AT1G06050

Protein ENHANCED DISEASE RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007793
Physical Location & Seq
Reverse (-)
1830471 .. 1832555
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06050.1

Sequence Viewer

Length: 942 bp
ATGGCTGGCTCTGTTGGTGAGGAAACTGAGCCAGAATGGATTAAGAGAGTGAAATTAGAGGGAGCTGTTCCATGTCTTAAGCCAGACGACAACTGCAAAAATGGTTGGACGACGCCATCTCCTGACACATTTATGGTTAGAGGACCAAAGTATTTCTCTGACAAAGTTAAGATACCTGCTGGTGATTTCCTTCTAAAGCCTCTGGGTTTTGATTGGATTAAAGGTCCTAAAAAGCTTTCTGAGATCCTGAGTTATCCAAGCAGCCGAATCAGGAAAGTTATCGATGAGGAGTTTCAAAAAGATGGAACTAAGCCTTTTGTCTGGGCATTCAATCTCCAGCTTCCTCACAAAGACAATTACAGTGCTGTGGCTTACTTTGTTACCACAGAGCCTATCCTTGAAGGCTCCCTGATGGATCGGTTTTTGAAAGGAGATGATGGGTTCAAGAAATCGAGGCTTAAACTGATTGCAAACATTGTCAAAGGCCCTTGGATTGTTAGAAAAGCTGTTGGAGAGCAAGCGATCTGTGTGATTGGACGTGCACTCTCTTGCAAATATGTTTCAGGGGAAAACTTTGTGGAGATTGATGTCGATATTGGTTCTTCAATGGTCGCTAGTGCCATTGTTCATCTCGCATTTGGCTACGTTACTACATTGACAGTTGATCTTGCGTTCCTCATTGAGAGTCAGACCGAAGCAGAGCTTCCAGAAAAGCTACTAGGAGCTGTGAGATTCTCTGAGCTGCAGACCGAGTCAGCCACATCTATCGAACTGTCCTCAAGCACCAGTAATGACCAGTGGGATCAAACTACCTCAGAGCGGTCGAGCTGGTGGAAATCGATTGGAAATGGATTCTCTAATCTGCTTAATCAAGATACGGCCAACATGAACAATACTTCTCATGGGGACATCCAGAAGGATGAACATGTACAGAAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

313

Amino Acids

34.85

Weight (kDa)

5.43

Isoelectric Point (pI)

30.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 36 - 248 2.3e-76 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
AccBSI CCGCTC 1 cut(s) 820
AciI CCGC 1 cut(s) 820
AclWI GGATC 3 cut(s) 238, 423, 810
AcoI YGGCCR 1 cut(s) 879
AcyI GRCGYC 1 cut(s) 113
AfaI GTAC 1 cut(s) 930
AfiI CCNNNNNNNGG 1 cut(s) 819
AflII CTTAAG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 925
AgsI TTSAA 6 cut(s) 296, 331, 401, 427, 445, 606
AjiI CACGTC 1 cut(s) 539
AluBI AGCT 9 cut(s) 65, 235, 340, 506, 703, 715, 725, 742, 828
AluI AGCT 9 cut(s) 65, 235, 340, 506, 703, 715, 725, 742, 828
Alw21I GWGCWC 1 cut(s) 544
Alw44I GTGCAC 1 cut(s) 540
AlwI GGATC 3 cut(s) 238, 423, 810
AoxI GGCC 2 cut(s) 484, 879
ApaLI GTGCAC 1 cut(s) 540
ApeKI GCWGC 2 cut(s) 261, 742
AspS9I GGNCC 3 cut(s) 143, 224, 485
AsuHPI GGTGA 2 cut(s) 29, 194
AvaII GGWCC 2 cut(s) 143, 224
BaeGI GKGCMC 1 cut(s) 544
Bbv12I GWGCWC 1 cut(s) 544
BbvI GCAGC 2 cut(s) 273, 729
BccI CCATC 4 cut(s) 124, 296, 406, 431
BceAI ACGGC 1 cut(s) 894
BfaI CTAG 2 cut(s) 615, 719
BfmI CTRYAG 1 cut(s) 743
BfrI CTTAAG 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 184
BisI GCNGC 2 cut(s) 262, 743
BlsI GCNGC 2 cut(s) 263, 744
Bme18I GGWCC 2 cut(s) 143, 224
BmgBI CACGTC 1 cut(s) 539
BmgT120I GGNCC 3 cut(s) 143, 224, 485
BmiI GGNNCC 1 cut(s) 406
BpmI CTGGAG 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 763
Bsa29I ATCGAT 2 cut(s) 282, 839
BsaHI GRCGYC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 488
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 819
Bse1I ACTGG 2 cut(s) 786, 796
BseCI ATCGAT 2 cut(s) 282, 839
BseDI CCNNGG 1 cut(s) 488
BseGI GGATG 2 cut(s) 909, 925
BseLI CCNNNNNNNGG 1 cut(s) 819
BseMII CTCAG 5 cut(s) 18, 231, 239, 729, 828
BseNI ACTGG 2 cut(s) 786, 796
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 2 cut(s) 273, 729
Bsh1285I CGRYCG 1 cut(s) 824
BshFI GGCC 2 cut(s) 486, 881
BshVI ATCGAT 2 cut(s) 282, 839
BsiEI CGRYCG 1 cut(s) 824
BsiHKAI GWGCWC 1 cut(s) 544
BslFI GGGAC 1 cut(s) 920
BslI CCNNNNNNNGG 1 cut(s) 819
BsmFI GGGAC 1 cut(s) 920
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 2 cut(s) 486, 881
Bsp1286I GDGCHC 1 cut(s) 544
Bsp1407I TGTACA 1 cut(s) 928
Bsp143I GATC 5 cut(s) 243, 415, 522, 664, 802
BspACI CCGC 1 cut(s) 820
BspANI GGCC 2 cut(s) 486, 881
BspCNI CTCAG 5 cut(s) 19, 232, 240, 730, 827
BspDI ATCGAT 2 cut(s) 282, 839
BspLI GGNNCC 1 cut(s) 406
BspMAI CTGCAG 1 cut(s) 747
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 3 cut(s) 238, 423, 810
BspTI CTTAAG 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 820
BsrGI TGTACA 1 cut(s) 928
BsrI ACTGG 2 cut(s) 786, 796
BssECI CCNNGG 1 cut(s) 488
BssMI GATC 5 cut(s) 243, 415, 522, 664, 802
BssNI GRCGYC 1 cut(s) 113
BssT1I CCWWGG 1 cut(s) 488
Bst4CI ACNGT 3 cut(s) 362, 661, 774
BstACI GRCGYC 1 cut(s) 113
BstAFI CTTAAG 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 928
BstC8I GCNNGC 2 cut(s) 7, 519
BstDEI CTNAG 6 cut(s) 27, 240, 248, 309, 738, 814
BstF5I GGATG 2 cut(s) 909, 925
BstKTI GATC 5 cut(s) 246, 418, 525, 667, 805
BstMBI GATC 5 cut(s) 243, 415, 522, 664, 802
BstMCI CGRYCG 1 cut(s) 824
BstNSI RCATGY 1 cut(s) 929
BstSFI CTRYAG 1 cut(s) 743
BstSLI GKGCMC 1 cut(s) 544
BstV1I GCAGC 2 cut(s) 273, 729
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
Bsu15I ATCGAT 2 cut(s) 282, 839
BsuRI GGCC 2 cut(s) 486, 881
BsuTUI ATCGAT 2 cut(s) 282, 839
BtrI CACGTC 1 cut(s) 539
BtsCI GGATG 2 cut(s) 909, 925
BtsIMutI CAGTG 2 cut(s) 367, 803
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 2 cut(s) 7, 519
Cfr13I GGNCC 3 cut(s) 143, 224, 485
ClaI ATCGAT 2 cut(s) 282, 839
CseI GACGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 929
CviAII CATG 4 cut(s) 72, 886, 902, 926
CviQI GTAC 1 cut(s) 929
DdeI CTNAG 6 cut(s) 27, 240, 248, 309, 738, 814
DpnI GATC 5 cut(s) 245, 417, 524, 666, 804
DpnII GATC 5 cut(s) 243, 415, 522, 664, 802
EaeI YGGCCR 1 cut(s) 879
Eco130I CCWWGG 1 cut(s) 488
Eco47I GGWCC 2 cut(s) 143, 224
EcoO109I RGGNCCY 2 cut(s) 224, 485
EcoT14I CCWWGG 1 cut(s) 488
ErhI CCWWGG 1 cut(s) 488
FaeI CATG 4 cut(s) 75, 889, 905, 929
FaiI YATR 6 cut(s) 73, 134, 558, 887, 903, 927
FalI AAGNNNNNCTT 2 cut(s) 687, 719
FaqI GGGAC 1 cut(s) 920
FatI CATG 4 cut(s) 71, 885, 901, 925
Fnu4HI GCNGC 2 cut(s) 262, 743
FokI GGATG 2 cut(s) 896, 932
Fsp4HI GCNGC 2 cut(s) 262, 743
FspBI CTAG 2 cut(s) 615, 719
GluI GCNGC 2 cut(s) 262, 743
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 2 cut(s) 486, 881
HgaI GACGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 4 cut(s) 75, 889, 905, 929
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 5 cut(s) 267, 685, 732, 752, 852
HphI GGTGA 2 cut(s) 29, 194
Hpy166II GTNNAC 1 cut(s) 542
Hpy188I TCNGA 5 cut(s) 160, 241, 690, 739, 817
Hpy188III TCNNGA 7 cut(s) 122, 247, 271, 445, 707, 872, 913
Hpy8I GTNNAC 1 cut(s) 542
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 3 cut(s) 200, 395, 910
HpyCH4III ACNGT 3 cut(s) 362, 661, 774
HpyCH4IV ACGT 2 cut(s) 538, 645
HpyCH4V TGCA 5 cut(s) 96, 470, 542, 552, 745
HpyF3I CTNAG 6 cut(s) 27, 240, 248, 309, 738, 814
HpySE526I ACGT 2 cut(s) 538, 645
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 4 cut(s) 75, 889, 905, 929
Kzo9I GATC 5 cut(s) 243, 415, 522, 664, 802
LmnI GCTCC 3 cut(s) 62, 410, 722
Lsp1109I GCAGC 2 cut(s) 273, 729
MaeI CTAG 2 cut(s) 615, 719
MaeII ACGT 2 cut(s) 538, 645
MaeIII GTNAC 2 cut(s) 379, 646
MalI GATC 5 cut(s) 245, 417, 524, 666, 804
MbiI CCGCTC 1 cut(s) 820
MboI GATC 5 cut(s) 243, 415, 522, 664, 802
MboII GAAGA 1 cut(s) 594
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 2 cut(s) 53, 355
MlyI GAGTC 2 cut(s) 694, 761
MmeI TCCRAC 2 cut(s) 86, 490
MseI TTAA 6 cut(s) 42, 78, 168, 219, 459, 867
MslI CAYNNNNRTG 1 cut(s) 131
MspCI CTTAAG 1 cut(s) 77
Mva1269I GAATGC 1 cut(s) 326
NdeII GATC 5 cut(s) 243, 415, 522, 664, 802
NlaIII CATG 4 cut(s) 75, 889, 905, 929
NlaIV GGNNCC 1 cut(s) 406
NspI RCATGY 1 cut(s) 929
PciI ACATGT 1 cut(s) 925
PctI GAATGC 1 cut(s) 326
PfeI GAWTC 3 cut(s) 267, 732, 852
PflFI GACNNNGTC 1 cut(s) 751
PkrI GCNGC 2 cut(s) 263, 744
PleI GAGTC 2 cut(s) 693, 760
PpsI GAGTC 2 cut(s) 693, 760
PpuMI RGGWCCY 1 cut(s) 224
PscI ACATGT 1 cut(s) 925
Psp5II RGGWCCY 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 406
PspPI GGNCC 3 cut(s) 143, 224, 485
PspPPI RGGWCCY 1 cut(s) 224
PstI CTGCAG 1 cut(s) 747
PsuI RGATCY 1 cut(s) 243
PsyI GACNNNGTC 1 cut(s) 751
RsaI GTAC 1 cut(s) 930
RsaNI GTAC 1 cut(s) 929
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 6 cut(s) 42, 78, 168, 219, 459, 867
SatI GCNGC 2 cut(s) 262, 743
Sau3AI GATC 5 cut(s) 243, 415, 522, 664, 802
Sau96I GGNCC 3 cut(s) 143, 224, 485
SchI GAGTC 2 cut(s) 694, 761
SduI GDGCHC 1 cut(s) 544
SfcI CTRYAG 1 cut(s) 743
SinI GGWCC 2 cut(s) 143, 224
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 77, 778
SmoI CTYRAG 2 cut(s) 77, 778
Sse9I AATT 2 cut(s) 53, 355
SsiI CCGC 1 cut(s) 820
SspMI CTAG 2 cut(s) 615, 719
StyI CCWWGG 1 cut(s) 488
TaaI ACNGT 3 cut(s) 362, 661, 774
TaiI ACGT 2 cut(s) 541, 648
TaqI TCGA 6 cut(s) 282, 452, 591, 768, 824, 839
TaqII GACCGA 2 cut(s) 707, 764
TasI AATT 2 cut(s) 53, 355
TatI WGTACW 1 cut(s) 928
TfiI GAWTC 3 cut(s) 267, 732, 852
Tru1I TTAA 6 cut(s) 42, 78, 168, 219, 459, 867
Tru9I TTAA 6 cut(s) 42, 78, 168, 219, 459, 867
TscAI CASTG 2 cut(s) 367, 803
TseI GCWGC 2 cut(s) 261, 742
TspDTI ATGAA 3 cut(s) 617, 902, 936
TspRI CASTG 2 cut(s) 367, 803
Tth111I GACNNNGTC 1 cut(s) 751
Vha464I CTTAAG 1 cut(s) 77
VneI GTGCAC 1 cut(s) 540
VpaK11BI GGWCC 2 cut(s) 143, 224
XceI RCATGY 1 cut(s) 929
XspI CTAG 2 cut(s) 615, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.