Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010888

Physical Location & Seq

Genomic Coordinates Reverse (-)

5031249 .. 5034800

Gene Structure 3552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1042700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAGATTCAGTGTGATGTGTGCGAGAAGGCGCCGGCGACGGTGATTTGTTGCGCCGACGAGGCGGCTCTGTGCGCCAAATGCGACGTTGAAGTACACGCAGCGAATAAGCTTGCAAGCAAACACCAGAGGCTGCTCCTTCAGAGCCTCTCCAACAAGCTTCCTAAATGCGACATTTGCCAAGATAAGATAGCTTTTATATTCTGCGTAGAAGACAGAGCCCTCTTTTGTCAGGATTGTGATGAACCAATTCATTCAGCCAATAGCCTCTCTGCAAACCACCAGAGGTTCCTTGCCACAGGAATCCGAGTGCCATTGGCCTCCAGTAGTACTAAGGAAGCTGAAACGAGTAGCTTGGAGCCATCCAATCAAGGTGCACAGAAGATTTCAACAAAAGTCTCAGCACCACAGGCTTCAGGCATCTCATCACCTTGGGGTGTTGATGACTTACTGCAATTATCAGATTTTGAATCTTCTGACAAGAAGGATTCGCTTGAGTTTGGAGAGCTCGAATGGATAGCAGACATGGGTATTTTCGGTGATCAGTATCCTCAGGAGGCACCGGCAGCAGCTGAAGTTCCGCAGCTCCCAGCACCGGAGTCTAGCAATTTTACCTCCTACAGACCCCCTAAATCGAGCAGTCCGCAGAAGAAGCCTAGGATTGAAATCCCAGATGACGATGATGAGTATTTCACTGTTCCTGACCTCGGCAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010099 GO:0010100 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

240

Amino Acids

26.07

Weight (kDa)

4.68

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	53 - 95	6.4e-07	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06040 AT1G06040 AT2G31380
fragaria_vesca	FvH4_4g10930 FvH4_4g10930
malus_domestica	MD04G1042700.v1.1 MD09G1251100.v1.1 MD17G1243400.v1.1
prunus_persica	Prupe.1G197100_v2.0.a1 Prupe.3G155900_v2.0.a1
pyrus_communis	pycom04g03750 pycom17g24600
rosa_chinensis	RchiOBHm_Chr4g0406441
rosa_laevigata	RLG00000008771
rosa_multiflora	Rmu_ssc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_5G00351320
rosa_rugosa	Rorug04G0071300
rosa_samantha	Rh4AG138300 Rh4BG135500
rosa_wichuraiana	Rw4G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	31, 559
AciI	CCGC	3 cut(s)	65, 581, 644
AcuI	CTGAAG	3 cut(s)	125, 399, 594
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	2 cut(s)	96, 331
AfiI	CCNNNNNNNGG	2 cut(s)	595, 707
AgsI	TTSAA	4 cut(s)	92, 390, 470, 665
AluBI	AGCT	8 cut(s)	112, 160, 194, 341, 354, 508, 572, 586
AluI	AGCT	8 cut(s)	112, 160, 194, 341, 354, 508, 572, 586
Alw21I	GWGCWC	2 cut(s)	379, 510
Alw26I	GTCTC	1 cut(s)	403
Alw44I	GTGCAC	1 cut(s)	375
AlwNI	CAGNNNCTG	2 cut(s)	133, 572
AoxI	GGCC	1 cut(s)	318
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	5 cut(s)	101, 133, 566, 569, 583
Asp700I	GAANNNNTTC	1 cut(s)	249
AspA2I	CCTAGG	1 cut(s)	656
AspLEI	GCGC	3 cut(s)	34, 56, 77
AsuHPI	GGTGA	3 cut(s)	55, 420, 551
AvrII	CCTAGG	1 cut(s)	656
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	379
BanI	GGYRCC	2 cut(s)	31, 559
BanII	GRGCYC	2 cut(s)	223, 510
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	379, 510
BbvI	GCAGC	5 cut(s)	113, 120, 578, 581, 595
BccI	CCATC	1 cut(s)	370
BciVI	GTATCC	1 cut(s)	558
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	403
BfaI	CTAG	2 cut(s)	603, 657
BfmI	CTRYAG	1 cut(s)	619
BfoI	RGCGCY	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	558
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	6 cut(s)	66, 102, 134, 567, 570, 584
BlnI	CCTAGG	1 cut(s)	656
BlsI	GCNGC	6 cut(s)	67, 103, 135, 568, 571, 585
BmcAI	AGTACT	1 cut(s)	331
BmiI	GGNNCC	4 cut(s)	33, 290, 360, 561
BmsI	GCATC	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	515
BsaBI	GATNNNNATC	2 cut(s)	546, 665
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	431, 656, 706
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	2 cut(s)	595, 707
Bse118I	RCCGGY	2 cut(s)	34, 562
Bse1I	ACTGG	1 cut(s)	324
Bse21I	CCTNAGG	1 cut(s)	552
Bse8I	GATNNNNATC	2 cut(s)	546, 665
BseDI	CCNNGG	3 cut(s)	431, 656, 706
BseGI	GGATG	1 cut(s)	362
BseJI	GATNNNNATC	2 cut(s)	546, 665
BseLI	CCNNNNNNNGG	2 cut(s)	595, 707
BseMII	CTCAG	2 cut(s)	414, 566
BseNI	ACTGG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	5 cut(s)	113, 120, 578, 581, 595
BseYI	CCCAGC	1 cut(s)	589
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	2 cut(s)	31, 559
BsiHKAI	GWGCWC	2 cut(s)	379, 510
BsiSI	CCGG	3 cut(s)	35, 563, 596
BslI	CCNNNNNNNGG	2 cut(s)	595, 707
BsmAI	GTCTC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	320
Bsp1286I	GDGCHC	3 cut(s)	223, 379, 510
Bsp143I	GATC	1 cut(s)	541
BspACI	CCGC	3 cut(s)	65, 581, 644
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	2 cut(s)	413, 565
BspLI	GGNNCC	4 cut(s)	33, 290, 360, 561
BspT107I	GGYRCC	2 cut(s)	31, 559
BsrFI	RCCGGY	2 cut(s)	34, 562
BsrI	ACTGG	1 cut(s)	324
BssAI	RCCGGY	2 cut(s)	34, 562
BssECI	CCNNGG	3 cut(s)	431, 656, 706
BssMI	GATC	1 cut(s)	541
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	2 cut(s)	431, 656
Bst4CI	ACNGT	2 cut(s)	43, 697
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	36, 114, 118
BstDEI	CTNAG	3 cut(s)	333, 400, 552
BstF5I	GGATG	1 cut(s)	362
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	3 cut(s)	34, 56, 77
BstKTI	GATC	1 cut(s)	544
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 74, 81, 177, 410, 566, 652
BstSFI	CTRYAG	1 cut(s)	619
BstSLI	GKGCMC	1 cut(s)	379
BstV1I	GCAGC	5 cut(s)	113, 120, 578, 581, 595
BstV2I	GAAGAC	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	552
BsuI	GTATCC	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	362
BtsIMutI	CAGTG	2 cut(s)	17, 693
Cac8I	GCNNGC	3 cut(s)	36, 114, 118
CaiI	CAGNNNCTG	2 cut(s)	133, 572
CfoI	GCGC	3 cut(s)	34, 56, 77
Cfr10I	RCCGGY	2 cut(s)	34, 562
Csp6I	GTAC	2 cut(s)	95, 330
CviAII	CATG	1 cut(s)	526
CviQI	GTAC	2 cut(s)	95, 330
DdeI	CTNAG	3 cut(s)	333, 400, 552
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
Ecl136II	GAGCTC	1 cut(s)	508
Eco130I	CCWWGG	2 cut(s)	431, 656
Eco24I	GRGCYC	2 cut(s)	223, 510
Eco53kI	GAGCTC	1 cut(s)	508
Eco57I	CTGAAG	3 cut(s)	125, 399, 594
Eco81I	CCTNAGG	1 cut(s)	552
EcoICRI	GAGCTC	1 cut(s)	508
EcoT14I	CCWWGG	2 cut(s)	431, 656
EcoT38I	GRGCYC	2 cut(s)	223, 510
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
ErhI	CCWWGG	2 cut(s)	431, 656
FaeI	CATG	1 cut(s)	529
FaiI	YATR	2 cut(s)	200, 527
FatI	CATG	1 cut(s)	525
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	6 cut(s)	66, 102, 134, 567, 570, 584
FokI	GGATG	1 cut(s)	349
FriOI	GRGCYC	2 cut(s)	223, 510
Fsp4HI	GCNGC	6 cut(s)	66, 102, 134, 567, 570, 584
FspBI	CTAG	2 cut(s)	603, 657
GlaI	GCGC	3 cut(s)	33, 55, 76
GluI	GCNGC	6 cut(s)	66, 102, 134, 567, 570, 584
GsaI	CCCAGC	1 cut(s)	593
GsuI	CTGGAG	1 cut(s)	307
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	3 cut(s)	35, 563, 596
HhaI	GCGC	3 cut(s)	34, 56, 77
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	529
Hin6I	GCGC	3 cut(s)	32, 54, 75
HinP1I	GCGC	3 cut(s)	32, 54, 75
HindIII	AAGCTT	2 cut(s)	110, 158
HinfI	GANTC	5 cut(s)	7, 303, 470, 488, 599
HpaII	CCGG	3 cut(s)	35, 563, 596
HphI	GGTGA	3 cut(s)	55, 420, 551
Hpy166II	GTNNAC	2 cut(s)	97, 377
Hpy188I	TCNGA	4 cut(s)	144, 308, 463, 478
Hpy188III	TCNNGA	3 cut(s)	233, 554, 701
Hpy8I	GTNNAC	2 cut(s)	97, 377
Hpy99I	CGWCG	3 cut(s)	43, 62, 89
HpyAV	CCTTC	3 cut(s)	22, 149, 478
HpyCH4III	ACNGT	2 cut(s)	43, 697
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	4 cut(s)	116, 275, 377, 454
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 74, 81, 177, 410, 566, 652
HpyF3I	CTNAG	3 cut(s)	333, 400, 552
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	529
HspAI	GCGC	3 cut(s)	32, 54, 75
KasI	GGCGCC	1 cut(s)	31
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	3 cut(s)	141, 358, 591
Lsp1109I	GCAGC	5 cut(s)	113, 120, 578, 581, 595
LweI	GCATC	1 cut(s)	429
MaeI	CTAG	2 cut(s)	603, 657
MaeII	ACGT	1 cut(s)	87
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	5 cut(s)	16, 224, 394, 465, 661
MhlI	GDGCHC	3 cut(s)	223, 379, 510
MluCI	AATT	3 cut(s)	249, 455, 607
Mly113I	GGCGCC	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	177
MreI	CGCCGGCG	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	34
MroXI	GAANNNNTTC	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	3 cut(s)	35, 563, 596
MwoI	GCNNNNNNNGC	7 cut(s)	62, 74, 81, 177, 410, 566, 652
NaeI	GCCGGC	1 cut(s)	36
NarI	GGCGCC	1 cut(s)	32
NdeII	GATC	1 cut(s)	541
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	529
NlaIV	GGNNCC	4 cut(s)	33, 290, 360, 561
NmeAIII	GCCGAG	1 cut(s)	687
PdiI	GCCGGC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	4 cut(s)	7, 303, 470, 488
PkrI	GCNGC	6 cut(s)	67, 103, 135, 568, 571, 585
PleI	GAGTC	1 cut(s)	607
PluTI	GGCGCC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	607
Psp124BI	GAGCTC	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	589
PspN4I	GGNNCC	4 cut(s)	33, 290, 360, 561
PstNI	CAGNNNCTG	2 cut(s)	133, 572
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	2 cut(s)	96, 331
RsaNI	GTAC	2 cut(s)	95, 330
SacI	GAGCTC	1 cut(s)	510
SatI	GCNGC	6 cut(s)	66, 102, 134, 567, 570, 584
Sau3AI	GATC	1 cut(s)	541
ScaI	AGTACT	1 cut(s)	331
SchI	GAGTC	1 cut(s)	608
SduI	GDGCHC	3 cut(s)	223, 379, 510
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	1 cut(s)	619
SfoI	GGCGCC	1 cut(s)	33
SgrAI	CRCCGGYG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	3 cut(s)	249, 455, 607
SsiI	CCGC	3 cut(s)	65, 581, 644
SspDI	GGCGCC	1 cut(s)	31
SspMI	CTAG	2 cut(s)	603, 657
SstI	GAGCTC	1 cut(s)	510
StyI	CCWWGG	2 cut(s)	431, 656
TaaI	ACNGT	2 cut(s)	43, 697
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	510, 635
TasI	AATT	3 cut(s)	249, 455, 607
TatI	WGTACW	2 cut(s)	94, 329
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	4 cut(s)	7, 303, 470, 488
TscAI	CASTG	2 cut(s)	17, 700
TseI	GCWGC	5 cut(s)	101, 133, 566, 569, 583
TspDTI	ATGAA	3 cut(s)	17, 242, 258
TspRI	CASTG	2 cut(s)	17, 700
VneI	GTGCAC	1 cut(s)	375
XmaJI	CCTAGG	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	2 cut(s)	603, 657
ZrmI	AGTACT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.