 cut(s)	45, 700
BspACI	CCGC	4 cut(s)	65, 307, 324, 434
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	2 cut(s)	562, 592
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	451, 587
BssECI	CCNNGG	2 cut(s)	428, 653
BssMI	GATC	2 cut(s)	45, 700
BssT1I	CCWWGG	2 cut(s)	428, 653
Bst4CI	ACNGT	4 cut(s)	43, 239, 638, 694
Bst6I	CTCTTC	1 cut(s)	422
BstBI	TTCGAA	1 cut(s)	465
BstC8I	GCNNGC	3 cut(s)	99, 118, 122
BstDEI	CTNAG	3 cut(s)	358, 549, 579
BstF5I	GGATG	1 cut(s)	519
BstFNI	CGCG	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	48, 703
BstMBI	GATC	2 cut(s)	45, 700
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 74, 130, 563
BstNSI	RCATGY	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	4 cut(s)	113, 178, 575, 578
BstV2I	GAAGAC	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	1 cut(s)	68
BtgZI	GCGATG	2 cut(s)	30, 99
BtsCI	GGATG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	17, 690
Cac8I	GCNNGC	3 cut(s)	99, 118, 122
CaiI	CAGNNNCTG	1 cut(s)	569
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	575
CviAII	CATG	1 cut(s)	351
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	3 cut(s)	358, 549, 579
DpnI	GATC	2 cut(s)	47, 702
DpnII	GATC	2 cut(s)	45, 700
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
EciI	GGCGGA	1 cut(s)	313
Ecl136II	GAGCTC	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	428, 653
Eco24I	GRGCYC	2 cut(s)	223, 323
Eco53kI	GAGCTC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	591
Eco81I	CCTNAGG	1 cut(s)	549
EcoICRI	GAGCTC	1 cut(s)	321
EcoT14I	CCWWGG	2 cut(s)	428, 653
EcoT38I	GRGCYC	2 cut(s)	223, 323
ErhI	CCWWGG	2 cut(s)	428, 653
FaeI	CATG	1 cut(s)	354
FaiI	YATR	8 cut(s)	176, 178, 352, 524, 609, 616, 618, 710
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	1 cut(s)	350
Fnu4HI	GCNGC	5 cut(s)	66, 102, 192, 564, 567
FokI	GGATG	1 cut(s)	526
FriOI	GRGCYC	2 cut(s)	223, 323
Fsp4HI	GCNGC	5 cut(s)	66, 102, 192, 564, 567
FspBI	CTAG	4 cut(s)	165, 389, 600, 654
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	5 cut(s)	66, 102, 192, 564, 567
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	2 cut(s)	35, 300
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	354
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	5 cut(s)	143, 245, 303, 467, 485
HpaII	CCGG	2 cut(s)	35, 300
HphI	GGTGA	2 cut(s)	55, 548
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	129, 460, 475
Hpy188III	TCNNGA	5 cut(s)	140, 233, 258, 551, 698
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	43
HpyCH4III	ACNGT	4 cut(s)	43, 239, 638, 694
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 74, 130, 563
HpyF3I	CTNAG	3 cut(s)	358, 549, 579
Hsp92II	CATG	1 cut(s)	354
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	45, 700
LmnI	GCTCC	4 cut(s)	37, 165, 326, 453
Lsp1109I	GCAGC	4 cut(s)	113, 178, 575, 578
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	4 cut(s)	165, 389, 600, 654
MalI	GATC	2 cut(s)	47, 702
MboI	GATC	2 cut(s)	45, 700
MboII	GAAGA	4 cut(s)	193, 224, 409, 462
MhlI	GDGCHC	3 cut(s)	99, 223, 323
MluCI	AATT	3 cut(s)	6, 249, 409
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	9 cut(s)	55, 123, 278, 279, 302, 435, 547, 558, 588
MroXI	GAANNNNTTC	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	2 cut(s)	35, 300
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	4 cut(s)	62, 74, 130, 563
NdeII	GATC	2 cut(s)	45, 700
NlaIII	CATG	1 cut(s)	354
NlaIV	GGNNCC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	354
NspV	TTCGAA	1 cut(s)	465
PciI	ACATGT	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	4 cut(s)	143, 245, 303, 467
PkrI	GCNGC	5 cut(s)	67, 103, 193, 565, 568
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PscI	ACATGT	1 cut(s)	350
Psp124BI	GAGCTC	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	569
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
SacI	GAGCTC	1 cut(s)	323
SatI	GCNGC	5 cut(s)	66, 102, 192, 564, 567
Sau3AI	GATC	2 cut(s)	45, 700
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	494
SduI	GDGCHC	3 cut(s)	99, 223, 323
SfaNI	GCATC	1 cut(s)	133
SfuI	TTCGAA	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	3 cut(s)	6, 249, 409
SsiI	CCGC	4 cut(s)	65, 307, 324, 434
SspMI	CTAG	4 cut(s)	165, 389, 600, 654
SstI	GAGCTC	1 cut(s)	323
StyI	CCWWGG	2 cut(s)	428, 653
TaaI	ACNGT	4 cut(s)	43, 239, 638, 694
TaqI	TCGA	1 cut(s)	465
TasI	AATT	3 cut(s)	6, 249, 409
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	4 cut(s)	143, 245, 303, 467
TscAI	CASTG	2 cut(s)	17, 697
TseI	GCWGC	4 cut(s)	101, 191, 563, 566
TspDTI	ATGAA	3 cut(s)	17, 242, 258
TspRI	CASTG	2 cut(s)	17, 697
VneI	GTGCAC	1 cut(s)	95
XapI	RAATTY	1 cut(s)	6
XceI	RCATGY	1 cut(s)	354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmaJI	CCTAGG	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	4 cut(s)	165, 389, 600, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.